Wall clock time and date at job start Mon Mar 8 2021 11:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00169 * 2 1 4 4 O 1.20832 * 119.99843 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00202 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.84965 * 311.19850 * 5 3 2 7 7 C 1.53782 * 113.68867 * 82.46675 * 5 3 2 8 8 C 1.53781 * 87.07984 * 139.99015 * 7 5 3 9 9 H 1.09003 * 113.69094 * 89.12608 * 8 7 5 10 10 S 1.81400 * 113.61576 * 220.01883 * 8 7 5 11 11 O 1.42105 * 110.54127 * 170.87682 * 10 8 7 12 12 O 1.42093 * 110.54273 * 34.12185 * 10 8 7 13 13 O 1.52203 * 104.44928 * 282.49831 * 10 8 7 14 14 C 1.35909 * 113.99741 * 76.18459 * 13 10 8 15 15 C 1.38702 * 120.47422 * 87.38147 * 14 13 10 16 16 C 1.50711 * 119.65715 * 0.02562 * 15 14 13 17 17 O 1.42891 * 109.47024 * 233.42525 * 16 15 14 18 18 Si 1.86299 * 109.47145 * 113.42243 * 16 15 14 19 19 N 1.31836 * 120.68700 * 179.97438 * 15 14 13 20 20 C 1.31847 * 121.78072 * 359.97438 * 19 15 14 21 21 C 1.50699 * 119.55825 * 179.97438 * 20 19 15 22 22 C 1.38248 * 120.88648 * 0.27680 * 20 19 15 23 23 C 1.38542 * 119.22077 * 359.45644 * 22 20 19 24 24 C 1.53782 * 87.08404 * 334.56847 * 8 7 5 25 25 H 1.08991 * 109.47752 * 59.99472 * 1 2 3 26 26 H 1.09005 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47334 * 299.99501 * 1 2 3 28 28 H 1.09000 * 113.61320 * 25.44644 * 7 5 3 29 29 H 1.08994 * 113.61309 * 254.53844 * 7 5 3 30 30 H 1.09000 * 109.46593 * 353.42480 * 16 15 14 31 31 H 0.96703 * 114.00610 * 55.14093 * 17 16 15 32 32 H 1.48500 * 110.00205 * 300.00426 * 18 16 15 33 33 H 1.48509 * 109.99929 * 61.31848 * 18 16 15 34 34 H 1.09005 * 109.47298 * 90.00475 * 21 20 19 35 35 H 1.09003 * 109.47619 * 330.00436 * 21 20 19 36 36 H 1.08996 * 109.47523 * 210.00646 * 21 20 19 37 37 H 1.08004 * 120.39376 * 179.72038 * 22 20 19 38 38 H 1.08002 * 120.81413 * 180.26199 * 23 22 20 39 39 H 1.08997 * 113.61879 * 139.98052 * 24 8 7 40 40 H 1.09004 * 113.61405 * 270.88262 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0240 0.6362 0.7549 7 6 4.1924 1.1231 -1.3970 8 6 5.1819 2.2266 -0.9869 9 1 6.0819 1.8494 -0.5011 10 16 5.5411 3.4103 -2.3137 11 8 6.2878 4.5103 -1.8120 12 8 4.3923 3.6137 -3.1250 13 8 6.5174 2.6773 -3.2226 14 6 5.9366 1.7375 -4.0143 15 6 5.4142 2.0851 -5.2512 16 6 5.4930 3.5157 -5.7187 17 8 4.1889 3.9689 -6.0871 18 14 6.6280 3.6260 -7.1920 19 7 4.8503 1.1768 -6.0227 20 6 4.7602 -0.0865 -5.6562 21 6 4.1048 -1.0828 -6.5775 22 6 5.2532 -0.5081 -4.4355 23 6 5.8589 0.4127 -3.5961 24 6 4.1077 2.7142 -0.0004 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 3.5255 1.4143 -2.2085 29 1 4.6630 0.1538 -1.5615 30 1 5.8807 4.1400 -4.9138 31 1 3.5264 3.8700 -5.3896 32 1 7.9876 3.1573 -6.8219 33 1 6.0936 2.8040 -8.3075 34 1 4.8560 -1.5154 -7.2385 35 1 3.3427 -0.5804 -7.1733 36 1 3.6416 -1.8735 -5.9873 37 1 5.1711 -1.5441 -4.1413 38 1 6.2567 0.1106 -2.6385 39 1 4.5098 3.0294 0.9624 40 1 3.4176 3.4404 -0.4302 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_3313794_13206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:11 Heat of formation + Delta-G solvation = -141.848848 kcal Electronic energy + Delta-G solvation = -30093.437852 eV Core-core repulsion = 25776.829350 eV Total energy + Delta-G solvation = -4316.608502 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92424 -42.02511 -40.49462 -39.81025 -38.47528 -37.70833 -37.45007 -37.28321 -33.90859 -33.80342 -30.07501 -29.41598 -27.96527 -27.49630 -27.43886 -24.31091 -23.62822 -23.40291 -21.99456 -21.04251 -20.17753 -19.36164 -18.94034 -18.90547 -18.32335 -17.98011 -17.62088 -17.23956 -16.95308 -16.59669 -16.33176 -16.21369 -15.64273 -15.21256 -15.16665 -14.87516 -14.64996 -14.53211 -14.23742 -14.07685 -13.98959 -13.94836 -13.67850 -13.64388 -13.42874 -13.38374 -13.34118 -13.27017 -13.22316 -12.91302 -12.25831 -12.04602 -11.92411 -11.92303 -11.84598 -11.48923 -11.29071 -10.99192 -10.71883 -10.12441 -4.84893 -1.35707 -0.44419 -0.31141 0.73405 0.96518 1.35739 1.50907 1.69944 2.06939 2.12550 2.23583 2.37564 2.61839 2.68957 2.88828 2.96958 3.05101 3.21127 3.27988 3.43491 3.51178 3.68656 3.84474 3.94823 3.99997 4.03728 4.05849 4.08117 4.12641 4.15191 4.21964 4.25114 4.33121 4.36270 4.44150 4.49506 4.50103 4.63344 4.67041 4.86626 5.20965 5.22019 6.50833 6.54943 6.72483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.496 6.496 5 C -0.093 4.093 6 H 0.139 0.861 7 C -0.101 4.101 8 C -0.650 4.650 9 H 0.168 0.832 10 S 2.595 3.405 11 O -0.913 6.913 12 O -0.944 6.944 13 O -0.653 6.653 14 C 0.008 3.992 15 C 0.138 3.862 16 C -0.071 4.071 17 O -0.517 6.517 18 Si 0.773 3.227 19 N -0.443 5.443 20 C 0.153 3.847 21 C -0.111 4.111 22 C -0.157 4.157 23 C -0.072 4.072 24 C -0.087 4.087 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.377 0.623 32 H -0.252 1.252 33 H -0.238 1.238 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.107 0.893 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -7.238 1.982 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.383 6.383 5 C -0.113 4.113 6 H 0.157 0.843 7 C -0.139 4.139 8 C -0.756 4.756 9 H 0.186 0.814 10 S 2.690 3.310 11 O -0.911 6.911 12 O -0.942 6.942 13 O -0.611 6.611 14 C -0.037 4.037 15 C -0.002 4.002 16 C -0.179 4.179 17 O -0.322 6.322 18 Si 0.667 3.333 19 N -0.156 5.156 20 C 0.014 3.986 21 C -0.168 4.168 22 C -0.177 4.177 23 C -0.100 4.100 24 C -0.126 4.126 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.226 0.774 32 H -0.177 1.177 33 H -0.162 1.162 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.125 0.875 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.608 -6.314 -0.255 6.348 hybrid contribution -0.436 -1.548 3.117 3.508 sum 0.172 -7.862 2.863 8.368 Atomic orbital electron populations 1.23368 0.75566 1.04175 1.02954 1.86494 1.24013 1.32974 1.83767 1.23420 0.91438 0.81722 0.72603 1.90723 1.66783 1.36353 1.44412 1.22413 0.88049 1.00151 1.00715 0.84350 1.22899 0.95738 0.98473 0.96770 1.32250 1.08218 1.16088 1.19038 0.81439 1.05659 0.73784 0.75713 0.75845 1.93683 1.69665 1.47230 1.80527 1.93606 1.53037 1.84427 1.63128 1.85736 1.58349 1.57515 1.59458 1.18813 1.04221 0.87616 0.93017 1.22051 0.91586 0.98179 0.88396 1.25385 0.94142 0.87211 1.11142 1.86648 1.17291 1.84758 1.43552 0.93268 0.74416 0.89196 0.76388 1.67550 1.14066 1.01213 1.32778 1.21738 0.92495 0.91287 0.93091 1.20865 1.01229 0.96191 0.98539 1.22031 0.99758 1.01397 0.94490 1.21885 0.96128 0.90586 1.01364 1.22645 0.93876 0.95999 1.00033 0.91558 0.87680 0.91565 0.87360 0.87601 0.91621 0.77392 1.17673 1.16193 0.89361 0.89477 0.89716 0.82596 0.82477 0.87454 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.05 10.56 -39.26 -0.41 -0.46 16 3 C 0.47 0.37 7.49 36.01 0.27 0.64 16 4 O -0.50 -1.98 15.65 -18.75 -0.29 -2.27 16 5 C -0.09 0.23 4.26 -90.96 -0.39 -0.16 16 6 H 0.14 -0.70 8.14 -51.93 -0.42 -1.13 16 7 C -0.10 0.32 4.98 -25.92 -0.13 0.19 16 8 C -0.65 1.75 4.18 -25.92 -0.11 1.64 16 9 H 0.17 -0.97 8.14 -51.93 -0.42 -1.39 16 10 S 2.60 3.74 4.67 -107.50 -0.50 3.24 16 11 O -0.91 -4.44 18.09 -67.04 -1.21 -5.65 16 12 O -0.94 -2.65 12.95 -67.09 -0.87 -3.52 16 13 O -0.65 -1.04 9.12 -51.78 -0.47 -1.51 16 14 C 0.01 0.01 4.62 -39.07 -0.18 -0.17 16 15 C 0.14 0.46 4.41 -82.41 -0.36 0.10 16 16 C -0.07 -0.26 1.81 36.01 0.07 -0.20 16 17 O -0.52 -2.17 12.64 -35.23 -0.45 -2.62 16 18 Si 0.77 1.71 33.08 -169.99 -5.62 -3.92 16 19 N -0.44 -1.35 9.62 -5.62 -0.05 -1.41 16 20 C 0.15 -0.02 6.78 -82.58 -0.56 -0.58 16 21 C -0.11 0.29 10.17 36.00 0.37 0.66 16 22 C -0.16 0.40 9.73 -39.47 -0.38 0.02 16 23 C -0.07 0.14 7.08 -39.13 -0.28 -0.13 16 24 C -0.09 0.16 6.99 -25.92 -0.18 -0.02 16 25 H 0.07 -0.08 8.13 -51.93 -0.42 -0.50 16 26 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 27 H 0.07 -0.08 8.13 -51.92 -0.42 -0.51 16 28 H 0.11 -0.20 7.48 -51.93 -0.39 -0.59 16 29 H 0.11 -0.63 6.15 -51.93 -0.32 -0.95 16 30 H 0.07 0.21 5.80 -51.93 -0.30 -0.09 16 31 H 0.38 1.21 7.93 45.56 0.36 1.57 16 32 H -0.25 -0.84 7.11 56.52 0.40 -0.44 16 33 H -0.24 -1.05 7.11 56.52 0.40 -0.65 16 34 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 35 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.08 -0.41 8.07 -51.93 -0.42 -0.83 16 37 H 0.16 -0.93 8.06 -52.48 -0.42 -1.36 16 38 H 0.16 -0.89 6.94 -52.49 -0.36 -1.26 16 39 H 0.11 -0.38 8.14 -51.93 -0.42 -0.81 16 40 H 0.11 -0.05 7.40 -51.93 -0.38 -0.43 16 LS Contribution 346.61 15.07 5.22 5.22 Total: 0.00 -11.09 346.61 -10.28 -21.37 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -4.82 Total: -11.48 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.80 Total: 3.01 kcal Atomic # 7 Polarization: -1.35 SS G_CDS: -0.05 Total: -1.41 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -3.71 Total: -16.04 kcal Atomic # 14 Polarization: 1.71 SS G_CDS: -5.62 Total: -3.92 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -0.50 Total: 3.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -11.09 -10.28 -21.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_13206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.478 kcal (2) G-P(sol) polarization free energy of solvation -11.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds