Wall clock time and date at job start Mon Mar 8 2021 11:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00169 * 2 1 4 4 O 1.20832 * 119.99843 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00202 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.84965 * 311.19850 * 5 3 2 7 7 C 1.53782 * 113.68867 * 82.46675 * 5 3 2 8 8 C 1.53781 * 87.07984 * 139.99015 * 7 5 3 9 9 H 1.09003 * 113.69094 * 89.12608 * 8 7 5 10 10 S 1.81400 * 113.61576 * 220.01883 * 8 7 5 11 11 O 1.42105 * 110.54127 * 170.87682 * 10 8 7 12 12 O 1.42093 * 110.54273 * 34.12185 * 10 8 7 13 13 O 1.52203 * 104.44928 * 282.49831 * 10 8 7 14 14 C 1.35909 * 113.99741 * 76.18459 * 13 10 8 15 15 C 1.38702 * 120.47422 * 87.38147 * 14 13 10 16 16 C 1.50711 * 119.65715 * 0.02562 * 15 14 13 17 17 O 1.42891 * 109.47024 * 233.42525 * 16 15 14 18 18 Si 1.86299 * 109.47145 * 113.42243 * 16 15 14 19 19 N 1.31836 * 120.68700 * 179.97438 * 15 14 13 20 20 C 1.31847 * 121.78072 * 359.97438 * 19 15 14 21 21 C 1.50699 * 119.55825 * 179.97438 * 20 19 15 22 22 C 1.38248 * 120.88648 * 0.27680 * 20 19 15 23 23 C 1.38542 * 119.22077 * 359.45644 * 22 20 19 24 24 C 1.53782 * 87.08404 * 334.56847 * 8 7 5 25 25 H 1.08991 * 109.47752 * 59.99472 * 1 2 3 26 26 H 1.09005 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47334 * 299.99501 * 1 2 3 28 28 H 1.09000 * 113.61320 * 25.44644 * 7 5 3 29 29 H 1.08994 * 113.61309 * 254.53844 * 7 5 3 30 30 H 1.09000 * 109.46593 * 353.42480 * 16 15 14 31 31 H 0.96703 * 114.00610 * 55.14093 * 17 16 15 32 32 H 1.48500 * 110.00205 * 300.00426 * 18 16 15 33 33 H 1.48509 * 109.99929 * 61.31848 * 18 16 15 34 34 H 1.09005 * 109.47298 * 90.00475 * 21 20 19 35 35 H 1.09003 * 109.47619 * 330.00436 * 21 20 19 36 36 H 1.08996 * 109.47523 * 210.00646 * 21 20 19 37 37 H 1.08004 * 120.39376 * 179.72038 * 22 20 19 38 38 H 1.08002 * 120.81413 * 180.26199 * 23 22 20 39 39 H 1.08997 * 113.61879 * 139.98052 * 24 8 7 40 40 H 1.09004 * 113.61405 * 270.88262 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0240 0.6362 0.7549 7 6 4.1924 1.1231 -1.3970 8 6 5.1819 2.2266 -0.9869 9 1 6.0819 1.8494 -0.5011 10 16 5.5411 3.4103 -2.3137 11 8 6.2878 4.5103 -1.8120 12 8 4.3923 3.6137 -3.1250 13 8 6.5174 2.6773 -3.2226 14 6 5.9366 1.7375 -4.0143 15 6 5.4142 2.0851 -5.2512 16 6 5.4930 3.5157 -5.7187 17 8 4.1889 3.9689 -6.0871 18 14 6.6280 3.6260 -7.1920 19 7 4.8503 1.1768 -6.0227 20 6 4.7602 -0.0865 -5.6562 21 6 4.1048 -1.0828 -6.5775 22 6 5.2532 -0.5081 -4.4355 23 6 5.8589 0.4127 -3.5961 24 6 4.1077 2.7142 -0.0004 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 3.5255 1.4143 -2.2085 29 1 4.6630 0.1538 -1.5615 30 1 5.8807 4.1400 -4.9138 31 1 3.5264 3.8700 -5.3896 32 1 7.9876 3.1573 -6.8219 33 1 6.0936 2.8040 -8.3075 34 1 4.8560 -1.5154 -7.2385 35 1 3.3427 -0.5804 -7.1733 36 1 3.6416 -1.8735 -5.9873 37 1 5.1711 -1.5441 -4.1413 38 1 6.2567 0.1106 -2.6385 39 1 4.5098 3.0294 0.9624 40 1 3.4176 3.4404 -0.4302 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_13206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:10 Heat of formation + Delta-G solvation = -145.757374 kcal Electronic energy + Delta-G solvation = -30093.607338 eV Core-core repulsion = 25776.829350 eV Total energy + Delta-G solvation = -4316.777988 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.090 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.90361 -41.98514 -40.47586 -39.68337 -38.60692 -37.91519 -37.50603 -37.43404 -33.87650 -33.69416 -29.97432 -29.38337 -27.81995 -27.44256 -27.26921 -24.20744 -23.65457 -23.38094 -21.98568 -20.88985 -20.15482 -19.36406 -19.01298 -18.92978 -18.37695 -17.98621 -17.57342 -17.12870 -16.92779 -16.66524 -16.42142 -16.20243 -15.57098 -15.22657 -15.08984 -14.80250 -14.58225 -14.46020 -14.28070 -14.16940 -13.94265 -13.85120 -13.70868 -13.56298 -13.49658 -13.40937 -13.25983 -13.11680 -13.07150 -12.81454 -12.38170 -12.11128 -12.00819 -11.90641 -11.72226 -11.50204 -11.35153 -11.04961 -10.70084 -10.08452 -5.07168 -1.36702 -0.40690 -0.19447 0.72762 0.97248 1.14875 1.44723 1.62402 1.84808 2.17504 2.26316 2.43450 2.68576 2.81964 2.98078 3.10320 3.13015 3.39310 3.49813 3.55342 3.66577 3.78288 3.85366 3.98928 4.14384 4.22837 4.24219 4.24713 4.25123 4.33036 4.33944 4.47544 4.56035 4.62486 4.66710 4.67901 4.71489 4.86678 4.88193 5.06310 5.26576 5.38334 6.40826 6.56046 6.58849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.084 4.084 6 H 0.179 0.821 7 C -0.103 4.103 8 C -0.616 4.616 9 H 0.213 0.787 10 S 2.581 3.419 11 O -0.962 6.962 12 O -0.971 6.971 13 O -0.658 6.658 14 C -0.008 4.008 15 C 0.106 3.894 16 C -0.091 4.091 17 O -0.528 6.528 18 Si 0.829 3.171 19 N -0.480 5.480 20 C 0.133 3.867 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.067 4.067 24 C -0.105 4.105 25 H 0.057 0.943 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.061 0.939 31 H 0.376 0.624 32 H -0.266 1.266 33 H -0.272 1.272 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.203 0.797 38 H 0.205 0.795 39 H 0.128 0.872 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -10.873 3.982 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.104 4.104 6 H 0.196 0.804 7 C -0.141 4.141 8 C -0.727 4.727 9 H 0.230 0.770 10 S 2.682 3.318 11 O -0.960 6.960 12 O -0.969 6.969 13 O -0.616 6.616 14 C -0.053 4.053 15 C -0.033 4.033 16 C -0.198 4.198 17 O -0.334 6.334 18 Si 0.726 3.274 19 N -0.194 5.194 20 C -0.005 4.005 21 C -0.167 4.167 22 C -0.156 4.156 23 C -0.093 4.093 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.167 0.833 30 H 0.079 0.921 31 H 0.226 0.774 32 H -0.192 1.192 33 H -0.198 1.198 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.220 0.780 38 H 0.222 0.778 39 H 0.146 0.854 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.496 -9.909 1.716 10.167 hybrid contribution -0.816 -0.554 2.521 2.707 sum 0.681 -10.463 4.237 11.309 Atomic orbital electron populations 1.23546 0.75078 1.05778 1.02333 1.86496 1.24628 1.32599 1.83371 1.24172 0.92826 0.81218 0.71193 1.90713 1.68014 1.37732 1.46501 1.22609 0.85666 0.99956 1.02161 0.80371 1.23075 0.95194 0.99957 0.95847 1.32097 1.09924 1.14325 1.16365 0.76959 1.05829 0.72958 0.76361 0.76640 1.93617 1.70684 1.50444 1.81296 1.93569 1.53494 1.85281 1.64563 1.85700 1.58162 1.57953 1.59764 1.19088 1.04623 0.88981 0.92573 1.21910 0.93717 0.97700 0.89990 1.25631 0.93788 0.88595 1.11756 1.86595 1.17856 1.85147 1.43804 0.92594 0.72610 0.88174 0.74004 1.67463 1.15135 1.02775 1.33983 1.22309 0.92835 0.90544 0.94839 1.20959 1.00900 0.96200 0.98634 1.22539 0.97130 1.03275 0.92690 1.22450 0.95102 0.88645 1.03142 1.22803 0.93996 0.96501 1.01044 0.92402 0.84948 0.92088 0.89190 0.83323 0.92105 0.77442 1.19171 1.19813 0.88799 0.91224 0.86671 0.77961 0.77844 0.85398 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.11 16 2 O -0.36 0.39 10.56 -51.42 -0.54 -0.15 16 3 C 0.46 0.41 7.49 71.24 0.53 0.94 16 4 O -0.54 -4.97 15.65 21.95 0.34 -4.63 16 5 C -0.08 0.65 4.26 -11.01 -0.05 0.60 16 6 H 0.18 -2.75 8.14 -2.39 -0.02 -2.77 16 7 C -0.10 0.96 4.98 31.12 0.16 1.12 16 8 C -0.62 4.71 4.18 31.12 0.13 4.84 16 9 H 0.21 -3.51 8.14 -2.39 -0.02 -3.53 16 10 S 2.58 10.36 4.67 -56.49 -0.26 10.10 16 11 O -0.96 -11.54 18.09 -118.57 -2.15 -13.69 16 12 O -0.97 -8.17 12.95 -118.52 -1.53 -9.70 16 13 O -0.66 -2.45 9.12 -61.62 -0.56 -3.02 16 14 C -0.01 -0.02 4.62 22.60 0.10 0.08 16 15 C 0.11 0.88 4.41 42.67 0.19 1.07 16 16 C -0.09 -0.95 1.81 71.24 0.13 -0.82 16 17 O -0.53 -6.40 12.64 -148.98 -1.88 -8.28 16 18 Si 0.83 5.91 33.08 68.60 2.27 8.18 16 19 N -0.48 -3.60 9.62 -171.70 -1.65 -5.26 16 20 C 0.13 -0.13 6.78 42.56 0.29 0.16 16 21 C -0.11 0.68 10.17 71.24 0.72 1.40 16 22 C -0.14 1.17 9.73 22.34 0.22 1.39 16 23 C -0.07 0.48 7.08 22.56 0.16 0.64 16 24 C -0.10 0.50 6.99 31.12 0.22 0.71 16 25 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 26 H 0.13 -1.22 8.14 -2.38 -0.02 -1.24 16 27 H 0.06 -0.13 8.13 -2.38 -0.02 -0.15 16 28 H 0.09 -0.41 7.48 -2.39 -0.02 -0.43 16 29 H 0.15 -2.67 6.15 -2.39 -0.01 -2.69 16 30 H 0.06 0.61 5.80 -2.39 -0.01 0.60 16 31 H 0.38 4.02 7.93 -74.06 -0.59 3.43 16 32 H -0.27 -2.37 7.11 99.48 0.71 -1.66 16 33 H -0.27 -3.33 7.11 99.48 0.71 -2.63 16 34 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.11 -1.45 8.07 -2.39 -0.02 -1.47 16 37 H 0.20 -3.66 8.06 -2.91 -0.02 -3.69 16 38 H 0.20 -3.54 6.94 -2.91 -0.02 -3.56 16 39 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 40 H 0.09 0.07 7.40 -2.38 -0.02 0.05 16 Total: 0.00 -33.67 346.61 -1.43 -35.10 By element: Atomic # 1 Polarization: -22.45 SS G_CDS: 0.54 Total: -21.90 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 4.00 Total: 13.25 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -1.65 Total: -5.26 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -6.32 Total: -39.46 kcal Atomic # 14 Polarization: 5.91 SS G_CDS: 2.27 Total: 8.18 kcal Atomic # 16 Polarization: 10.36 SS G_CDS: -0.26 Total: 10.10 kcal Total: -33.67 -1.43 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_13206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.661 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds