Wall clock time and date at job start Mon Mar 8 2021 11:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 119.55533 * 2 1 4 4 C 1.38575 * 119.22063 * 180.22846 * 3 2 1 5 5 C 1.39095 * 118.37393 * 359.50149 * 4 3 2 6 6 O 1.35915 * 120.47318 * 180.22649 * 5 4 3 7 7 S 1.52195 * 114.00060 * 274.62674 * 6 5 4 8 8 O 1.42104 * 104.27847 * 190.42907 * 7 6 5 9 9 O 1.42101 * 104.27914 * 318.28678 * 7 6 5 10 10 C 1.81398 * 104.45230 * 74.35741 * 7 6 5 11 11 C 1.53005 * 109.47207 * 174.87467 * 10 7 6 12 12 C 1.53008 * 109.46815 * 180.02562 * 11 10 7 13 13 Si 1.86295 * 109.46629 * 180.02562 * 12 11 10 14 14 C 1.86302 * 109.47224 * 60.00317 * 13 12 11 15 15 C 1.86307 * 109.46863 * 179.97438 * 13 12 11 16 16 C 1.86292 * 109.47427 * 299.99919 * 13 12 11 17 17 C 1.38750 * 119.05145 * 0.25695 * 5 4 3 18 18 C 1.50706 * 119.65903 * 179.97438 * 17 5 4 19 19 O 1.42895 * 109.46905 * 117.80206 * 18 17 5 20 20 Si 1.86298 * 109.47336 * 237.80364 * 18 17 5 21 21 H 1.48504 * 109.46920 * 59.99946 * 20 18 17 22 22 H 1.48498 * 109.47396 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46961 * 300.00102 * 20 18 17 24 24 N 1.31808 * 120.68446 * 359.97438 * 17 5 4 25 25 H 1.08997 * 109.47256 * 270.27592 * 1 2 3 26 26 H 1.09008 * 109.47042 * 30.27777 * 1 2 3 27 27 H 1.09006 * 109.47283 * 150.27087 * 1 2 3 28 28 H 1.08001 * 120.38609 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.81131 * 179.78051 * 4 3 2 30 30 H 1.08992 * 109.47012 * 294.88168 * 10 7 6 31 31 H 1.09010 * 109.46744 * 54.87752 * 10 7 6 32 32 H 1.08993 * 109.47186 * 300.00264 * 11 10 7 33 33 H 1.08998 * 109.46664 * 60.00681 * 11 10 7 34 34 H 1.09001 * 109.46948 * 300.00507 * 12 11 10 35 35 H 1.08998 * 109.46676 * 60.00115 * 12 11 10 36 36 H 1.09006 * 109.47063 * 59.99939 * 14 13 12 37 37 H 1.09004 * 109.47084 * 179.97438 * 14 13 12 38 38 H 1.08993 * 109.46678 * 299.99500 * 14 13 12 39 39 H 1.08999 * 109.47279 * 59.99857 * 15 13 12 40 40 H 1.08995 * 109.47152 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.46850 * 300.00326 * 15 13 12 42 42 H 1.09002 * 109.47336 * 60.00282 * 16 13 12 43 43 H 1.09004 * 109.47169 * 180.02562 * 16 13 12 44 44 H 1.09004 * 109.47222 * 300.00033 * 16 13 12 45 45 H 1.09001 * 109.46944 * 357.80638 * 18 17 5 46 46 H 0.96698 * 114.00157 * 294.60875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2023 0.0000 4 6 3.5745 1.1943 -0.0048 5 6 4.2284 -0.0334 0.0011 6 8 5.5863 -0.0911 0.0014 7 16 6.2095 -0.0121 -1.3849 8 8 7.5768 -0.3365 -1.1735 9 8 5.3774 -0.8352 -2.1907 10 6 6.0348 1.7295 -1.8612 11 6 6.7435 1.9667 -3.1963 12 6 6.5966 3.4359 -3.5977 13 14 7.4588 3.7244 -5.2237 14 6 6.6927 2.6433 -6.5333 15 6 7.2794 5.5132 -5.7128 16 6 9.2658 3.3054 -5.0514 17 6 3.4746 -1.1983 0.0062 18 6 4.1689 -2.5358 0.0121 19 8 3.8305 -3.2428 1.2069 20 14 3.6245 -3.5247 -1.4699 21 1 3.9762 -2.7899 -2.7116 22 1 4.3091 -4.8425 -1.4645 23 1 2.1548 -3.7297 -1.4155 24 7 2.1575 -1.1471 0.0059 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5096 28 1 1.6478 2.1371 0.0004 29 1 4.1331 2.1185 -0.0085 30 1 4.9775 1.9742 -1.9624 31 1 6.4824 2.3624 -1.0948 32 1 7.8007 1.7220 -3.0950 33 1 6.2958 1.3339 -3.9626 34 1 5.5393 3.6809 -3.6988 35 1 7.0444 4.0683 -2.8312 36 1 5.6353 2.8886 -6.6341 37 1 7.1969 2.8125 -7.4848 38 1 6.7973 1.5968 -6.2473 39 1 7.7272 6.1461 -4.9467 40 1 7.7842 5.6821 -6.6639 41 1 6.2220 5.7579 -5.8137 42 1 9.3705 2.2588 -4.7655 43 1 9.7703 3.4747 -6.0028 44 1 9.7141 3.9380 -4.2852 45 1 5.2477 -2.3853 -0.0278 46 1 4.1573 -2.8265 2.0162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_3313794_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:55:03 Heat of formation + Delta-G solvation = -153.402055 kcal Electronic energy + Delta-G solvation = -27555.821122 eV Core-core repulsion = 23696.783960 eV Total energy + Delta-G solvation = -3859.037162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.82332 -40.44375 -38.36526 -37.82966 -37.26357 -36.13227 -33.91706 -33.71773 -29.83445 -29.39209 -28.61556 -28.49840 -28.45640 -27.44240 -24.43049 -23.50037 -22.97103 -21.81744 -19.78815 -19.31643 -18.87940 -18.30110 -17.47334 -17.02312 -16.86402 -16.37926 -16.07646 -15.62605 -15.42754 -15.18359 -14.92931 -14.48509 -14.39098 -14.28877 -14.25344 -14.13122 -14.04699 -13.76413 -13.74671 -13.66283 -13.36237 -13.34444 -13.34088 -13.29790 -13.24209 -13.20744 -13.18033 -13.17835 -12.11949 -12.10137 -11.99483 -11.78414 -11.62291 -11.32224 -11.13561 -10.92699 -10.89299 -10.71232 -10.61737 -10.08961 -1.25489 -0.40319 -0.26558 0.82025 1.32284 1.62046 1.75041 1.76608 1.82643 1.91200 2.17874 2.27077 2.39643 2.52029 2.70817 2.79322 3.12264 3.25658 3.31158 3.42849 3.55141 3.62509 3.77909 3.87942 4.03041 4.08933 4.20781 4.25435 4.35270 4.39300 4.48516 4.51748 4.54656 4.62684 4.63856 4.67563 4.68000 4.69280 4.70542 4.70838 4.78765 4.91621 5.12993 5.26141 5.38468 5.46693 5.48932 6.46658 6.59684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.152 3.848 3 C -0.150 4.150 4 C -0.085 4.085 5 C 0.017 3.983 6 O -0.657 6.657 7 S 2.571 3.429 8 O -0.917 6.917 9 O -0.941 6.941 10 C -0.647 4.647 11 C -0.102 4.102 12 C -0.406 4.406 13 Si 1.003 2.997 14 C -0.453 4.453 15 C -0.449 4.449 16 C -0.454 4.454 17 C 0.140 3.860 18 C -0.084 4.084 19 O -0.521 6.521 20 Si 1.004 2.996 21 H -0.217 1.217 22 H -0.251 1.251 23 H -0.240 1.240 24 N -0.442 5.442 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 6.820 -0.617 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 C -0.170 4.170 4 C -0.113 4.113 5 C -0.027 4.027 6 O -0.615 6.615 7 S 2.667 3.333 8 O -0.915 6.915 9 O -0.939 6.939 10 C -0.775 4.775 11 C -0.140 4.140 12 C -0.492 4.492 13 Si 1.199 2.801 14 C -0.561 4.561 15 C -0.557 4.557 16 C -0.561 4.561 17 C -0.002 4.002 18 C -0.192 4.192 19 O -0.324 6.324 20 Si 0.819 3.181 21 H -0.139 1.139 22 H -0.174 1.174 23 H -0.163 1.163 24 N -0.154 5.154 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.532 4.459 -1.544 5.894 hybrid contribution 1.146 2.509 1.142 2.986 sum -2.386 6.968 -0.402 7.376 Atomic orbital electron populations 1.20866 0.87246 1.04597 1.04111 1.21723 0.98069 0.87743 0.91089 1.22023 0.93064 1.00419 1.01528 1.21921 0.95798 0.96825 0.96711 1.18802 0.77461 0.95329 1.11130 1.85742 1.25723 1.91699 1.58298 1.06365 0.75212 0.78240 0.73471 1.93679 1.32855 1.82417 1.82565 1.93715 1.67363 1.63722 1.69106 1.30949 1.11167 1.25983 1.09356 1.20989 1.00897 0.99492 0.92633 1.26170 1.08842 0.96939 1.17210 0.79317 0.67159 0.67353 0.66237 1.26177 1.07268 1.09991 1.12650 1.26104 1.04589 1.19291 1.05687 1.26181 1.19714 1.05451 1.04795 1.21927 0.89929 0.95172 0.93132 1.25476 1.00257 0.93533 0.99903 1.86795 1.80425 1.50441 1.14767 0.84672 0.81491 0.78082 0.73900 1.13930 1.17432 1.16299 1.67522 1.07113 1.29171 1.11631 0.89291 0.89786 0.89468 0.82680 0.82674 0.84647 0.84199 0.89696 0.89893 0.90047 0.89976 0.91173 0.91051 0.91114 0.91253 0.91102 0.91263 0.91071 0.91059 0.91143 0.90707 0.78485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.31 10.16 36.01 0.37 0.67 16 2 C 0.15 -0.02 6.78 -82.58 -0.56 -0.58 16 3 C -0.15 0.36 9.74 -39.46 -0.38 -0.03 16 4 C -0.09 0.15 8.55 -39.14 -0.33 -0.18 16 5 C 0.02 0.02 4.73 -39.07 -0.18 -0.16 16 6 O -0.66 -0.94 8.90 -51.80 -0.46 -1.40 16 7 S 2.57 3.86 4.95 -107.50 -0.53 3.33 16 8 O -0.92 -4.24 18.09 -67.04 -1.21 -5.45 16 9 O -0.94 -3.11 13.70 -67.04 -0.92 -4.03 16 10 C -0.65 1.60 5.14 37.16 0.19 1.79 16 11 C -0.10 0.21 4.59 -26.72 -0.12 0.09 16 12 C -0.41 1.34 4.45 37.16 0.17 1.50 16 13 Si 1.00 -3.46 12.19 -169.99 -2.07 -5.53 16 14 C -0.45 0.92 8.65 101.05 0.87 1.79 16 15 C -0.45 1.04 8.65 101.05 0.87 1.91 16 16 C -0.45 0.87 8.65 101.05 0.87 1.74 16 17 C 0.14 0.43 4.79 -82.41 -0.40 0.04 16 18 C -0.08 -0.30 2.29 36.01 0.08 -0.22 16 19 O -0.52 -1.59 12.63 -35.23 -0.45 -2.03 16 20 Si 1.00 4.22 26.76 -169.99 -4.55 -0.32 16 21 H -0.22 -0.97 6.37 56.52 0.36 -0.61 16 22 H -0.25 -1.04 7.11 56.52 0.40 -0.64 16 23 H -0.24 -1.11 7.11 56.52 0.40 -0.71 16 24 N -0.44 -1.27 9.34 -5.62 -0.05 -1.33 16 25 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 26 H 0.08 -0.41 8.08 -51.92 -0.42 -0.83 16 27 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.16 -0.89 8.06 -52.49 -0.42 -1.31 16 29 H 0.16 -0.81 7.16 -52.49 -0.38 -1.19 16 30 H 0.14 -0.61 6.60 -51.93 -0.34 -0.95 16 31 H 0.14 -0.63 8.14 -51.92 -0.42 -1.05 16 32 H 0.08 -0.21 7.79 -51.93 -0.40 -0.62 16 33 H 0.08 -0.24 7.79 -51.93 -0.40 -0.64 16 34 H 0.08 -0.32 7.96 -51.93 -0.41 -0.74 16 35 H 0.08 -0.31 7.96 -51.93 -0.41 -0.73 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 39 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 45 H 0.07 0.20 6.48 -51.93 -0.34 -0.14 16 46 H 0.37 -0.18 9.11 45.56 0.42 0.24 16 LS Contribution 387.09 15.07 5.83 5.83 Total: 0.00 -8.88 387.09 -9.89 -18.77 By element: Atomic # 1 Polarization: -9.28 SS G_CDS: -6.93 Total: -16.20 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 1.45 Total: 8.37 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -0.05 Total: -1.33 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -3.04 Total: -12.91 kcal Atomic # 14 Polarization: 0.76 SS G_CDS: -6.62 Total: -5.86 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -0.53 Total: 3.33 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -8.88 -9.89 -18.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.628 kcal (2) G-P(sol) polarization free energy of solvation -8.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds