Wall clock time and date at job start Mon Mar 8 2021 11:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 119.55533 * 2 1 4 4 C 1.38575 * 119.22063 * 180.22846 * 3 2 1 5 5 C 1.39095 * 118.37393 * 359.50149 * 4 3 2 6 6 O 1.35915 * 120.47318 * 180.22649 * 5 4 3 7 7 S 1.52195 * 114.00060 * 274.62674 * 6 5 4 8 8 O 1.42104 * 104.27847 * 190.42907 * 7 6 5 9 9 O 1.42101 * 104.27914 * 318.28678 * 7 6 5 10 10 C 1.81398 * 104.45230 * 74.35741 * 7 6 5 11 11 C 1.53005 * 109.47207 * 174.87467 * 10 7 6 12 12 C 1.53008 * 109.46815 * 180.02562 * 11 10 7 13 13 Si 1.86295 * 109.46629 * 180.02562 * 12 11 10 14 14 C 1.86302 * 109.47224 * 60.00317 * 13 12 11 15 15 C 1.86307 * 109.46863 * 179.97438 * 13 12 11 16 16 C 1.86292 * 109.47427 * 299.99919 * 13 12 11 17 17 C 1.38750 * 119.05145 * 0.25695 * 5 4 3 18 18 C 1.50706 * 119.65903 * 179.97438 * 17 5 4 19 19 O 1.42895 * 109.46905 * 117.80206 * 18 17 5 20 20 Si 1.86298 * 109.47336 * 237.80364 * 18 17 5 21 21 H 1.48504 * 109.46920 * 59.99946 * 20 18 17 22 22 H 1.48498 * 109.47396 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46961 * 300.00102 * 20 18 17 24 24 N 1.31808 * 120.68446 * 359.97438 * 17 5 4 25 25 H 1.08997 * 109.47256 * 270.27592 * 1 2 3 26 26 H 1.09008 * 109.47042 * 30.27777 * 1 2 3 27 27 H 1.09006 * 109.47283 * 150.27087 * 1 2 3 28 28 H 1.08001 * 120.38609 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.81131 * 179.78051 * 4 3 2 30 30 H 1.08992 * 109.47012 * 294.88168 * 10 7 6 31 31 H 1.09010 * 109.46744 * 54.87752 * 10 7 6 32 32 H 1.08993 * 109.47186 * 300.00264 * 11 10 7 33 33 H 1.08998 * 109.46664 * 60.00681 * 11 10 7 34 34 H 1.09001 * 109.46948 * 300.00507 * 12 11 10 35 35 H 1.08998 * 109.46676 * 60.00115 * 12 11 10 36 36 H 1.09006 * 109.47063 * 59.99939 * 14 13 12 37 37 H 1.09004 * 109.47084 * 179.97438 * 14 13 12 38 38 H 1.08993 * 109.46678 * 299.99500 * 14 13 12 39 39 H 1.08999 * 109.47279 * 59.99857 * 15 13 12 40 40 H 1.08995 * 109.47152 * 179.97438 * 15 13 12 41 41 H 1.09001 * 109.46850 * 300.00326 * 15 13 12 42 42 H 1.09002 * 109.47336 * 60.00282 * 16 13 12 43 43 H 1.09004 * 109.47169 * 180.02562 * 16 13 12 44 44 H 1.09004 * 109.47222 * 300.00033 * 16 13 12 45 45 H 1.09001 * 109.46944 * 357.80638 * 18 17 5 46 46 H 0.96698 * 114.00157 * 294.60875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2023 0.0000 4 6 3.5745 1.1943 -0.0048 5 6 4.2284 -0.0334 0.0011 6 8 5.5863 -0.0911 0.0014 7 16 6.2095 -0.0121 -1.3849 8 8 7.5768 -0.3365 -1.1735 9 8 5.3774 -0.8352 -2.1907 10 6 6.0348 1.7295 -1.8612 11 6 6.7435 1.9667 -3.1963 12 6 6.5966 3.4359 -3.5977 13 14 7.4588 3.7244 -5.2237 14 6 6.6927 2.6433 -6.5333 15 6 7.2794 5.5132 -5.7128 16 6 9.2658 3.3054 -5.0514 17 6 3.4746 -1.1983 0.0062 18 6 4.1689 -2.5358 0.0121 19 8 3.8305 -3.2428 1.2069 20 14 3.6245 -3.5247 -1.4699 21 1 3.9762 -2.7899 -2.7116 22 1 4.3091 -4.8425 -1.4645 23 1 2.1548 -3.7297 -1.4155 24 7 2.1575 -1.1471 0.0059 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5096 28 1 1.6478 2.1371 0.0004 29 1 4.1331 2.1185 -0.0085 30 1 4.9775 1.9742 -1.9624 31 1 6.4824 2.3624 -1.0948 32 1 7.8007 1.7220 -3.0950 33 1 6.2958 1.3339 -3.9626 34 1 5.5393 3.6809 -3.6988 35 1 7.0444 4.0683 -2.8312 36 1 5.6353 2.8886 -6.6341 37 1 7.1969 2.8125 -7.4848 38 1 6.7973 1.5968 -6.2473 39 1 7.7272 6.1461 -4.9467 40 1 7.7842 5.6821 -6.6639 41 1 6.2220 5.7579 -5.8137 42 1 9.3705 2.2588 -4.7655 43 1 9.7703 3.4747 -6.0028 44 1 9.7141 3.9380 -4.2852 45 1 5.2477 -2.3853 -0.0278 46 1 4.1573 -2.8265 2.0162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:55:02 Heat of formation + Delta-G solvation = -152.141432 kcal Electronic energy + Delta-G solvation = -27555.766458 eV Core-core repulsion = 23696.783960 eV Total energy + Delta-G solvation = -3858.982497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.123 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.78730 -40.40699 -38.49271 -37.98997 -37.38771 -35.90588 -33.85708 -33.58658 -29.63895 -29.33138 -28.39077 -28.31004 -28.23648 -27.42626 -24.28641 -23.54105 -22.75576 -21.75850 -19.80759 -19.33540 -18.90492 -18.39362 -17.44521 -16.93794 -16.89909 -16.50707 -15.96399 -15.52637 -15.49196 -15.03187 -14.76518 -14.60409 -14.31235 -14.12212 -14.08857 -14.02137 -13.95631 -13.58490 -13.57090 -13.53222 -13.43920 -13.40456 -13.18488 -13.15309 -13.06737 -13.03940 -12.99151 -12.97938 -12.30649 -12.20266 -11.90209 -11.81687 -11.77484 -11.52914 -11.09549 -10.71026 -10.68490 -10.63800 -10.42800 -10.01939 -1.24316 -0.34929 -0.14173 0.80725 1.05453 1.44497 1.56975 1.86270 1.91804 2.00486 2.02101 2.27499 2.41603 2.72484 2.74330 2.80658 3.21196 3.46522 3.50675 3.63392 3.64681 3.71685 3.77473 4.00126 4.16311 4.27752 4.33625 4.44967 4.57605 4.63626 4.71514 4.78455 4.78923 4.81053 4.83383 4.86302 4.87475 4.88069 4.88706 4.93200 5.10128 5.13120 5.44687 5.45820 5.60284 5.66525 5.67181 6.43647 6.65407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.135 3.865 3 C -0.134 4.134 4 C -0.080 4.080 5 C 0.002 3.998 6 O -0.661 6.661 7 S 2.558 3.442 8 O -0.963 6.963 9 O -0.970 6.970 10 C -0.622 4.622 11 C -0.122 4.122 12 C -0.406 4.406 13 Si 1.068 2.932 14 C -0.475 4.475 15 C -0.463 4.463 16 C -0.477 4.477 17 C 0.112 3.888 18 C -0.087 4.087 19 O -0.534 6.534 20 Si 1.008 2.992 21 H -0.226 1.226 22 H -0.258 1.258 23 H -0.252 1.252 24 N -0.477 5.477 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.199 0.801 29 H 0.198 0.802 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 10.205 0.002 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.003 4.003 3 C -0.153 4.153 4 C -0.107 4.107 5 C -0.043 4.043 6 O -0.619 6.619 7 S 2.659 3.341 8 O -0.962 6.962 9 O -0.969 6.969 10 C -0.753 4.753 11 C -0.161 4.161 12 C -0.493 4.493 13 Si 1.261 2.739 14 C -0.580 4.580 15 C -0.569 4.569 16 C -0.582 4.582 17 C -0.029 4.029 18 C -0.195 4.195 19 O -0.340 6.340 20 Si 0.825 3.175 21 H -0.148 1.148 22 H -0.182 1.182 23 H -0.175 1.175 24 N -0.190 5.190 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.216 0.784 29 H 0.215 0.785 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.667 7.784 -0.934 9.124 hybrid contribution 1.458 1.520 0.903 2.291 sum -3.209 9.304 -0.031 9.842 Atomic orbital electron populations 1.20963 0.85791 1.05229 1.04732 1.22274 0.99223 0.87968 0.90866 1.22501 0.92945 1.01079 0.98807 1.22429 0.96269 0.96913 0.95091 1.19026 0.77194 0.96145 1.11891 1.85701 1.26058 1.92132 1.58017 1.06552 0.74021 0.80379 0.73113 1.93616 1.34997 1.84328 1.83216 1.93672 1.67395 1.66235 1.69568 1.30793 1.13480 1.21127 1.09915 1.21232 1.01195 1.00683 0.92976 1.26173 1.10066 0.95902 1.17128 0.78305 0.64846 0.65391 0.65395 1.26449 1.07734 1.10448 1.13395 1.26268 1.04756 1.20411 1.05482 1.26475 1.21972 1.05260 1.04502 1.21751 0.90462 0.95268 0.95388 1.25295 1.00424 0.94385 0.99409 1.86731 1.80731 1.51093 1.15419 0.84579 0.80500 0.77825 0.74610 1.14809 1.18167 1.17539 1.67442 1.07272 1.31321 1.12927 0.88594 0.86933 0.91035 0.78390 0.78540 0.81684 0.81184 0.89808 0.89611 0.88355 0.88544 0.90883 0.91725 0.91553 0.91027 0.91820 0.90912 0.91574 0.91714 0.90992 0.90727 0.76955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.74 10.16 71.24 0.72 1.46 16 2 C 0.14 -0.19 6.78 42.55 0.29 0.10 16 3 C -0.13 1.08 9.74 22.35 0.22 1.29 16 4 C -0.08 0.53 8.55 22.56 0.19 0.72 16 5 C 0.00 0.00 4.73 22.60 0.11 0.11 16 6 O -0.66 -2.06 8.90 -61.68 -0.55 -2.61 16 7 S 2.56 8.90 4.95 -56.49 -0.28 8.62 16 8 O -0.96 -10.63 18.09 -118.57 -2.15 -12.77 16 9 O -0.97 -7.97 13.70 -118.57 -1.62 -9.59 16 10 C -0.62 4.72 5.14 71.98 0.37 5.09 16 11 C -0.12 0.73 4.59 30.60 0.14 0.87 16 12 C -0.41 3.90 4.45 71.98 0.32 4.22 16 13 Si 1.07 -8.52 12.19 68.60 0.84 -7.69 16 14 C -0.47 1.94 8.65 113.37 0.98 2.92 16 15 C -0.46 2.68 8.65 113.37 0.98 3.66 16 16 C -0.48 1.74 8.65 113.37 0.98 2.72 16 17 C 0.11 0.81 4.79 42.69 0.20 1.02 16 18 C -0.09 -0.83 2.29 71.24 0.16 -0.67 16 19 O -0.53 -4.47 12.63 -148.98 -1.88 -6.35 16 20 Si 1.01 11.42 26.76 68.60 1.84 13.25 16 21 H -0.23 -2.74 6.37 99.48 0.63 -2.10 16 22 H -0.26 -2.95 7.11 99.48 0.71 -2.24 16 23 H -0.25 -3.15 7.11 99.48 0.71 -2.44 16 24 N -0.48 -3.14 9.34 -171.69 -1.60 -4.74 16 25 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.11 -1.43 8.08 -2.38 -0.02 -1.45 16 27 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.20 -3.36 8.06 -2.91 -0.02 -3.39 16 29 H 0.20 -3.10 7.16 -2.91 -0.02 -3.12 16 30 H 0.17 -2.20 6.60 -2.39 -0.02 -2.21 16 31 H 0.17 -2.24 8.14 -2.39 -0.02 -2.26 16 32 H 0.08 -0.48 7.79 -2.39 -0.02 -0.49 16 33 H 0.09 -0.56 7.79 -2.39 -0.02 -0.58 16 34 H 0.10 -1.20 7.96 -2.39 -0.02 -1.22 16 35 H 0.10 -1.13 7.96 -2.39 -0.02 -1.15 16 36 H 0.07 -0.35 7.96 -2.38 -0.02 -0.36 16 37 H 0.06 -0.19 7.96 -2.38 -0.02 -0.21 16 38 H 0.07 -0.22 7.79 -2.39 -0.02 -0.23 16 39 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 40 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 42 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 43 H 0.06 -0.17 7.96 -2.38 -0.02 -0.19 16 44 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 45 H 0.07 0.62 6.48 -2.39 -0.02 0.60 16 46 H 0.38 0.41 9.11 -74.06 -0.67 -0.27 16 Total: 0.00 -25.69 387.09 1.23 -24.46 By element: Atomic # 1 Polarization: -27.08 SS G_CDS: 0.97 Total: -26.11 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 5.67 Total: 23.53 kcal Atomic # 7 Polarization: -3.14 SS G_CDS: -1.60 Total: -4.74 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -6.20 Total: -31.32 kcal Atomic # 14 Polarization: 2.90 SS G_CDS: 2.67 Total: 5.57 kcal Atomic # 16 Polarization: 8.90 SS G_CDS: -0.28 Total: 8.62 kcal Total: -25.69 1.23 -24.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.685 kcal (2) G-P(sol) polarization free energy of solvation -25.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds