Wall clock time and date at job start Mon Mar 8 2021 12:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31849 * 119.55419 * 2 1 4 4 C 1.31839 * 121.78052 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.65709 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47073 * 293.58375 * 5 4 3 7 7 Si 1.86296 * 109.47601 * 53.58591 * 5 4 3 8 8 C 1.38712 * 120.68417 * 0.24899 * 4 3 2 9 9 O 1.35912 * 120.47376 * 179.73105 * 8 4 3 10 10 S 1.52193 * 114.00290 * 90.00044 * 9 8 4 11 11 O 1.42102 * 104.27890 * 191.06968 * 10 9 8 12 12 O 1.42100 * 104.27821 * 318.93328 * 10 9 8 13 13 C 1.81400 * 104.44957 * 74.99903 * 10 9 8 14 14 H 1.08996 * 112.84861 * 53.80167 * 13 10 9 15 15 C 1.53778 * 113.61694 * 185.00202 * 13 10 9 16 16 C 1.53784 * 87.08132 * 139.98250 * 15 13 10 17 17 H 1.09001 * 113.60675 * 219.93197 * 16 15 13 18 18 O 1.42900 * 113.61694 * 89.11718 * 16 15 13 19 19 C 1.42895 * 114.00328 * 149.99523 * 18 16 15 20 20 C 1.50702 * 109.47238 * 179.97438 * 19 18 16 21 21 C 1.38229 * 119.99875 * 269.72626 * 20 19 18 22 22 C 1.38238 * 119.99906 * 179.78766 * 21 20 19 23 23 C 1.38232 * 119.99692 * 0.46539 * 22 21 20 24 24 C 1.38230 * 120.00179 * 359.76990 * 23 22 21 25 25 C 1.38233 * 119.99661 * 90.00316 * 20 19 18 26 26 C 1.53772 * 87.08049 * 334.56543 * 16 15 13 27 27 C 1.39136 * 119.04957 * 359.52735 * 8 4 3 28 28 C 1.38251 * 119.55805 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47344 * 89.99895 * 1 2 3 30 30 H 1.09007 * 109.46888 * 209.99433 * 1 2 3 31 31 H 1.09000 * 109.47165 * 329.99511 * 1 2 3 32 32 H 1.09004 * 109.47014 * 173.58827 * 5 4 3 33 33 H 0.96698 * 114.00230 * 294.56497 * 6 5 4 34 34 H 1.48503 * 110.00219 * 298.68331 * 7 5 4 35 35 H 1.48503 * 109.99852 * 60.00126 * 7 5 4 36 36 H 1.09004 * 113.61238 * 254.52813 * 15 13 10 37 37 H 1.09002 * 113.61287 * 25.42839 * 15 13 10 38 38 H 1.08999 * 109.47269 * 300.00196 * 19 18 16 39 39 H 1.09005 * 109.46667 * 59.99835 * 19 18 16 40 40 H 1.08005 * 120.00057 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.00072 * 180.25509 * 22 21 20 42 42 H 1.08000 * 119.99941 * 179.78561 * 23 22 21 43 43 H 1.08004 * 120.00231 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00526 * 359.97438 * 25 20 19 45 45 H 1.09002 * 113.62050 * 270.88326 * 26 16 15 46 46 H 1.09001 * 113.61340 * 139.98343 * 26 16 15 47 47 H 1.08005 * 120.81490 * 180.22226 * 27 8 4 48 48 H 1.08003 * 120.39000 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1574 1.1469 0.0000 4 6 3.4747 1.1982 -0.0005 5 6 4.1690 2.5357 -0.0011 6 8 3.9095 3.2065 -1.2359 7 14 3.5302 3.5676 1.4124 8 6 4.2284 0.0336 -0.0062 9 8 5.5863 0.0915 -0.0122 10 16 6.2111 0.1150 1.3753 11 8 7.5747 0.4382 1.1403 12 8 5.3708 0.9831 2.1234 13 6 6.0549 -1.5913 1.9711 14 1 6.4759 -2.3212 1.2797 15 6 6.5186 -1.7811 3.4249 16 6 5.3145 -2.7210 3.6034 17 1 4.8117 -2.6086 4.5640 18 8 5.5997 -4.0839 3.2824 19 6 4.8278 -5.0298 4.0250 20 6 5.2081 -6.4270 3.6074 21 6 4.5341 -7.0463 2.5716 22 6 4.8859 -8.3263 2.1856 23 6 5.9052 -8.9904 2.8419 24 6 6.5759 -8.3729 3.8809 25 6 6.2271 -7.0913 4.2640 26 6 4.6403 -1.9465 2.4588 27 6 3.5744 -1.1944 -0.0014 28 6 2.1890 -1.2026 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 5.2428 2.3877 0.1133 33 1 4.2885 2.7671 -2.0094 34 1 2.0729 3.8033 1.2512 35 1 3.7941 2.8809 2.7024 36 1 7.4817 -2.2837 3.5139 37 1 6.4567 -0.8732 4.0250 38 1 5.0234 -4.9025 5.0897 39 1 3.7679 -4.8680 3.8284 40 1 3.7352 -6.5288 2.0613 41 1 4.3620 -8.8086 1.3736 42 1 6.1777 -9.9917 2.5427 43 1 7.3721 -8.8919 4.3939 44 1 6.7510 -6.6089 5.0759 45 1 4.0648 -1.0839 2.7946 46 1 4.0871 -2.5826 1.7677 47 1 4.1330 -2.1188 -0.0021 48 1 1.6482 -2.1374 -0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_3313794_15608174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:28:52 Heat of formation + Delta-G solvation = -68.405514 kcal Electronic energy + Delta-G solvation = -35493.943372 eV Core-core repulsion = 30803.448145 eV Total energy + Delta-G solvation = -4690.495227 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.122 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.86638 -41.00139 -40.44064 -40.11351 -38.39996 -37.82155 -37.28464 -37.22095 -33.95114 -33.76043 -32.83499 -31.93871 -29.38403 -27.77777 -27.43982 -27.33636 -26.64887 -24.19108 -23.62854 -23.50347 -22.43437 -22.11460 -21.29609 -19.98888 -19.31120 -18.87600 -18.59460 -18.04383 -17.84440 -17.47121 -16.95844 -16.82951 -16.70282 -16.48628 -16.21889 -15.95273 -15.64212 -15.44769 -15.19208 -15.06641 -14.95008 -14.49471 -14.44241 -14.31718 -14.09183 -13.99469 -13.82703 -13.77146 -13.69239 -13.59786 -13.39849 -13.34150 -13.33015 -13.31090 -13.21274 -12.37671 -12.24894 -12.06038 -11.96055 -11.88917 -11.66962 -11.41861 -11.35567 -11.16421 -10.75123 -10.64130 -10.13745 -9.95085 -9.90069 -4.66338 -1.23520 -0.40538 -0.26254 0.19304 0.37278 0.80851 1.51244 2.01515 2.19568 2.20667 2.29024 2.32684 2.53538 2.72870 2.80963 2.97878 3.08415 3.12663 3.20647 3.28290 3.49316 3.54669 3.60227 3.72602 3.75084 3.80217 3.91793 3.97300 4.02805 4.10650 4.11057 4.14227 4.16958 4.21298 4.23840 4.30492 4.36115 4.45291 4.46668 4.49976 4.54219 4.56502 4.60373 4.63819 4.69822 4.88395 4.91638 4.99125 5.24571 5.40961 5.49234 5.50594 5.91419 5.95802 6.46828 6.57092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.151 3.849 3 N -0.445 5.445 4 C 0.141 3.859 5 C -0.075 4.075 6 O -0.520 6.520 7 Si 0.765 3.235 8 C 0.014 3.986 9 O -0.655 6.655 10 S 2.582 3.418 11 O -0.918 6.918 12 O -0.942 6.942 13 C -0.635 4.635 14 H 0.162 0.838 15 C -0.108 4.108 16 C 0.081 3.919 17 H 0.089 0.911 18 O -0.355 6.355 19 C 0.102 3.898 20 C -0.096 4.096 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.122 4.122 25 C -0.098 4.098 26 C -0.140 4.140 27 C -0.073 4.073 28 C -0.156 4.156 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.365 0.635 34 H -0.245 1.245 35 H -0.225 1.225 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.157 0.843 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -5.223 2.127 6.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.012 3.988 3 N -0.158 5.158 4 C 0.001 3.999 5 C -0.182 4.182 6 O -0.324 6.324 7 Si 0.659 3.341 8 C -0.031 4.031 9 O -0.612 6.612 10 S 2.678 3.322 11 O -0.916 6.916 12 O -0.940 6.940 13 C -0.743 4.743 14 H 0.180 0.820 15 C -0.146 4.146 16 C 0.022 3.978 17 H 0.107 0.893 18 O -0.274 6.274 19 C 0.026 3.974 20 C -0.096 4.096 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.178 4.178 27 C -0.100 4.100 28 C -0.176 4.176 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.212 0.788 34 H -0.169 1.169 35 H -0.149 1.149 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.175 0.825 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.236 -3.368 2.831 6.108 hybrid contribution 0.896 -3.202 -0.961 3.461 sum -3.340 -6.570 1.869 7.604 Atomic orbital electron populations 1.20855 0.87330 1.04455 1.04123 1.21701 0.98007 0.87774 0.91317 1.67513 1.07187 1.29202 1.11889 1.21962 0.89945 0.95145 0.92858 1.25510 1.00871 0.93953 0.97911 1.86821 1.79763 1.50859 1.14950 0.93816 0.80968 0.85652 0.73659 1.18764 0.77471 0.95199 1.11623 1.85720 1.25746 1.92045 1.57696 1.06183 0.74983 0.77558 0.73458 1.93669 1.33406 1.82413 1.82105 1.93676 1.67108 1.61260 1.71966 1.32148 1.07391 1.25518 1.09196 0.82046 1.22881 1.01227 1.00751 0.89786 1.22790 0.95635 0.82266 0.97136 0.89266 1.87982 1.62723 1.13196 1.63524 1.21451 0.94965 0.85702 0.95325 1.19532 0.97838 0.94484 0.97756 1.21055 0.99552 0.95182 0.95936 1.21200 0.97815 0.94989 1.00116 1.21280 0.95786 1.00094 0.95774 1.21215 1.00057 0.95196 0.97558 1.21093 0.96005 0.94873 0.99616 1.23524 0.92255 1.02212 0.99857 1.21947 0.95607 0.97075 0.95357 1.21992 0.93042 1.00318 1.02217 0.89282 0.89805 0.89647 0.91235 0.78778 1.16926 1.14885 0.87880 0.87444 0.91850 0.92029 0.86009 0.85721 0.85752 0.85661 0.85846 0.87214 0.88400 0.82516 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.25 10.17 36.01 0.37 0.61 16 2 C 0.15 0.05 6.78 -82.58 -0.56 -0.51 16 3 N -0.44 -1.56 9.17 -5.62 -0.05 -1.61 16 4 C 0.14 0.51 4.79 -82.42 -0.40 0.11 16 5 C -0.08 -0.28 2.21 36.00 0.08 -0.20 16 6 O -0.52 -1.68 12.63 -35.23 -0.45 -2.12 16 7 Si 0.76 2.51 31.23 -169.99 -5.31 -2.80 16 8 C 0.01 0.03 4.62 -39.07 -0.18 -0.15 16 9 O -0.65 -1.47 9.06 -51.79 -0.47 -1.94 16 10 S 2.58 5.48 4.75 -107.50 -0.51 4.97 16 11 O -0.92 -5.10 18.09 -67.04 -1.21 -6.31 16 12 O -0.94 -3.12 12.51 -67.04 -0.84 -3.96 16 13 C -0.64 0.64 3.95 -25.92 -0.10 0.53 16 14 H 0.16 -0.31 8.14 -51.93 -0.42 -0.74 16 15 C -0.11 0.16 7.50 -25.92 -0.19 -0.03 16 16 C 0.08 -0.15 4.37 -25.92 -0.11 -0.27 16 17 H 0.09 -0.31 7.87 -51.93 -0.41 -0.72 16 18 O -0.36 0.07 10.25 -35.23 -0.36 -0.29 16 19 C 0.10 -0.14 5.90 36.01 0.21 0.07 16 20 C -0.10 -0.01 5.51 -104.63 -0.58 -0.59 16 21 C -0.10 0.01 9.70 -39.58 -0.38 -0.37 16 22 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 23 C -0.11 0.01 10.05 -39.59 -0.40 -0.39 16 24 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 25 C -0.10 -0.02 9.70 -39.58 -0.38 -0.40 16 26 C -0.14 0.31 5.14 -25.92 -0.13 0.17 16 27 C -0.07 0.08 6.87 -39.14 -0.27 -0.19 16 28 C -0.16 0.30 9.73 -39.47 -0.38 -0.09 16 29 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.08 -0.38 8.08 -51.92 -0.42 -0.80 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 0.21 5.95 -51.93 -0.31 -0.10 16 33 H 0.37 0.04 9.11 45.56 0.42 0.45 16 34 H -0.25 -1.33 7.11 56.52 0.40 -0.93 16 35 H -0.23 -1.09 6.67 56.52 0.38 -0.71 16 36 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.11 -0.30 8.10 -51.93 -0.42 -0.72 16 38 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 39 H 0.06 -0.17 8.08 -51.93 -0.42 -0.59 16 40 H 0.12 -0.23 8.06 -52.48 -0.42 -0.65 16 41 H 0.12 -0.24 8.06 -52.48 -0.42 -0.66 16 42 H 0.12 -0.22 8.06 -52.49 -0.42 -0.64 16 43 H 0.13 -0.20 8.06 -52.48 -0.42 -0.63 16 44 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 45 H 0.11 -0.24 7.53 -51.93 -0.39 -0.63 16 46 H 0.10 -0.35 5.92 -51.93 -0.31 -0.66 16 47 H 0.16 -0.58 6.56 -52.48 -0.34 -0.93 16 48 H 0.15 -0.81 8.06 -52.48 -0.42 -1.23 16 LS Contribution 404.76 15.07 6.10 6.10 Total: 0.00 -10.48 404.76 -13.78 -24.26 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -6.48 Total: -13.83 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -4.21 Total: -2.46 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -0.05 Total: -1.61 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -3.33 Total: -14.62 kcal Atomic # 14 Polarization: 2.51 SS G_CDS: -5.31 Total: -2.80 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -0.51 Total: 4.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -10.48 -13.78 -24.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_15608174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.143 kcal (2) G-P(sol) polarization free energy of solvation -10.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds