Wall clock time and date at job start Mon Mar 8 2021 12:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31849 * 119.55419 * 2 1 4 4 C 1.31839 * 121.78052 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.65709 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47073 * 293.58375 * 5 4 3 7 7 Si 1.86296 * 109.47601 * 53.58591 * 5 4 3 8 8 C 1.38712 * 120.68417 * 0.24899 * 4 3 2 9 9 O 1.35912 * 120.47376 * 179.73105 * 8 4 3 10 10 S 1.52193 * 114.00290 * 90.00044 * 9 8 4 11 11 O 1.42102 * 104.27890 * 191.06968 * 10 9 8 12 12 O 1.42100 * 104.27821 * 318.93328 * 10 9 8 13 13 C 1.81400 * 104.44957 * 74.99903 * 10 9 8 14 14 H 1.08996 * 112.84861 * 53.80167 * 13 10 9 15 15 C 1.53778 * 113.61694 * 185.00202 * 13 10 9 16 16 C 1.53784 * 87.08132 * 139.98250 * 15 13 10 17 17 H 1.09001 * 113.60675 * 219.93197 * 16 15 13 18 18 O 1.42900 * 113.61694 * 89.11718 * 16 15 13 19 19 C 1.42895 * 114.00328 * 149.99523 * 18 16 15 20 20 C 1.50702 * 109.47238 * 179.97438 * 19 18 16 21 21 C 1.38229 * 119.99875 * 269.72626 * 20 19 18 22 22 C 1.38238 * 119.99906 * 179.78766 * 21 20 19 23 23 C 1.38232 * 119.99692 * 0.46539 * 22 21 20 24 24 C 1.38230 * 120.00179 * 359.76990 * 23 22 21 25 25 C 1.38233 * 119.99661 * 90.00316 * 20 19 18 26 26 C 1.53772 * 87.08049 * 334.56543 * 16 15 13 27 27 C 1.39136 * 119.04957 * 359.52735 * 8 4 3 28 28 C 1.38251 * 119.55805 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47344 * 89.99895 * 1 2 3 30 30 H 1.09007 * 109.46888 * 209.99433 * 1 2 3 31 31 H 1.09000 * 109.47165 * 329.99511 * 1 2 3 32 32 H 1.09004 * 109.47014 * 173.58827 * 5 4 3 33 33 H 0.96698 * 114.00230 * 294.56497 * 6 5 4 34 34 H 1.48503 * 110.00219 * 298.68331 * 7 5 4 35 35 H 1.48503 * 109.99852 * 60.00126 * 7 5 4 36 36 H 1.09004 * 113.61238 * 254.52813 * 15 13 10 37 37 H 1.09002 * 113.61287 * 25.42839 * 15 13 10 38 38 H 1.08999 * 109.47269 * 300.00196 * 19 18 16 39 39 H 1.09005 * 109.46667 * 59.99835 * 19 18 16 40 40 H 1.08005 * 120.00057 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.00072 * 180.25509 * 22 21 20 42 42 H 1.08000 * 119.99941 * 179.78561 * 23 22 21 43 43 H 1.08004 * 120.00231 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00526 * 359.97438 * 25 20 19 45 45 H 1.09002 * 113.62050 * 270.88326 * 26 16 15 46 46 H 1.09001 * 113.61340 * 139.98343 * 26 16 15 47 47 H 1.08005 * 120.81490 * 180.22226 * 27 8 4 48 48 H 1.08003 * 120.39000 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1574 1.1469 0.0000 4 6 3.4747 1.1982 -0.0005 5 6 4.1690 2.5357 -0.0011 6 8 3.9095 3.2065 -1.2359 7 14 3.5302 3.5676 1.4124 8 6 4.2284 0.0336 -0.0062 9 8 5.5863 0.0915 -0.0122 10 16 6.2111 0.1150 1.3753 11 8 7.5747 0.4382 1.1403 12 8 5.3708 0.9831 2.1234 13 6 6.0549 -1.5913 1.9711 14 1 6.4759 -2.3212 1.2797 15 6 6.5186 -1.7811 3.4249 16 6 5.3145 -2.7210 3.6034 17 1 4.8117 -2.6086 4.5640 18 8 5.5997 -4.0839 3.2824 19 6 4.8278 -5.0298 4.0250 20 6 5.2081 -6.4270 3.6074 21 6 4.5341 -7.0463 2.5716 22 6 4.8859 -8.3263 2.1856 23 6 5.9052 -8.9904 2.8419 24 6 6.5759 -8.3729 3.8809 25 6 6.2271 -7.0913 4.2640 26 6 4.6403 -1.9465 2.4588 27 6 3.5744 -1.1944 -0.0014 28 6 2.1890 -1.2026 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 5.2428 2.3877 0.1133 33 1 4.2885 2.7671 -2.0094 34 1 2.0729 3.8033 1.2512 35 1 3.7941 2.8809 2.7024 36 1 7.4817 -2.2837 3.5139 37 1 6.4567 -0.8732 4.0250 38 1 5.0234 -4.9025 5.0897 39 1 3.7679 -4.8680 3.8284 40 1 3.7352 -6.5288 2.0613 41 1 4.3620 -8.8086 1.3736 42 1 6.1777 -9.9917 2.5427 43 1 7.3721 -8.8919 4.3939 44 1 6.7510 -6.6089 5.0759 45 1 4.0648 -1.0839 2.7946 46 1 4.0871 -2.5826 1.7677 47 1 4.1330 -2.1188 -0.0021 48 1 1.6482 -2.1374 -0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_15608174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:28:50 Heat of formation + Delta-G solvation = -69.108015 kcal Electronic energy + Delta-G solvation = -35493.973834 eV Core-core repulsion = 30803.448145 eV Total energy + Delta-G solvation = -4690.525690 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.122 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.90859 -40.86109 -40.48270 -39.99625 -38.60078 -38.00490 -37.48978 -37.10194 -33.95148 -33.70564 -32.71621 -31.83412 -29.38332 -27.67352 -27.44782 -27.17459 -26.53100 -24.12843 -23.60084 -23.52773 -22.31849 -22.13732 -21.19625 -20.03185 -19.38039 -18.98853 -18.65146 -18.04029 -17.73771 -17.40656 -16.93132 -16.77103 -16.68114 -16.45222 -16.34715 -15.87969 -15.55778 -15.34896 -15.22084 -15.07232 -14.88542 -14.45409 -14.35296 -14.28526 -14.17918 -14.14607 -13.79973 -13.70879 -13.62513 -13.57989 -13.52614 -13.41490 -13.25421 -13.22001 -13.13409 -12.24085 -12.20320 -12.09070 -11.92875 -11.91822 -11.79977 -11.54635 -11.37857 -11.16808 -10.69327 -10.57655 -10.13235 -9.86876 -9.81331 -4.96652 -1.31307 -0.42318 -0.21882 0.28225 0.45405 0.72551 1.26093 1.73743 1.97522 2.18026 2.26020 2.35081 2.51649 2.71142 2.90616 3.03298 3.13121 3.15098 3.37953 3.41455 3.51384 3.61481 3.65478 3.75000 3.87471 3.89664 3.96712 4.10794 4.16694 4.20035 4.25475 4.28664 4.31198 4.32929 4.42191 4.48201 4.55180 4.60337 4.64116 4.69338 4.69986 4.71253 4.75089 4.78990 4.85098 5.04014 5.04265 5.10946 5.36168 5.50527 5.58284 5.60023 6.04548 6.13243 6.39233 6.55960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.136 3.864 3 N -0.480 5.480 4 C 0.114 3.886 5 C -0.086 4.086 6 O -0.532 6.532 7 Si 0.812 3.188 8 C 0.000 4.000 9 O -0.661 6.661 10 S 2.578 3.422 11 O -0.965 6.965 12 O -0.961 6.961 13 C -0.616 4.616 14 H 0.176 0.824 15 C -0.119 4.119 16 C 0.084 3.916 17 H 0.109 0.891 18 O -0.371 6.371 19 C 0.100 3.900 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.114 4.114 26 C -0.138 4.138 27 C -0.069 4.069 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.377 0.623 34 H -0.278 1.278 35 H -0.249 1.249 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.110 0.890 46 H 0.120 0.880 47 H 0.189 0.811 48 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -7.728 2.131 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.003 4.003 3 N -0.194 5.194 4 C -0.026 4.026 5 C -0.194 4.194 6 O -0.337 6.337 7 Si 0.710 3.290 8 C -0.045 4.045 9 O -0.619 6.619 10 S 2.679 3.321 11 O -0.963 6.963 12 O -0.960 6.960 13 C -0.727 4.727 14 H 0.193 0.807 15 C -0.158 4.158 16 C 0.024 3.976 17 H 0.126 0.874 18 O -0.290 6.290 19 C 0.024 3.976 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.132 4.132 26 C -0.176 4.176 27 C -0.096 4.096 28 C -0.155 4.155 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.225 0.775 34 H -0.205 1.205 35 H -0.174 1.174 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.206 0.794 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.552 -5.828 2.811 8.526 hybrid contribution 1.230 -2.547 -0.955 2.985 sum -4.321 -8.375 1.855 9.605 Atomic orbital electron populations 1.20961 0.85742 1.05187 1.04759 1.22265 0.99209 0.87908 0.90886 1.67452 1.07354 1.31380 1.13221 1.21864 0.90439 0.95358 0.94905 1.25543 1.00993 0.94852 0.98000 1.86754 1.80066 1.51423 1.15441 0.93233 0.78448 0.84935 0.72371 1.18980 0.77093 0.96003 1.12375 1.85682 1.26249 1.92346 1.57579 1.06128 0.73766 0.79053 0.73155 1.93603 1.35706 1.84102 1.82894 1.93642 1.66968 1.63146 1.72209 1.32033 1.09140 1.21898 1.09606 0.80691 1.23085 1.01805 1.01537 0.89392 1.22813 0.95165 0.81504 0.98105 0.87364 1.87956 1.63282 1.13840 1.63917 1.21539 0.95730 0.84652 0.95634 1.19801 0.97742 0.95394 0.97812 1.21341 0.99989 0.95315 0.95974 1.21485 0.97896 0.95324 1.00543 1.21537 0.96065 1.00831 0.95939 1.21453 1.00562 0.95520 0.97924 1.21327 0.96519 0.95182 1.00168 1.23635 0.91429 1.02430 1.00113 1.22355 0.96187 0.96895 0.94139 1.22453 0.92666 1.01066 0.99308 0.88580 0.86732 0.91256 0.91403 0.77459 1.20487 1.17446 0.87909 0.86566 0.91080 0.90252 0.84223 0.84306 0.84642 0.84736 0.85158 0.87151 0.86190 0.79411 0.78376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.64 10.17 71.24 0.72 1.36 16 2 C 0.14 -0.05 6.78 42.56 0.29 0.24 16 3 N -0.48 -3.76 9.17 -171.70 -1.57 -5.33 16 4 C 0.11 0.95 4.79 42.67 0.20 1.15 16 5 C -0.09 -0.83 2.21 71.23 0.16 -0.68 16 6 O -0.53 -4.53 12.63 -148.98 -1.88 -6.41 16 7 Si 0.81 7.43 31.23 68.60 2.14 9.58 16 8 C 0.00 0.00 4.62 22.60 0.10 0.10 16 9 O -0.66 -3.53 9.06 -61.65 -0.56 -4.09 16 10 S 2.58 13.68 4.75 -56.49 -0.27 13.41 16 11 O -0.96 -12.81 18.09 -118.57 -2.15 -14.95 16 12 O -0.96 -7.95 12.51 -118.57 -1.48 -9.43 16 13 C -0.62 1.85 3.95 31.12 0.12 1.97 16 14 H 0.18 -0.97 8.14 -2.39 -0.02 -0.99 16 15 C -0.12 0.46 7.50 31.12 0.23 0.69 16 16 C 0.08 -0.50 4.37 31.12 0.14 -0.36 16 17 H 0.11 -1.03 7.87 -2.39 -0.02 -1.05 16 18 O -0.37 0.99 10.25 -148.98 -1.53 -0.54 16 19 C 0.10 -0.49 5.90 71.24 0.42 -0.07 16 20 C -0.11 0.11 5.51 -19.87 -0.11 0.00 16 21 C -0.11 0.20 9.70 22.27 0.22 0.42 16 22 C -0.13 0.18 10.05 22.27 0.22 0.41 16 23 C -0.13 0.07 10.05 22.27 0.22 0.29 16 24 C -0.14 0.00 10.05 22.27 0.22 0.23 16 25 C -0.11 0.00 9.70 22.27 0.22 0.21 16 26 C -0.14 0.93 5.14 31.12 0.16 1.09 16 27 C -0.07 0.30 6.87 22.56 0.15 0.46 16 28 C -0.14 0.93 9.73 22.34 0.22 1.15 16 29 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.11 -1.40 8.08 -2.38 -0.02 -1.42 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 0.60 5.95 -2.39 -0.01 0.59 16 33 H 0.38 0.83 9.11 -74.06 -0.67 0.15 16 34 H -0.28 -3.93 7.11 99.48 0.71 -3.22 16 35 H -0.25 -3.12 6.67 99.48 0.66 -2.46 16 36 H 0.10 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H 0.12 -0.67 8.10 -2.39 -0.02 -0.69 16 38 H 0.07 -0.48 8.09 -2.39 -0.02 -0.50 16 39 H 0.08 -0.69 8.08 -2.38 -0.02 -0.70 16 40 H 0.14 -0.89 8.06 -2.91 -0.02 -0.91 16 41 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 42 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 43 H 0.13 -0.42 8.06 -2.91 -0.02 -0.45 16 44 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 45 H 0.11 -0.67 7.53 -2.39 -0.02 -0.69 16 46 H 0.12 -1.34 5.92 -2.39 -0.01 -1.35 16 47 H 0.19 -2.11 6.56 -2.91 -0.02 -2.13 16 48 H 0.20 -3.16 8.06 -2.91 -0.02 -3.18 16 Total: 0.00 -27.98 404.76 -3.06 -31.04 By element: Atomic # 1 Polarization: -22.25 SS G_CDS: 0.32 Total: -21.94 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 3.92 Total: 8.67 kcal Atomic # 7 Polarization: -3.76 SS G_CDS: -1.57 Total: -5.33 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -7.60 Total: -35.42 kcal Atomic # 14 Polarization: 7.43 SS G_CDS: 2.14 Total: 9.58 kcal Atomic # 16 Polarization: 13.68 SS G_CDS: -0.27 Total: 13.41 kcal Total: -27.98 -3.06 -31.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_15608174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.067 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds