Wall clock time and date at job start Mon Mar 8 2021 12:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.46929 * 2 1 4 4 C 1.34239 * 116.99796 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00146 * 359.72405 * 4 3 2 6 6 C 1.50701 * 119.99864 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46796 * 299.72391 * 6 4 3 8 8 C 1.52998 * 109.47063 * 59.72300 * 6 4 3 9 9 C 1.53001 * 109.46782 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47254 * 299.99962 * 9 8 6 11 11 F 1.39903 * 109.47153 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47294 * 300.00407 * 10 9 8 13 13 S 1.81401 * 109.47002 * 304.99541 * 12 10 9 14 14 O 1.42099 * 110.54364 * 290.92146 * 13 12 10 15 15 O 1.42101 * 110.53959 * 67.67570 * 13 12 10 16 16 O 1.52206 * 104.44983 * 179.29647 * 13 12 10 17 17 C 1.35912 * 113.99836 * 73.65397 * 16 13 12 18 18 C 1.38701 * 120.47780 * 260.86570 * 17 16 13 19 19 C 1.50697 * 119.65819 * 359.97438 * 18 17 16 20 20 O 1.42906 * 109.47261 * 326.86275 * 19 18 17 21 21 Si 1.86301 * 109.47470 * 206.86140 * 19 18 17 22 22 N 1.31841 * 120.68200 * 179.70635 * 18 17 16 23 23 C 1.31841 * 121.78236 * 0.58448 * 22 18 17 24 24 C 1.50697 * 119.55680 * 179.68300 * 23 22 18 25 25 C 1.38253 * 120.88686 * 359.70114 * 23 22 18 26 26 C 1.38539 * 119.22127 * 0.02562 * 25 23 22 27 27 C 1.53007 * 109.47056 * 60.00377 * 10 9 8 28 28 C 1.52995 * 109.46943 * 179.72691 * 6 4 3 29 29 H 1.09000 * 109.47239 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.46917 * 60.00685 * 1 2 3 31 31 H 1.08999 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47239 * 239.99529 * 2 1 3 33 33 H 1.09006 * 109.46572 * 119.99640 * 2 1 3 34 34 H 1.09001 * 109.47572 * 300.00092 * 8 6 4 35 35 H 1.08998 * 109.46859 * 60.00245 * 8 6 4 36 36 H 1.09002 * 109.46656 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47165 * 60.00504 * 9 8 6 38 38 H 1.08994 * 109.47546 * 64.99876 * 12 10 9 39 39 H 1.09007 * 109.47101 * 184.99875 * 12 10 9 40 40 H 1.09002 * 109.47298 * 86.85642 * 19 18 17 41 41 H 0.96698 * 114.00440 * 179.97438 * 20 19 18 42 42 H 1.48498 * 109.99948 * 298.68170 * 21 19 18 43 43 H 1.48503 * 109.99769 * 59.99930 * 21 19 18 44 44 H 1.09006 * 109.47364 * 270.01784 * 24 23 22 45 45 H 1.09002 * 109.47412 * 30.02072 * 24 23 22 46 46 H 1.09011 * 109.47274 * 150.02353 * 24 23 22 47 47 H 1.08001 * 120.38965 * 179.97438 * 25 23 22 48 48 H 1.08000 * 120.81048 * 179.97438 * 26 25 23 49 49 H 1.08993 * 109.46850 * 179.97438 * 27 10 9 50 50 H 1.08998 * 109.46999 * 59.99681 * 27 10 9 51 51 H 1.08998 * 109.47224 * 299.99905 * 28 6 4 52 52 H 1.09002 * 109.47451 * 60.00134 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0060 6 6 3.9208 2.9374 0.0000 7 1 3.5892 3.4674 -0.8930 8 6 3.4430 3.6874 1.2450 9 6 4.0283 5.1010 1.2447 10 6 5.5561 5.0204 1.2528 11 9 6.0913 6.3130 1.2531 12 6 6.0210 4.2762 2.5061 13 16 5.3315 5.0814 3.9781 14 8 5.9247 6.3580 4.1722 15 8 3.9211 4.9144 4.0232 16 8 5.8456 4.2476 5.1431 17 6 7.1648 4.4304 5.4140 18 6 8.1099 3.5271 4.9507 19 6 7.6682 2.3348 4.1418 20 8 6.3833 1.9022 4.5937 21 14 8.8984 0.9516 4.3518 22 7 9.3912 3.7037 5.2062 23 6 9.8233 4.7283 5.9146 24 6 11.2988 4.8773 6.1825 25 6 8.9410 5.6676 6.4151 26 6 7.5859 5.5232 6.1654 27 6 6.0339 4.2704 0.0077 28 6 5.4486 2.8574 0.0076 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3545 3.7444 1.2396 35 1 3.7746 3.1574 2.1379 36 1 3.6883 5.6352 2.1320 37 1 3.6971 5.6312 0.3519 38 1 5.6780 3.2425 2.4631 39 1 7.1097 4.2959 2.5576 40 1 7.6088 2.6117 3.0892 41 1 6.0357 1.1366 4.1161 42 1 10.2316 1.3781 3.8560 43 1 8.9885 0.5649 5.7827 44 1 11.5541 4.3604 7.1076 45 1 11.8636 4.4447 5.3567 46 1 11.5459 5.9348 6.2772 47 1 9.3037 6.5036 6.9947 48 1 6.8740 6.2415 6.5443 49 1 7.1223 4.2134 0.0132 50 1 5.7027 4.8006 -0.8852 51 1 5.7802 2.3274 0.9005 52 1 5.7889 2.3231 -0.8794 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_16464696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:38:35 Heat of formation + Delta-G solvation = -225.365116 kcal Electronic energy + Delta-G solvation = -42473.759107 eV Core-core repulsion = 37061.924617 eV Total energy + Delta-G solvation = -5411.834490 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.143 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.08881 -42.84781 -41.79711 -40.50603 -39.65119 -38.56230 -38.04721 -37.62512 -37.44607 -34.23616 -33.70722 -33.51682 -32.44322 -32.07895 -29.63335 -29.04391 -27.51196 -25.34443 -24.43213 -24.14926 -23.58495 -23.50210 -22.14516 -21.75574 -20.48719 -19.84786 -19.42192 -18.86717 -18.71593 -18.26285 -18.05450 -17.76450 -17.59833 -17.32859 -17.14199 -16.82859 -16.37603 -16.31499 -16.06247 -15.50868 -15.37845 -15.27707 -15.10764 -15.03620 -14.88969 -14.55889 -14.41228 -14.29407 -14.14481 -14.08643 -13.81225 -13.65924 -13.59014 -13.56837 -13.49239 -13.38216 -13.26115 -13.17968 -13.11695 -12.85355 -12.83914 -12.77553 -12.70227 -12.45322 -12.27535 -12.17604 -11.98958 -11.58473 -11.46227 -11.37083 -11.33206 -11.17975 -11.01244 -10.65431 -10.01907 -4.97978 -1.36951 -0.48627 -0.28678 0.74289 1.15069 1.16838 1.67469 1.68979 2.02365 2.15820 2.21640 2.45151 2.58404 2.79505 3.05408 3.07281 3.09762 3.32236 3.36826 3.42721 3.53505 3.59318 3.67888 3.69742 3.83340 3.87876 3.96453 4.03969 4.04970 4.09269 4.11693 4.23212 4.25536 4.29371 4.30911 4.37909 4.48571 4.54325 4.63268 4.65346 4.67073 4.78087 4.80181 4.85377 4.90401 4.93811 4.94119 4.98139 5.03158 5.14442 5.17968 5.25680 5.28705 5.50842 6.34356 6.69394 6.71462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.467 3.533 5 O -0.528 6.528 6 C -0.082 4.082 7 H 0.138 0.862 8 C -0.108 4.108 9 C -0.175 4.175 10 C 0.133 3.867 11 F -0.208 7.208 12 C -0.677 4.677 13 S 2.587 3.413 14 O -0.976 6.976 15 O -0.940 6.940 16 O -0.636 6.636 17 C 0.001 3.999 18 C 0.136 3.864 19 C -0.107 4.107 20 O -0.551 6.551 21 Si 0.817 3.183 22 N -0.488 5.488 23 C 0.145 3.855 24 C -0.109 4.109 25 C -0.147 4.147 26 C -0.062 4.062 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.126 0.874 41 H 0.411 0.589 42 H -0.274 1.274 43 H -0.315 1.315 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.190 0.810 48 H 0.162 0.838 49 H 0.101 0.899 50 H 0.104 0.896 51 H 0.086 0.914 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -2.827 -4.141 5.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.280 6.280 4 C 0.311 3.689 5 O -0.417 6.417 6 C -0.101 4.101 7 H 0.155 0.845 8 C -0.146 4.146 9 C -0.213 4.213 10 C 0.113 3.887 11 F -0.189 7.189 12 C -0.805 4.805 13 S 2.685 3.315 14 O -0.974 6.974 15 O -0.938 6.938 16 O -0.593 6.593 17 C -0.043 4.043 18 C -0.004 4.004 19 C -0.216 4.216 20 O -0.361 6.361 21 Si 0.721 3.279 22 N -0.203 5.203 23 C 0.008 3.992 24 C -0.166 4.166 25 C -0.167 4.167 26 C -0.089 4.089 27 C -0.160 4.160 28 C -0.145 4.145 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.206 0.794 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.264 0.736 42 H -0.201 1.201 43 H -0.243 1.243 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.207 0.793 48 H 0.179 0.821 49 H 0.119 0.881 50 H 0.122 0.878 51 H 0.105 0.895 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.121 -3.128 -3.161 5.433 hybrid contribution -0.831 0.912 0.425 1.305 sum 2.290 -2.216 -2.736 4.201 Atomic orbital electron populations 1.21835 0.91294 1.04126 1.03571 1.23232 0.96534 0.79360 1.02716 1.86524 1.24516 1.33466 1.83453 1.24015 0.80584 0.92929 0.71393 1.90667 1.60801 1.43914 1.46287 1.21302 0.97017 0.88953 1.02793 0.84468 1.21508 1.03146 0.93332 0.96566 1.22673 0.91928 0.99997 1.06661 1.20741 0.94228 0.78275 0.95430 1.92962 1.87964 1.40430 1.97532 1.31736 1.15854 1.16736 1.16207 1.05633 0.75187 0.74291 0.76366 1.93617 1.78437 1.42055 1.83320 1.93625 1.28821 1.85933 1.85381 1.85702 1.30081 1.78570 1.64926 1.18968 0.78592 0.99598 1.07169 1.21223 0.88269 0.94328 0.96575 1.25110 0.95915 1.00948 0.99577 1.86553 1.31372 1.53988 1.64187 0.94769 0.75177 0.78382 0.79595 1.67037 1.13938 1.23110 1.16193 1.22138 0.99548 0.88031 0.89507 1.20984 0.86043 1.05595 1.03971 1.22419 0.91023 1.01886 1.01337 1.22346 0.98794 0.94988 0.92732 1.22063 1.03222 0.95422 0.95283 1.21560 0.91068 0.96174 1.05659 0.91526 0.91385 0.88689 0.91126 0.91064 0.88381 0.90927 0.90843 0.86061 0.79377 0.82004 0.85691 0.73648 1.20089 1.24324 0.88494 0.90061 0.87090 0.79265 0.82064 0.88052 0.87796 0.89548 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.66 10.29 71.98 0.74 1.41 16 2 C 0.05 -0.07 6.19 71.98 0.45 0.38 16 3 O -0.36 -0.32 10.11 -51.50 -0.52 -0.84 16 4 C 0.47 0.03 7.26 71.24 0.52 0.55 16 5 O -0.53 -2.25 15.73 21.97 0.35 -1.91 16 6 C -0.08 0.44 2.63 -11.54 -0.03 0.41 16 7 H 0.14 -1.28 8.14 -2.38 -0.02 -1.30 16 8 C -0.11 0.32 4.56 30.59 0.14 0.45 16 9 C -0.17 0.21 4.62 30.59 0.14 0.35 16 10 C 0.13 -0.18 1.11 -10.79 -0.01 -0.20 16 11 F -0.21 -0.99 16.39 44.97 0.74 -0.25 16 12 C -0.68 0.91 2.61 71.98 0.19 1.10 16 13 S 2.59 20.31 4.42 -56.49 -0.25 20.06 16 14 O -0.98 -12.55 15.51 -118.57 -1.84 -14.39 16 15 O -0.94 -10.92 14.86 -118.57 -1.76 -12.68 16 16 O -0.64 -5.54 7.94 -58.60 -0.47 -6.00 16 17 C 0.00 0.01 4.78 22.60 0.11 0.12 16 18 C 0.14 0.78 5.52 42.67 0.24 1.02 16 19 C -0.11 0.10 1.74 71.23 0.12 0.23 16 20 O -0.55 0.93 10.29 -127.58 -1.31 -0.38 16 21 Si 0.82 -0.70 31.83 68.60 2.18 1.49 16 22 N -0.49 -2.92 8.19 -171.71 -1.41 -4.32 16 23 C 0.15 0.29 6.78 42.56 0.29 0.58 16 24 C -0.11 0.51 10.17 71.24 0.72 1.24 16 25 C -0.15 -0.08 9.73 22.35 0.22 0.14 16 26 C -0.06 -0.35 8.71 22.56 0.20 -0.15 16 27 C -0.12 0.89 5.19 30.58 0.16 1.05 16 28 C -0.11 0.81 4.22 30.58 0.13 0.94 16 29 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.07 -0.10 8.14 -2.39 -0.02 -0.11 16 33 H 0.07 -0.09 8.13 -2.38 -0.02 -0.11 16 34 H 0.10 -0.27 8.11 -2.39 -0.02 -0.29 16 35 H 0.07 -0.17 6.07 -2.39 -0.01 -0.19 16 36 H 0.07 0.26 5.36 -2.39 -0.01 0.24 16 37 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.19 -1.34 3.97 -2.39 -0.01 -1.35 16 39 H 0.16 -0.73 6.11 -2.39 -0.01 -0.74 16 40 H 0.13 -1.01 5.28 -2.39 -0.01 -1.03 16 41 H 0.41 -5.15 8.74 -74.06 -0.65 -5.80 16 42 H -0.27 -1.19 7.11 99.48 0.71 -0.48 16 43 H -0.31 -2.78 7.11 99.48 0.71 -2.08 16 44 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 45 H 0.08 -0.30 8.14 -2.39 -0.02 -0.31 16 46 H 0.11 -1.06 8.08 -2.38 -0.02 -1.08 16 47 H 0.19 -1.36 8.06 -2.91 -0.02 -1.39 16 48 H 0.16 0.63 7.89 -2.91 -0.02 0.61 16 49 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 50 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 51 H 0.09 -0.78 6.28 -2.39 -0.01 -0.79 16 52 H 0.10 -0.77 8.10 -2.39 -0.02 -0.79 16 Total: 0.00 -31.49 417.18 0.39 -31.10 By element: Atomic # 1 Polarization: -21.85 SS G_CDS: 0.37 Total: -21.48 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.31 Total: 9.61 kcal Atomic # 7 Polarization: -2.92 SS G_CDS: -1.41 Total: -4.32 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -5.55 Total: -36.20 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.74 Total: -0.25 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.18 Total: 1.49 kcal Atomic # 16 Polarization: 20.31 SS G_CDS: -0.25 Total: 20.06 kcal Total: -31.49 0.39 -31.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_16464696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.266 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds