Wall clock time and date at job start Mon Mar 8 2021 12:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47213 * 2 1 4 4 C 1.34233 * 116.99989 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99769 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47153 * 60.00573 * 6 4 3 8 8 C 1.52999 * 109.46684 * 179.97438 * 6 4 3 9 9 C 1.53004 * 109.46907 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.46961 * 299.99771 * 9 8 6 11 11 F 1.39896 * 109.47682 * 300.00088 * 10 9 8 12 12 C 1.53004 * 109.46961 * 180.02562 * 10 9 8 13 13 S 1.81397 * 109.46951 * 60.00270 * 12 10 9 14 14 O 1.42096 * 110.54244 * 284.20370 * 13 12 10 15 15 O 1.42101 * 110.54292 * 60.96184 * 13 12 10 16 16 O 1.52201 * 104.44807 * 172.58174 * 13 12 10 17 17 C 1.35915 * 113.99742 * 74.53127 * 16 13 12 18 18 C 1.38706 * 120.47250 * 96.00011 * 17 16 13 19 19 C 1.50710 * 119.65907 * 359.97438 * 18 17 16 20 20 O 1.42900 * 109.46930 * 38.11109 * 19 18 17 21 21 Si 1.86295 * 109.47094 * 158.11247 * 19 18 17 22 22 N 1.31840 * 120.68691 * 179.70113 * 18 17 16 23 23 C 1.31852 * 121.77414 * 0.58296 * 22 18 17 24 24 C 1.50702 * 119.55415 * 179.68004 * 23 22 18 25 25 C 1.38252 * 120.89104 * 359.70609 * 23 22 18 26 26 C 1.38539 * 119.21561 * 359.97438 * 25 23 22 27 27 C 1.52999 * 109.47123 * 60.00362 * 10 9 8 28 28 C 1.52997 * 109.47165 * 299.99718 * 6 4 3 29 29 H 1.09000 * 109.46558 * 60.00497 * 1 2 3 30 30 H 1.08997 * 109.46797 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47291 * 300.00455 * 1 2 3 32 32 H 1.09000 * 109.47413 * 239.99396 * 2 1 3 33 33 H 1.09000 * 109.46851 * 119.99966 * 2 1 3 34 34 H 1.09000 * 109.47455 * 300.00157 * 8 6 4 35 35 H 1.09001 * 109.47604 * 59.99983 * 8 6 4 36 36 H 1.08996 * 109.47135 * 60.00489 * 9 8 6 37 37 H 1.09002 * 109.46811 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46888 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47095 * 299.99786 * 12 10 9 40 40 H 1.08998 * 109.47029 * 278.11392 * 19 18 17 41 41 H 0.96697 * 113.99971 * 184.95853 * 20 19 18 42 42 H 1.48503 * 109.99857 * 299.99971 * 21 19 18 43 43 H 1.48492 * 110.00306 * 61.31805 * 21 19 18 44 44 H 1.09005 * 109.47288 * 270.02249 * 24 23 22 45 45 H 1.08999 * 109.47257 * 30.02353 * 24 23 22 46 46 H 1.08994 * 109.47246 * 150.02187 * 24 23 22 47 47 H 1.07992 * 120.39160 * 180.02562 * 25 23 22 48 48 H 1.08007 * 120.80874 * 179.97438 * 26 25 23 49 49 H 1.09000 * 109.47144 * 180.02562 * 27 10 9 50 50 H 1.09004 * 109.47445 * 59.99302 * 27 10 9 51 51 H 1.08993 * 109.47294 * 300.00572 * 28 6 4 52 52 H 1.09002 * 109.47086 * 60.00648 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4700 0.8895 8 6 5.4487 2.8572 0.0014 9 6 6.0335 4.2711 0.0015 10 6 5.5631 5.0176 -1.2484 11 9 5.9953 4.3343 -2.3901 12 6 6.1485 6.4312 -1.2487 13 16 7.9599 6.3356 -1.2474 14 8 8.4397 5.9838 0.0431 15 8 8.4246 5.6637 -2.4101 16 8 8.4164 7.7749 -1.4380 17 6 8.2736 8.5513 -0.3315 18 6 9.3415 8.7500 0.5309 19 6 10.6686 8.0989 0.2371 20 8 10.9106 8.1251 -1.1710 21 14 12.0236 9.0260 1.1174 22 7 9.2094 9.5070 1.6022 23 6 8.0663 10.0916 1.9026 24 6 7.9693 10.9406 3.1439 25 6 6.9555 9.9358 1.0944 26 6 7.0526 9.1537 -0.0450 27 6 4.0353 5.0977 -1.2498 28 6 3.4499 3.6836 -1.2499 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7838 2.3257 0.8921 35 1 5.7855 2.3244 -0.8878 36 1 5.6968 4.8035 0.8910 37 1 7.1220 4.2140 0.0021 38 1 5.8138 6.9629 -2.1394 39 1 5.8121 6.9639 -0.3592 40 1 10.6509 7.0656 0.5835 41 1 11.7116 7.6558 -1.4413 42 1 12.0581 10.4364 0.6538 43 1 11.8007 8.9791 2.5848 44 1 7.6664 10.3190 3.9866 45 1 8.9401 11.3894 3.3540 46 1 7.2311 11.7275 2.9891 47 1 6.0234 10.4186 1.3478 48 1 6.2009 9.0142 -0.6944 49 1 3.7001 5.6292 -2.1406 50 1 3.6985 5.6301 -0.3603 51 1 3.7862 3.1509 -2.1394 52 1 2.3614 3.7407 -1.2505 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_16464698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:38:41 Heat of formation + Delta-G solvation = -234.464621 kcal Electronic energy + Delta-G solvation = -40889.297830 eV Core-core repulsion = 35477.068755 eV Total energy + Delta-G solvation = -5412.229074 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.143 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.11565 -42.76631 -41.80974 -40.43546 -39.13539 -38.50052 -37.95199 -37.69306 -37.40270 -34.42264 -34.05454 -33.59669 -32.62078 -32.12224 -29.33329 -29.06457 -27.49903 -25.21678 -24.28783 -24.18654 -23.46930 -23.43325 -22.05654 -21.75805 -20.89524 -19.76260 -19.27513 -19.04088 -18.81939 -18.43433 -17.86985 -17.72390 -17.52103 -17.17625 -17.14406 -16.76707 -16.40698 -16.25542 -16.11700 -15.51591 -15.42257 -15.27646 -15.03447 -14.94862 -14.70133 -14.61394 -14.46934 -14.22967 -14.11380 -14.00373 -13.77511 -13.72970 -13.57081 -13.52017 -13.46017 -13.32830 -13.27832 -13.19142 -13.17202 -13.13229 -12.93393 -12.86829 -12.56461 -12.47917 -12.26208 -12.17411 -12.03678 -11.78849 -11.57920 -11.35775 -11.32895 -11.18307 -10.99660 -10.57684 -9.93001 -4.97624 -1.32767 -0.38314 -0.25439 0.82964 1.05439 1.21143 1.56415 1.66928 2.01265 2.18882 2.30621 2.54721 2.64352 2.82491 3.05062 3.17363 3.24588 3.29735 3.40927 3.51942 3.55097 3.64387 3.67365 3.72794 3.76758 3.94377 3.98101 4.00278 4.02441 4.09324 4.10705 4.22274 4.25933 4.29691 4.33885 4.38187 4.48845 4.52297 4.57738 4.66682 4.69926 4.72802 4.79273 4.83774 4.85841 4.88335 4.93149 5.00319 5.05076 5.06032 5.11983 5.20626 5.36859 5.40815 6.46553 6.61525 6.66125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.463 3.537 5 O -0.544 6.544 6 C -0.076 4.076 7 H 0.150 0.850 8 C -0.107 4.107 9 C -0.170 4.170 10 C 0.123 3.877 11 F -0.213 7.213 12 C -0.671 4.671 13 S 2.581 3.419 14 O -0.967 6.967 15 O -0.957 6.957 16 O -0.643 6.643 17 C 0.009 3.991 18 C 0.145 3.855 19 C -0.112 4.112 20 O -0.558 6.558 21 Si 0.822 3.178 22 N -0.499 5.499 23 C 0.137 3.863 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.086 4.086 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.101 0.899 41 H 0.407 0.593 42 H -0.304 1.304 43 H -0.279 1.279 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.115 0.885 47 H 0.205 0.795 48 H 0.201 0.799 49 H 0.105 0.895 50 H 0.131 0.869 51 H 0.056 0.944 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 6.175 4.778 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.308 3.692 5 O -0.434 6.434 6 C -0.095 4.095 7 H 0.167 0.833 8 C -0.144 4.144 9 C -0.207 4.207 10 C 0.104 3.896 11 F -0.193 7.193 12 C -0.800 4.800 13 S 2.680 3.320 14 O -0.966 6.966 15 O -0.955 6.955 16 O -0.600 6.600 17 C -0.035 4.035 18 C 0.006 3.994 19 C -0.220 4.220 20 O -0.367 6.367 21 Si 0.725 3.275 22 N -0.214 5.214 23 C -0.001 4.001 24 C -0.167 4.167 25 C -0.153 4.153 26 C -0.113 4.113 27 C -0.159 4.159 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.202 0.798 39 H 0.214 0.786 40 H 0.119 0.881 41 H 0.259 0.741 42 H -0.233 1.233 43 H -0.206 1.206 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.134 0.866 47 H 0.222 0.778 48 H 0.218 0.782 49 H 0.124 0.876 50 H 0.150 0.850 51 H 0.075 0.925 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.845 6.698 5.570 11.723 hybrid contribution -1.052 -1.115 -1.254 1.980 sum -8.897 5.583 4.316 11.356 Atomic orbital electron populations 1.21815 0.90393 1.04245 1.03910 1.23250 0.97080 0.79452 1.02288 1.86497 1.23891 1.33294 1.83455 1.24267 0.80687 0.93223 0.71032 1.90686 1.61297 1.44621 1.46752 1.21263 0.95068 0.88882 1.04242 0.83255 1.21360 0.93093 0.96145 1.03821 1.22666 1.01747 0.97351 0.98946 1.20882 0.99073 0.86657 0.83036 1.92959 1.91391 1.81616 1.53383 1.31554 1.24686 1.06329 1.17461 1.05804 0.79146 0.73153 0.73855 1.93609 1.78489 1.81811 1.42648 1.93627 1.79739 1.71089 1.51084 1.85738 1.86265 1.42932 1.45090 1.18988 0.97049 1.01224 0.86258 1.21038 0.94947 0.93597 0.89772 1.25157 1.00784 1.06482 0.89527 1.86448 1.50957 1.79769 1.19530 0.94508 0.81356 0.76202 0.75459 1.66873 1.28343 1.09372 1.16861 1.22244 0.87665 0.92749 0.97407 1.20988 1.04612 0.98888 0.92229 1.22480 1.01561 0.98421 0.92803 1.22563 0.96173 0.94283 0.98299 1.22196 0.88296 0.97644 1.07794 1.21601 1.03167 0.95340 0.95201 0.91098 0.88761 0.90948 0.91843 0.91513 0.89953 0.92547 0.84638 0.91502 0.79756 0.78553 0.88143 0.74117 1.23264 1.20602 0.88093 0.91440 0.86641 0.77756 0.78168 0.87640 0.85035 0.92488 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 0.05 6.19 71.98 0.45 0.49 16 3 O -0.35 -0.84 10.12 -51.45 -0.52 -1.36 16 4 C 0.46 2.12 7.26 71.24 0.52 2.64 16 5 O -0.54 -6.78 15.73 21.97 0.35 -6.44 16 6 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.15 -1.44 8.14 -2.39 -0.02 -1.46 16 8 C -0.11 -0.19 4.37 30.60 0.13 -0.05 16 9 C -0.17 0.21 4.57 30.59 0.14 0.35 16 10 C 0.12 -0.29 0.88 -10.79 -0.01 -0.30 16 11 F -0.21 -1.48 14.77 44.97 0.66 -0.81 16 12 C -0.67 4.19 4.29 71.98 0.31 4.50 16 13 S 2.58 16.76 4.34 -56.49 -0.25 16.51 16 14 O -0.97 -8.82 13.75 -118.57 -1.63 -10.45 16 15 O -0.96 -15.24 17.26 -118.57 -2.05 -17.29 16 16 O -0.64 -4.57 8.15 -58.77 -0.48 -5.05 16 17 C 0.01 0.04 4.58 22.60 0.10 0.15 16 18 C 0.15 1.30 5.74 42.67 0.25 1.55 16 19 C -0.11 -0.85 2.42 71.24 0.17 -0.68 16 20 O -0.56 -4.02 10.97 -128.51 -1.41 -5.43 16 21 Si 0.82 3.73 31.82 68.60 2.18 5.91 16 22 N -0.50 -3.73 8.04 -171.69 -1.38 -5.12 16 23 C 0.14 -0.11 6.78 42.56 0.29 0.18 16 24 C -0.11 0.74 10.17 71.24 0.72 1.47 16 25 C -0.13 1.04 9.74 22.34 0.22 1.26 16 26 C -0.09 0.48 8.57 22.56 0.19 0.68 16 27 C -0.12 1.16 5.00 30.61 0.15 1.32 16 28 C -0.12 0.60 5.02 30.61 0.15 0.76 16 29 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 33 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 34 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 35 H 0.06 0.42 7.76 -2.39 -0.02 0.40 16 36 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 37 H 0.07 0.24 5.81 -2.39 -0.01 0.23 16 38 H 0.18 -2.20 8.14 -2.39 -0.02 -2.22 16 39 H 0.20 -3.06 6.64 -2.39 -0.02 -3.08 16 40 H 0.10 0.68 7.24 -2.39 -0.02 0.66 16 41 H 0.41 -1.20 8.86 -74.06 -0.66 -1.86 16 42 H -0.30 -3.61 7.11 99.48 0.71 -2.90 16 43 H -0.28 -2.65 7.11 99.48 0.71 -1.94 16 44 H 0.10 -0.89 8.14 -2.38 -0.02 -0.91 16 45 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 47 H 0.21 -3.63 8.06 -2.91 -0.02 -3.65 16 48 H 0.20 -3.16 7.02 -2.91 -0.02 -3.18 16 49 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 50 H 0.13 -2.24 8.14 -2.38 -0.02 -2.26 16 51 H 0.06 -0.01 7.80 -2.39 -0.02 -0.03 16 52 H 0.11 -0.92 8.11 -2.39 -0.02 -0.94 16 Total: 0.00 -42.33 428.81 0.32 -42.01 By element: Atomic # 1 Polarization: -28.67 SS G_CDS: 0.34 Total: -28.33 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 4.50 Total: 15.85 kcal Atomic # 7 Polarization: -3.73 SS G_CDS: -1.38 Total: -5.12 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -5.74 Total: -46.02 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.66 Total: -0.81 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.18 Total: 5.91 kcal Atomic # 16 Polarization: 16.76 SS G_CDS: -0.25 Total: 16.51 kcal Total: -42.33 0.32 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_16464698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.456 kcal (2) G-P(sol) polarization free energy of solvation -42.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds