Wall clock time and date at job start Mon Mar 8 2021 12:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45196 * 109.47232 * 2 1 4 4 C 1.34234 * 117.00416 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99291 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00484 * 179.72432 * 4 3 2 7 7 H 1.08994 * 112.84634 * 49.07749 * 6 4 3 8 8 C 1.53772 * 113.61617 * 180.27819 * 6 4 3 9 9 C 1.53780 * 87.08427 * 139.98083 * 8 6 4 10 10 F 1.39899 * 113.61500 * 89.11425 * 9 8 6 11 11 C 1.52997 * 113.61705 * 220.02246 * 9 8 6 12 12 S 1.81404 * 109.47110 * 179.97438 * 11 9 8 13 13 O 1.42105 * 110.54161 * 291.62105 * 12 11 9 14 14 O 1.42096 * 110.54378 * 68.37186 * 12 11 9 15 15 O 1.52201 * 104.44967 * 179.97438 * 12 11 9 16 16 C 1.35909 * 113.99969 * 74.99995 * 15 12 11 17 17 C 1.38710 * 120.47663 * 90.00005 * 16 15 12 18 18 C 1.50704 * 119.65615 * 359.97438 * 17 16 15 19 19 O 1.42894 * 109.46915 * 113.48426 * 18 17 16 20 20 Si 1.86303 * 109.46913 * 233.48541 * 18 17 16 21 21 N 1.31838 * 120.68489 * 180.02562 * 17 16 15 22 22 C 1.31848 * 121.77971 * 359.97438 * 21 17 16 23 23 C 1.50708 * 119.55434 * 180.02562 * 22 21 17 24 24 C 1.38253 * 120.88914 * 359.97438 * 22 21 17 25 25 C 1.38537 * 119.21777 * 359.76819 * 24 22 21 26 26 C 1.53785 * 113.61144 * 277.77669 * 6 4 3 27 27 H 1.08997 * 109.46818 * 59.99972 * 1 2 3 28 28 H 1.09003 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46883 * 300.00007 * 1 2 3 30 30 H 1.09003 * 109.47568 * 239.99888 * 2 1 3 31 31 H 1.09003 * 109.47488 * 120.00106 * 2 1 3 32 32 H 1.08998 * 113.61514 * 254.52853 * 8 6 4 33 33 H 1.08997 * 113.61519 * 25.34993 * 8 6 4 34 34 H 1.09004 * 109.46948 * 299.99112 * 11 9 8 35 35 H 1.08996 * 109.47544 * 60.00134 * 11 9 8 36 36 H 1.09001 * 109.46732 * 353.48028 * 18 17 16 37 37 H 0.96696 * 114.00080 * 304.65404 * 19 18 17 38 38 H 1.48500 * 109.99874 * 298.68111 * 20 18 17 39 39 H 1.48502 * 109.99863 * 60.00225 * 20 18 17 40 40 H 1.08998 * 109.46732 * 90.00256 * 23 22 21 41 41 H 1.08995 * 109.46964 * 209.99733 * 23 22 21 42 42 H 1.08996 * 109.46984 * 330.00097 * 23 22 21 43 43 H 1.07997 * 120.39119 * 180.02562 * 24 22 21 44 44 H 1.08004 * 120.80820 * 180.25366 * 25 24 22 45 45 H 1.08995 * 113.61826 * 334.56683 * 26 6 4 46 46 H 1.09001 * 113.60993 * 105.47043 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 -0.0057 7 1 3.4738 3.5836 0.7496 8 6 5.4582 2.9680 -0.0111 9 6 5.3531 4.1394 -1.0019 10 9 5.2820 5.3921 -0.3832 11 6 6.3914 4.0876 -2.1245 12 16 6.1662 5.5139 -3.2226 13 8 4.9461 5.4013 -3.9424 14 8 6.5135 6.7183 -2.5533 15 8 7.2451 5.3503 -4.2837 16 6 6.9773 4.3825 -5.1996 17 6 6.2839 4.6863 -6.3619 18 6 5.8247 6.1004 -6.6082 19 8 6.5309 6.6426 -7.7258 20 14 3.9965 6.1060 -6.9666 21 7 6.0215 3.7507 -7.2528 22 6 6.4029 2.5005 -7.0797 23 6 6.0766 1.4714 -8.1313 24 6 7.0991 2.1211 -5.9471 25 6 7.4005 3.0741 -4.9877 26 6 3.9815 3.5726 -1.4049 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8927 3.2460 0.9491 33 1 5.9113 2.0731 -0.4375 34 1 7.3928 4.1141 -1.6947 35 1 6.2648 3.1673 -2.6945 36 1 6.0235 6.7061 -5.7240 37 1 7.4932 6.6053 -7.6387 38 1 3.7160 5.3096 -8.1882 39 1 3.2508 5.5444 -5.8117 40 1 6.8855 1.4281 -8.8606 41 1 5.9595 0.4954 -7.6604 42 1 5.1490 1.7464 -8.6332 43 1 7.4080 1.0949 -5.8137 44 1 7.9467 2.8069 -4.0951 45 1 4.0308 2.8435 -2.2137 46 1 3.2239 4.3387 -1.5699 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_3313794_16464788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:41:17 Heat of formation + Delta-G solvation = -193.046412 kcal Electronic energy + Delta-G solvation = -36343.556286 eV Core-core repulsion = 31244.198478 eV Total energy + Delta-G solvation = -5099.357808 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.112 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.30113 -42.94959 -41.91052 -40.55929 -39.42183 -38.64819 -38.02673 -37.60288 -37.52393 -33.99938 -33.76705 -32.85798 -32.04648 -29.40122 -27.58147 -27.34823 -27.01023 -24.40078 -23.90422 -23.66428 -22.47062 -21.92675 -20.94448 -20.00425 -19.51467 -19.25310 -18.93276 -18.55042 -17.93288 -17.71797 -17.67592 -17.23301 -16.83661 -16.70832 -16.49914 -16.33079 -16.17740 -15.60795 -15.47388 -15.24166 -15.10484 -14.74468 -14.69363 -14.48966 -14.42689 -14.25747 -14.09745 -13.73589 -13.72155 -13.62298 -13.60455 -13.54994 -13.29199 -13.18062 -13.13622 -13.01990 -12.99677 -12.59006 -12.53184 -12.23586 -12.06156 -11.95802 -11.61630 -11.57648 -11.50334 -11.46842 -11.22271 -10.77293 -10.19433 -4.97637 -1.48087 -0.50067 -0.27919 0.64030 0.93313 1.24465 1.50496 1.72531 1.95188 2.13241 2.17695 2.49319 2.59660 2.65040 2.66708 2.78120 3.09188 3.10547 3.16346 3.38048 3.40772 3.56871 3.62325 3.63380 3.77345 3.93477 3.97021 3.99117 4.01490 4.16303 4.22703 4.25595 4.27808 4.28868 4.35615 4.48391 4.56353 4.60068 4.67328 4.68982 4.77593 4.81212 4.85532 4.95386 5.00688 5.08766 5.31744 5.35923 6.37033 6.49936 6.54341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.477 3.523 5 O -0.527 6.527 6 C -0.110 4.110 7 H 0.149 0.851 8 C -0.112 4.112 9 C 0.092 3.908 10 F -0.187 7.187 11 C -0.654 4.654 12 S 2.573 3.427 13 O -0.957 6.957 14 O -0.947 6.947 15 O -0.655 6.655 16 C -0.006 4.006 17 C 0.113 3.887 18 C -0.085 4.085 19 O -0.531 6.531 20 Si 0.808 3.192 21 N -0.480 5.480 22 C 0.136 3.864 23 C -0.111 4.111 24 C -0.135 4.135 25 C -0.075 4.075 26 C -0.149 4.149 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.068 0.932 37 H 0.376 0.624 38 H -0.278 1.278 39 H -0.248 1.248 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.200 0.800 44 H 0.201 0.799 45 H 0.126 0.874 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -8.091 1.154 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.321 3.679 5 O -0.416 6.416 6 C -0.129 4.129 7 H 0.166 0.834 8 C -0.150 4.150 9 C 0.072 3.928 10 F -0.167 7.167 11 C -0.782 4.782 12 S 2.672 3.328 13 O -0.955 6.955 14 O -0.945 6.945 15 O -0.612 6.612 16 C -0.051 4.051 17 C -0.027 4.027 18 C -0.193 4.193 19 O -0.336 6.336 20 Si 0.706 3.294 21 N -0.194 5.194 22 C -0.003 4.003 23 C -0.168 4.168 24 C -0.154 4.154 25 C -0.101 4.101 26 C -0.187 4.187 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.208 0.792 35 H 0.204 0.796 36 H 0.086 0.914 37 H 0.225 0.775 38 H -0.204 1.204 39 H -0.173 1.173 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.218 0.782 44 H 0.218 0.782 45 H 0.144 0.856 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.652 -7.724 -0.127 7.753 hybrid contribution 2.162 -1.002 1.730 2.945 sum 1.510 -8.726 1.603 9.000 Atomic orbital electron populations 1.21842 0.90993 1.04298 1.03656 1.23292 0.96765 0.79052 1.02816 1.86535 1.24195 1.33829 1.83256 1.23579 0.80690 0.92272 0.71352 1.90668 1.60940 1.43634 1.46408 1.22588 0.97870 0.91060 1.01397 0.83352 1.23609 0.93197 0.97221 1.00953 1.21384 0.95979 0.81854 0.93540 1.92993 1.97110 1.42558 1.84065 1.31232 1.11420 1.23058 1.12504 1.06183 0.73652 0.77466 0.75503 1.93665 1.46526 1.87413 1.67931 1.93649 1.82569 1.43222 1.75088 1.85742 1.67109 1.59620 1.48767 1.19067 1.06650 0.87587 0.91763 1.21885 0.93261 0.97555 0.89985 1.25526 1.12640 0.87884 0.93239 1.86752 1.23554 1.82655 1.40638 0.93179 0.70571 0.87333 0.78272 1.67467 1.20347 1.02075 1.29498 1.22315 0.91140 0.90954 0.95862 1.20978 1.03511 0.95933 0.96361 1.22534 0.97643 1.03079 0.92130 1.22440 0.96081 0.88749 1.02872 1.23887 0.95967 1.02021 0.96801 0.91406 0.88431 0.91384 0.90929 0.91061 0.86921 0.84949 0.79172 0.79556 0.91408 0.77481 1.20407 1.17283 0.88351 0.86815 0.91228 0.78248 0.78217 0.85607 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 10.29 71.98 0.74 1.42 16 2 C 0.05 -0.06 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.66 10.22 -51.45 -0.53 -1.18 16 4 C 0.48 0.61 7.48 71.24 0.53 1.14 16 5 O -0.53 -2.87 15.65 21.95 0.34 -2.52 16 6 C -0.11 0.37 4.24 -11.02 -0.05 0.33 16 7 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 8 C -0.11 0.65 6.86 31.12 0.21 0.86 16 9 C 0.09 -0.27 1.62 -10.27 -0.02 -0.29 16 10 F -0.19 -0.63 16.28 44.97 0.73 0.10 16 11 C -0.65 4.27 5.24 71.98 0.38 4.65 16 12 S 2.57 10.64 4.48 -56.49 -0.25 10.39 16 13 O -0.96 -7.42 13.17 -118.57 -1.56 -8.98 16 14 O -0.95 -11.63 17.54 -118.57 -2.08 -13.71 16 15 O -0.65 -2.04 9.06 -61.62 -0.56 -2.60 16 16 C -0.01 -0.01 4.78 22.60 0.11 0.10 16 17 C 0.11 0.82 4.73 42.67 0.20 1.03 16 18 C -0.09 -0.77 2.24 71.24 0.16 -0.61 16 19 O -0.53 -4.21 12.68 -148.98 -1.89 -6.10 16 20 Si 0.81 7.23 31.21 68.60 2.14 9.37 16 21 N -0.48 -3.39 9.16 -171.69 -1.57 -4.96 16 22 C 0.14 -0.13 6.78 42.56 0.29 0.16 16 23 C -0.11 0.68 10.17 71.24 0.72 1.40 16 24 C -0.13 1.05 9.74 22.34 0.22 1.27 16 25 C -0.07 0.50 8.62 22.56 0.19 0.70 16 26 C -0.15 0.50 7.07 31.12 0.22 0.72 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.07 -0.11 8.13 -2.39 -0.02 -0.13 16 31 H 0.07 -0.07 8.13 -2.39 -0.02 -0.09 16 32 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.13 -1.04 7.39 -2.39 -0.02 -1.06 16 34 H 0.19 -2.43 8.14 -2.39 -0.02 -2.45 16 35 H 0.19 -2.54 6.45 -2.39 -0.02 -2.55 16 36 H 0.07 0.57 5.95 -2.39 -0.01 0.55 16 37 H 0.38 0.66 9.03 -74.06 -0.67 -0.01 16 38 H -0.28 -3.84 7.11 99.48 0.71 -3.13 16 39 H -0.25 -3.05 6.65 99.48 0.66 -2.39 16 40 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.11 -1.38 8.08 -2.39 -0.02 -1.40 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.20 -3.32 8.06 -2.91 -0.02 -3.35 16 44 H 0.20 -3.24 7.60 -2.91 -0.02 -3.26 16 45 H 0.13 -0.77 7.91 -2.39 -0.02 -0.79 16 46 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -30.83 399.26 -0.51 -31.34 By element: Atomic # 1 Polarization: -24.75 SS G_CDS: 0.36 Total: -24.39 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.36 Total: 13.27 kcal Atomic # 7 Polarization: -3.39 SS G_CDS: -1.57 Total: -4.96 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -6.27 Total: -35.11 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.73 Total: 0.10 kcal Atomic # 14 Polarization: 7.23 SS G_CDS: 2.14 Total: 9.37 kcal Atomic # 16 Polarization: 10.64 SS G_CDS: -0.25 Total: 10.39 kcal Total: -30.83 -0.51 -31.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_16464788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.711 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds