Wall clock time and date at job start Mon Mar 8 2021 10:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99398 * 2 1 4 4 C 1.53001 * 112.85216 * 304.00660 * 3 2 1 5 5 F 1.39900 * 109.46887 * 66.25160 * 4 3 2 6 6 F 1.39903 * 109.47009 * 306.25514 * 4 3 2 7 7 F 1.39895 * 109.47026 * 186.25198 * 4 3 2 8 8 C 1.53784 * 113.61114 * 172.81099 * 3 2 1 9 9 C 1.53960 * 87.01859 * 270.77121 * 8 3 2 10 10 H 1.09002 * 113.66215 * 220.06397 * 9 8 3 11 11 C 1.53001 * 113.60961 * 89.20257 * 9 8 3 12 12 S 1.81397 * 109.47087 * 87.46619 * 11 9 8 13 13 O 1.42094 * 110.54408 * 291.61726 * 12 11 9 14 14 O 1.42102 * 110.54558 * 68.37498 * 12 11 9 15 15 O 1.52207 * 104.44740 * 179.97438 * 12 11 9 16 16 C 1.35909 * 113.99774 * 76.05498 * 15 12 11 17 17 C 1.38702 * 120.47372 * 95.82683 * 16 15 12 18 18 C 1.50705 * 119.65927 * 0.02562 * 17 16 15 19 19 O 1.42906 * 109.47064 * 244.11055 * 18 17 16 20 20 Si 1.86293 * 109.46948 * 124.10871 * 18 17 16 21 21 N 1.31838 * 120.68570 * 180.02562 * 17 16 15 22 22 C 1.31851 * 121.77657 * 359.97438 * 21 17 16 23 23 C 1.50703 * 119.55374 * 180.02562 * 22 21 17 24 24 C 1.38249 * 120.88790 * 359.97438 * 22 21 17 25 25 C 1.38529 * 119.22273 * 359.76978 * 24 22 21 26 26 C 1.53780 * 87.11168 * 334.63638 * 9 8 3 27 27 H 1.09002 * 109.46420 * 186.07120 * 1 2 3 28 28 H 1.08993 * 109.47452 * 306.07544 * 1 2 3 29 29 H 1.08995 * 109.47392 * 66.07671 * 1 2 3 30 30 H 1.09003 * 113.61353 * 25.35167 * 8 3 2 31 31 H 1.08997 * 113.61459 * 156.25149 * 8 3 2 32 32 H 1.09004 * 109.46564 * 207.46540 * 11 9 8 33 33 H 1.09001 * 109.47361 * 327.45937 * 11 9 8 34 34 H 1.08995 * 109.46628 * 4.10918 * 18 17 16 35 35 H 0.96701 * 113.99866 * 65.07299 * 19 18 17 36 36 H 1.48500 * 109.99864 * 178.67941 * 20 18 17 37 37 H 1.48500 * 110.00333 * 300.00297 * 20 18 17 38 38 H 1.09001 * 109.47007 * 89.99987 * 23 22 21 39 39 H 1.09003 * 109.47016 * 209.99851 * 23 22 21 40 40 H 1.09000 * 109.47421 * 329.99772 * 23 22 21 41 41 H 1.08009 * 120.39058 * 180.02562 * 24 22 21 42 42 H 1.08007 * 120.81484 * 180.25492 * 25 24 22 43 43 H 1.08999 * 113.61762 * 270.81470 * 26 9 8 44 44 H 1.08998 * 113.61301 * 139.90924 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.5314 2.1691 -1.1688 5 9 0.1667 2.4389 -1.0208 6 9 1.7439 1.4859 -2.3710 7 9 2.2457 3.3718 -1.1832 8 6 3.5379 1.2998 0.1763 9 6 3.2823 1.3576 1.6935 10 1 3.9684 2.0149 2.2279 11 6 3.1502 -0.0201 2.3456 12 16 4.7932 -0.6243 2.8208 13 8 5.5700 -0.9161 1.6674 14 8 5.3237 0.1565 3.8831 15 8 4.5301 -1.9847 3.4507 16 6 4.2611 -2.9675 2.5514 17 6 5.2692 -3.8114 2.1091 18 6 6.6718 -3.6355 2.6317 19 8 7.5376 -3.2655 1.5567 20 14 7.2606 -5.2363 3.3807 21 7 5.0131 -4.7658 1.2365 22 6 3.8017 -4.9573 0.7525 23 6 3.5652 -6.0641 -0.2426 24 6 2.7453 -4.1572 1.1464 25 6 2.9694 -3.1456 2.0659 26 6 1.9320 2.0147 1.3624 27 1 -0.3632 -1.0220 0.1087 28 1 -0.3634 0.6051 0.8305 29 1 -0.3634 0.4167 -0.9393 30 1 4.0119 0.3750 -0.1526 31 1 4.0263 2.1906 -0.2184 32 1 2.5207 0.0566 3.2322 33 1 2.6980 -0.7151 1.6381 34 1 6.6811 -2.8538 3.3912 35 1 7.3373 -2.4023 1.1695 36 1 8.6542 -5.0853 3.8711 37 1 6.3684 -5.6320 4.4999 38 1 3.3030 -6.9796 0.2877 39 1 2.7499 -5.7846 -0.9100 40 1 4.4715 -6.2286 -0.8254 41 1 1.7561 -4.3214 0.7451 42 1 2.1620 -2.5079 2.3947 43 1 1.9805 3.1013 1.2924 44 1 1.1114 1.6662 1.9895 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_3313794_17541816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:27 Heat of formation + Delta-G solvation = -251.692343 kcal Electronic energy + Delta-G solvation = -38881.632715 eV Core-core repulsion = 33287.732210 eV Total energy + Delta-G solvation = -5593.900505 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.33187 -48.87791 -48.74863 -42.83929 -41.67311 -40.45896 -38.48374 -37.72928 -37.66661 -37.30851 -33.90674 -33.75598 -32.00128 -29.36270 -28.58118 -28.03228 -27.41931 -27.20755 -24.50104 -23.66696 -23.48589 -22.01777 -21.01988 -20.13900 -19.77967 -19.59511 -19.43888 -19.17243 -18.89553 -18.22657 -17.60104 -17.35890 -16.87863 -16.77440 -16.63632 -16.19475 -16.04430 -15.80206 -15.75052 -15.65941 -15.52483 -15.25179 -15.21849 -15.09578 -15.01971 -14.94676 -14.83096 -14.55652 -14.28120 -14.16859 -13.90434 -13.67133 -13.64512 -13.49614 -13.40942 -13.36826 -13.27901 -13.23878 -13.20913 -12.59937 -12.45233 -12.36427 -12.08023 -11.73798 -11.70259 -11.45748 -11.13785 -11.05468 -10.66803 -10.09260 -4.72985 -1.35100 -0.40051 -0.24823 0.76380 1.38082 1.40180 1.72079 1.79576 2.00817 2.24710 2.25298 2.35594 2.43942 2.60815 2.63664 2.75068 2.88186 2.95668 3.11995 3.16036 3.27458 3.32194 3.42320 3.56966 3.65179 3.89352 3.92738 3.93536 4.01783 4.03103 4.10599 4.13636 4.20824 4.23741 4.26023 4.33505 4.39796 4.43317 4.49770 4.51470 4.54748 4.57884 4.72818 4.93867 5.27862 5.41673 6.56635 6.67705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.335 6.335 3 C 0.043 3.957 4 C 0.438 3.562 5 F -0.180 7.180 6 F -0.172 7.172 7 F -0.173 7.173 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.111 0.889 11 C -0.641 4.641 12 S 2.588 3.412 13 O -0.945 6.945 14 O -0.918 6.918 15 O -0.658 6.658 16 C 0.011 3.989 17 C 0.142 3.858 18 C -0.081 4.081 19 O -0.520 6.520 20 Si 0.777 3.223 21 N -0.436 5.436 22 C 0.155 3.845 23 C -0.111 4.111 24 C -0.148 4.148 25 C -0.083 4.083 26 C -0.136 4.136 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.377 0.623 36 H -0.246 1.246 37 H -0.252 1.252 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 -2.124 -1.221 7.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.253 6.253 3 C 0.001 3.999 4 C 0.383 3.617 5 F -0.161 7.161 6 F -0.154 7.154 7 F -0.154 7.154 8 C -0.161 4.161 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.768 4.768 12 S 2.683 3.317 13 O -0.944 6.944 14 O -0.916 6.916 15 O -0.615 6.615 16 C -0.033 4.033 17 C 0.001 3.999 18 C -0.189 4.189 19 O -0.326 6.326 20 Si 0.673 3.327 21 N -0.149 5.149 22 C 0.016 3.984 23 C -0.168 4.168 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.174 4.174 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.091 0.909 35 H 0.227 0.773 36 H -0.170 1.170 37 H -0.176 1.176 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.133 0.867 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.659 -3.778 -0.336 6.007 hybrid contribution -2.569 3.149 0.139 4.067 sum -7.227 -0.628 -0.197 7.257 Atomic orbital electron populations 1.23246 0.79273 1.04323 1.02080 1.88020 1.21282 1.21924 1.94035 1.23936 0.98200 0.85709 0.92070 1.21114 0.75507 0.79937 0.85156 1.93190 1.32936 1.94299 1.95724 1.93235 1.94430 1.79308 1.48403 1.93196 1.78038 1.47550 1.96649 1.23502 0.90558 1.07022 0.95067 1.21732 1.00001 0.93357 0.96023 0.87126 1.30864 1.25784 1.07655 1.12473 1.05766 0.77318 0.74121 0.74496 1.93589 1.66831 1.80938 1.53012 1.93685 1.75932 1.67824 1.54156 1.85742 1.89358 1.35227 1.51201 1.18849 0.95339 0.93902 0.95178 1.21941 0.96340 0.89970 0.91654 1.25612 0.87199 1.12796 0.93304 1.86709 1.54048 1.42074 1.49760 0.92012 0.79757 0.81214 0.79719 1.67430 1.22015 1.17136 1.08272 1.21735 0.87758 0.94863 0.94010 1.20870 1.04167 0.95164 0.96611 1.21997 1.01622 0.95274 0.97902 1.21887 0.94697 0.98862 0.95538 1.23596 0.98221 1.01687 0.93945 0.88037 0.92525 0.92310 0.87240 0.85715 0.83442 0.83007 0.90905 0.77345 1.16993 1.17627 0.89214 0.89898 0.89270 0.82761 0.82882 0.86686 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.85 101.05 1.00 0.97 16 2 O -0.33 0.60 8.53 -35.23 -0.30 0.30 16 3 C 0.04 -0.07 0.81 -89.80 -0.07 -0.14 16 4 C 0.44 -0.01 2.40 37.16 0.09 0.08 16 5 F -0.18 -0.03 14.71 2.25 0.03 0.00 16 6 F -0.17 -0.28 17.25 2.25 0.04 -0.24 16 7 F -0.17 -0.04 15.72 2.25 0.04 0.00 16 8 C -0.12 0.24 6.93 -25.82 -0.18 0.06 16 9 C -0.09 0.24 3.85 -89.71 -0.35 -0.10 16 10 H 0.11 -0.40 8.13 -51.93 -0.42 -0.82 16 11 C -0.64 1.76 4.98 37.16 0.18 1.94 16 12 S 2.59 2.68 5.15 -107.50 -0.55 2.13 16 13 O -0.95 -2.07 14.60 -67.03 -0.98 -3.05 16 14 O -0.92 -4.01 18.09 -67.04 -1.21 -5.22 16 15 O -0.66 -1.05 8.85 -51.78 -0.46 -1.51 16 16 C 0.01 0.02 4.67 -39.07 -0.18 -0.17 16 17 C 0.14 0.39 4.85 -82.42 -0.40 -0.01 16 18 C -0.08 -0.28 2.29 36.01 0.08 -0.20 16 19 O -0.52 -2.11 12.63 -35.23 -0.45 -2.56 16 20 Si 0.78 1.67 32.78 -169.99 -5.57 -3.91 16 21 N -0.44 -0.81 9.26 -5.62 -0.05 -0.86 16 22 C 0.15 -0.12 6.78 -82.58 -0.56 -0.68 16 23 C -0.11 0.39 10.17 36.01 0.37 0.75 16 24 C -0.15 0.37 9.73 -39.47 -0.38 -0.02 16 25 C -0.08 0.14 8.61 -39.14 -0.34 -0.20 16 26 C -0.14 0.45 6.68 -25.92 -0.17 0.28 16 27 H 0.10 -0.52 8.14 -51.93 -0.42 -0.95 16 28 H 0.06 -0.24 7.19 -51.93 -0.37 -0.61 16 29 H 0.06 -0.13 6.34 -51.93 -0.33 -0.46 16 30 H 0.11 -0.17 8.10 -51.93 -0.42 -0.59 16 31 H 0.12 -0.39 7.28 -51.93 -0.38 -0.77 16 32 H 0.15 -0.76 8.14 -51.92 -0.42 -1.19 16 33 H 0.15 -0.54 4.16 -51.92 -0.22 -0.75 16 34 H 0.07 0.24 6.80 -51.93 -0.35 -0.11 16 35 H 0.38 1.13 7.59 45.56 0.35 1.47 16 36 H -0.25 -0.94 7.11 56.52 0.40 -0.54 16 37 H -0.25 -0.80 7.11 56.52 0.40 -0.39 16 38 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 39 H 0.08 -0.43 8.08 -51.93 -0.42 -0.85 16 40 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 41 H 0.15 -0.88 8.06 -52.48 -0.42 -1.30 16 42 H 0.15 -0.76 6.95 -52.48 -0.36 -1.12 16 43 H 0.11 -0.47 7.71 -51.93 -0.40 -0.87 16 44 H 0.10 -0.44 7.31 -51.93 -0.38 -0.82 16 LS Contribution 380.63 15.07 5.74 5.74 Total: 0.00 -9.11 380.63 -9.67 -18.78 By element: Atomic # 1 Polarization: -7.15 SS G_CDS: -5.02 Total: -12.17 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.91 Total: 2.58 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -0.05 Total: -0.86 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -3.40 Total: -12.04 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.11 Total: -0.24 kcal Atomic # 14 Polarization: 1.67 SS G_CDS: -5.57 Total: -3.91 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -0.55 Total: 2.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -9.11 -9.67 -18.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_3313794_17541816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -232.916 kcal (2) G-P(sol) polarization free energy of solvation -9.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds