Wall clock time and date at job start Mon Mar 8 2021 13:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47564 * 2 1 4 4 C 1.53002 * 109.47622 * 120.00554 * 2 1 3 5 5 C 1.52991 * 109.47622 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46992 * 299.99868 * 5 4 2 7 7 H 1.09002 * 109.46877 * 299.99781 * 6 5 4 8 8 N 1.46502 * 109.47199 * 180.02562 * 6 5 4 9 9 S 1.65598 * 120.00035 * 145.00009 * 8 6 5 10 10 O 1.42106 * 106.40127 * 311.46083 * 9 8 6 11 11 O 1.42103 * 106.40311 * 178.53971 * 9 8 6 12 12 C 1.76199 * 107.21897 * 64.99795 * 9 8 6 13 13 C 1.38230 * 120.00102 * 90.00101 * 12 9 8 14 14 C 1.38235 * 120.00326 * 179.97438 * 13 12 9 15 15 C 1.38234 * 119.99814 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00196 * 179.97438 * 15 14 13 17 17 O 1.42902 * 109.46735 * 65.00425 * 16 15 14 18 18 Si 1.86301 * 109.47185 * 185.00151 * 16 15 14 19 19 C 1.38240 * 120.00061 * 0.07178 * 15 14 13 20 20 C 1.38234 * 119.99689 * 359.90912 * 19 15 14 21 21 C 1.52998 * 109.47153 * 59.99655 * 6 5 4 22 22 C 1.52997 * 109.47575 * 300.00356 * 21 6 5 23 23 H 1.09007 * 109.47182 * 299.99536 * 1 2 3 24 24 H 1.09003 * 109.47595 * 59.99395 * 1 2 3 25 25 H 1.08996 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47104 * 59.99163 * 4 2 1 27 27 H 1.09007 * 109.46769 * 300.00163 * 4 2 1 28 28 H 1.09003 * 109.47595 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47564 * 59.99446 * 5 4 2 30 30 H 0.96998 * 119.99800 * 324.99152 * 8 6 5 31 31 H 1.08000 * 120.00376 * 0.02562 * 13 12 9 32 32 H 1.08000 * 120.00616 * 179.72578 * 14 13 12 33 33 H 1.09000 * 109.46902 * 305.00419 * 16 15 14 34 34 H 0.96698 * 114.00410 * 59.99661 * 17 16 15 35 35 H 1.48501 * 110.00099 * 58.68332 * 18 16 15 36 36 H 1.48503 * 109.99900 * 180.02562 * 18 16 15 37 37 H 1.08005 * 120.00107 * 179.97438 * 19 15 14 38 38 H 1.07999 * 119.99751 * 180.02562 * 20 19 15 39 39 H 1.09002 * 109.47126 * 60.00278 * 21 6 5 40 40 H 1.09007 * 109.47092 * 179.97438 * 21 6 5 41 41 H 1.09002 * 109.46830 * 300.00104 * 22 21 6 42 42 H 1.08998 * 109.47480 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0794 -1.4435 -0.0005 7 1 3.7157 -2.4710 -0.0003 8 7 5.5444 -1.4446 -0.0005 9 16 6.3714 -2.7449 -0.6067 10 8 5.7895 -3.9002 -0.0185 11 8 7.7525 -2.4287 -0.4972 12 6 6.0161 -2.8316 -2.3304 13 6 6.8168 -2.1609 -3.2357 14 6 6.5384 -2.2293 -4.5880 15 6 5.4595 -2.9690 -5.0350 16 6 5.1555 -3.0431 -6.5092 17 8 6.2219 -3.7156 -7.1821 18 14 3.5673 -3.9816 -6.7693 19 6 4.6581 -3.6390 -4.1295 20 6 4.9369 -3.5708 -2.7772 21 6 3.5693 -0.7222 -1.2497 22 6 2.0394 -0.7215 -1.2493 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6766 -1.7490 1.2492 27 1 1.6767 -0.2076 2.1392 28 1 3.9334 -1.2362 2.1385 29 1 3.9337 0.3055 1.2486 30 1 6.0300 -0.6836 0.3544 31 1 7.6605 -1.5840 -2.8867 32 1 7.1613 -1.7016 -5.2951 33 1 5.0516 -2.0348 -6.9099 34 1 6.3717 -4.6205 -6.8757 35 1 2.4565 -3.3100 -6.0481 36 1 3.2567 -4.0624 -8.2193 37 1 3.8149 -4.2166 -4.4786 38 1 4.3111 -4.0946 -2.0698 39 1 3.9330 0.3054 -1.2499 40 1 3.9327 -1.2360 -2.1397 41 1 1.6756 -1.7491 -1.2491 42 1 1.6760 -0.2081 -2.1395 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:50 Heat of formation + Delta-G solvation = -94.736949 kcal Electronic energy + Delta-G solvation = -24942.528563 eV Core-core repulsion = 21401.160465 eV Total energy + Delta-G solvation = -3541.368098 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.80415 -40.15736 -38.22881 -37.80484 -36.85879 -36.00698 -33.10395 -32.31165 -31.85975 -31.65305 -27.30702 -26.68622 -24.18650 -23.82499 -23.03631 -22.43264 -21.17632 -20.44719 -19.26676 -18.60823 -18.20147 -17.64485 -16.91542 -16.61075 -16.12411 -15.88701 -15.83956 -15.53307 -15.38113 -15.30561 -14.87513 -14.67241 -14.45873 -14.26226 -14.07345 -13.87642 -13.36488 -13.28331 -13.11531 -13.04984 -13.00341 -12.75729 -12.70244 -12.45473 -12.24525 -12.08846 -12.03888 -11.84547 -11.66058 -11.42343 -11.29000 -10.69618 -10.58547 -10.37029 -10.21255 -5.17913 -0.72183 -0.39850 0.10957 1.09739 1.48230 1.82396 1.85862 2.27975 2.73243 3.21588 3.25451 3.39666 3.49222 3.57875 3.64403 3.71024 3.73892 3.92562 4.01034 4.07315 4.16020 4.23840 4.27916 4.30775 4.37595 4.40247 4.47075 4.50587 4.64247 4.73119 4.73637 4.81957 4.86582 4.90455 4.92219 4.97775 5.04050 5.06294 5.16206 5.18396 5.24473 5.27752 5.42490 5.61041 5.85643 6.37417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.122 4.122 6 C 0.148 3.852 7 H 0.094 0.906 8 N -1.112 6.112 9 S 2.693 3.307 10 O -0.952 6.952 11 O -0.956 6.956 12 C -0.673 4.673 13 C -0.016 4.016 14 C -0.113 4.113 15 C -0.063 4.063 16 C -0.077 4.077 17 O -0.535 6.535 18 Si 0.687 3.313 19 C -0.137 4.137 20 C -0.015 4.015 21 C -0.142 4.142 22 C -0.113 4.113 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.420 0.580 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.381 0.619 35 H -0.254 1.254 36 H -0.251 1.251 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 0.959 -0.389 3.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.161 4.161 6 C 0.041 3.959 7 H 0.112 0.888 8 N -0.871 5.871 9 S 2.782 3.218 10 O -0.942 6.942 11 O -0.946 6.946 12 C -0.759 4.759 13 C -0.035 4.035 14 C -0.132 4.132 15 C -0.064 4.064 16 C -0.188 4.188 17 O -0.341 6.341 18 Si 0.589 3.411 19 C -0.155 4.155 20 C -0.034 4.034 21 C -0.182 4.182 22 C -0.152 4.152 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.255 0.745 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.229 0.771 35 H -0.179 1.179 36 H -0.175 1.175 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.113 0.819 -0.627 4.240 hybrid contribution 0.251 1.187 -0.522 1.321 sum -3.861 2.006 -1.149 4.501 Atomic orbital electron populations 1.21837 0.94970 1.02016 1.01862 1.21183 0.95727 0.99753 0.94667 0.91038 1.21598 0.94268 1.01353 0.98029 1.21794 0.96230 1.01126 0.96985 1.20936 0.77744 1.01120 0.96070 0.88838 1.55625 1.15654 1.38185 1.77640 1.01960 0.72959 0.73234 0.73635 1.93612 1.78675 1.47080 1.74854 1.93619 1.30552 1.84088 1.86332 1.31005 1.07156 1.11662 1.26124 1.20988 0.96019 0.93523 0.92953 1.21185 0.97278 0.99160 0.95589 1.20738 0.94651 0.94781 0.96202 1.25220 1.01597 1.02798 0.89163 1.86538 1.53678 1.31504 1.62356 0.94659 0.75072 0.89544 0.81869 1.21130 1.00205 1.00814 0.93377 1.20892 0.93292 0.92844 0.96352 1.22153 0.96404 1.01923 0.97676 1.21574 0.94333 1.01215 0.98043 0.92539 0.92662 0.92538 0.91390 0.91202 0.90758 0.91073 0.74533 0.83934 0.84584 0.86394 0.77101 1.17884 1.17547 0.84586 0.83781 0.90963 0.91389 0.91535 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.19 37.15 0.34 0.63 16 2 C -0.09 0.20 2.72 -90.62 -0.25 -0.04 16 3 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 4 C -0.11 0.26 5.20 -26.73 -0.14 0.12 16 5 C -0.12 0.27 5.45 -26.73 -0.15 0.13 16 6 C 0.15 -0.27 2.79 -67.93 -0.19 -0.46 16 7 H 0.09 -0.15 7.50 -51.93 -0.39 -0.54 16 8 N -1.11 1.68 5.47 -4.89 -0.03 1.66 16 9 S 2.69 3.15 5.72 -107.50 -0.61 2.53 16 10 O -0.95 -3.64 16.62 -57.17 -0.95 -4.59 16 11 O -0.96 -3.90 17.28 -57.17 -0.99 -4.89 16 12 C -0.67 -0.11 5.06 -39.59 -0.20 -0.31 16 13 C -0.02 0.00 9.52 -39.59 -0.38 -0.38 16 14 C -0.11 0.04 9.69 -39.58 -0.38 -0.35 16 15 C -0.06 0.06 5.35 -104.62 -0.56 -0.50 16 16 C -0.08 0.10 2.80 36.01 0.10 0.20 16 17 O -0.54 0.33 12.83 -35.23 -0.45 -0.12 16 18 Si 0.69 -1.41 29.80 -169.99 -5.07 -6.48 16 19 C -0.14 0.20 8.67 -39.58 -0.34 -0.14 16 20 C -0.01 0.01 8.58 -39.58 -0.34 -0.33 16 21 C -0.14 0.31 5.53 -26.73 -0.15 0.16 16 22 C -0.11 0.25 5.20 -26.73 -0.14 0.11 16 23 H 0.06 -0.10 8.14 -51.92 -0.42 -0.53 16 24 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 27 H 0.07 -0.16 8.14 -51.92 -0.42 -0.58 16 28 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 29 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 30 H 0.42 -1.33 8.84 -34.47 -0.30 -1.64 16 31 H 0.14 -0.14 7.62 -52.49 -0.40 -0.54 16 32 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 33 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.38 -1.65 8.70 45.56 0.40 -1.26 16 35 H -0.25 0.01 7.11 56.52 0.40 0.41 16 36 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 37 H 0.14 -0.50 4.91 -52.48 -0.26 -0.76 16 38 H 0.14 -0.30 7.62 -52.49 -0.40 -0.70 16 39 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 40 H 0.07 -0.13 6.17 -51.92 -0.32 -0.45 16 41 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 42 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 LS Contribution 344.64 15.07 5.19 5.19 Total: 0.00 -8.54 344.64 -12.03 -20.57 By element: Atomic # 1 Polarization: -6.35 SS G_CDS: -6.36 Total: -12.71 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.77 Total: -1.17 kcal Atomic # 7 Polarization: 1.68 SS G_CDS: -0.03 Total: 1.66 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -2.39 Total: -9.60 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.07 Total: -6.48 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -0.61 Total: 2.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -8.54 -12.03 -20.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.164 kcal (2) G-P(sol) polarization free energy of solvation -8.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds