Wall clock time and date at job start Mon Mar 8 2021 13:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47564 * 2 1 4 4 C 1.53002 * 109.47622 * 120.00554 * 2 1 3 5 5 C 1.52991 * 109.47622 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46992 * 299.99868 * 5 4 2 7 7 H 1.09002 * 109.46877 * 299.99781 * 6 5 4 8 8 N 1.46502 * 109.47199 * 180.02562 * 6 5 4 9 9 S 1.65598 * 120.00035 * 145.00009 * 8 6 5 10 10 O 1.42106 * 106.40127 * 311.46083 * 9 8 6 11 11 O 1.42103 * 106.40311 * 178.53971 * 9 8 6 12 12 C 1.76199 * 107.21897 * 64.99795 * 9 8 6 13 13 C 1.38230 * 120.00102 * 90.00101 * 12 9 8 14 14 C 1.38235 * 120.00326 * 179.97438 * 13 12 9 15 15 C 1.38234 * 119.99814 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00196 * 179.97438 * 15 14 13 17 17 O 1.42902 * 109.46735 * 65.00425 * 16 15 14 18 18 Si 1.86301 * 109.47185 * 185.00151 * 16 15 14 19 19 C 1.38240 * 120.00061 * 0.07178 * 15 14 13 20 20 C 1.38234 * 119.99689 * 359.90912 * 19 15 14 21 21 C 1.52998 * 109.47153 * 59.99655 * 6 5 4 22 22 C 1.52997 * 109.47575 * 300.00356 * 21 6 5 23 23 H 1.09007 * 109.47182 * 299.99536 * 1 2 3 24 24 H 1.09003 * 109.47595 * 59.99395 * 1 2 3 25 25 H 1.08996 * 109.47564 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47104 * 59.99163 * 4 2 1 27 27 H 1.09007 * 109.46769 * 300.00163 * 4 2 1 28 28 H 1.09003 * 109.47595 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47564 * 59.99446 * 5 4 2 30 30 H 0.96998 * 119.99800 * 324.99152 * 8 6 5 31 31 H 1.08000 * 120.00376 * 0.02562 * 13 12 9 32 32 H 1.08000 * 120.00616 * 179.72578 * 14 13 12 33 33 H 1.09000 * 109.46902 * 305.00419 * 16 15 14 34 34 H 0.96698 * 114.00410 * 59.99661 * 17 16 15 35 35 H 1.48501 * 110.00099 * 58.68332 * 18 16 15 36 36 H 1.48503 * 109.99900 * 180.02562 * 18 16 15 37 37 H 1.08005 * 120.00107 * 179.97438 * 19 15 14 38 38 H 1.07999 * 119.99751 * 180.02562 * 20 19 15 39 39 H 1.09002 * 109.47126 * 60.00278 * 21 6 5 40 40 H 1.09007 * 109.47092 * 179.97438 * 21 6 5 41 41 H 1.09002 * 109.46830 * 300.00104 * 22 21 6 42 42 H 1.08998 * 109.47480 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0794 -1.4435 -0.0005 7 1 3.7157 -2.4710 -0.0003 8 7 5.5444 -1.4446 -0.0005 9 16 6.3714 -2.7449 -0.6067 10 8 5.7895 -3.9002 -0.0185 11 8 7.7525 -2.4287 -0.4972 12 6 6.0161 -2.8316 -2.3304 13 6 6.8168 -2.1609 -3.2357 14 6 6.5384 -2.2293 -4.5880 15 6 5.4595 -2.9690 -5.0350 16 6 5.1555 -3.0431 -6.5092 17 8 6.2219 -3.7156 -7.1821 18 14 3.5673 -3.9816 -6.7693 19 6 4.6581 -3.6390 -4.1295 20 6 4.9369 -3.5708 -2.7772 21 6 3.5693 -0.7222 -1.2497 22 6 2.0394 -0.7215 -1.2493 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6766 -1.7490 1.2492 27 1 1.6767 -0.2076 2.1392 28 1 3.9334 -1.2362 2.1385 29 1 3.9337 0.3055 1.2486 30 1 6.0300 -0.6836 0.3544 31 1 7.6605 -1.5840 -2.8867 32 1 7.1613 -1.7016 -5.2951 33 1 5.0516 -2.0348 -6.9099 34 1 6.3717 -4.6205 -6.8757 35 1 2.4565 -3.3100 -6.0481 36 1 3.2567 -4.0624 -8.2193 37 1 3.8149 -4.2166 -4.4786 38 1 4.3111 -4.0946 -2.0698 39 1 3.9330 0.3054 -1.2499 40 1 3.9327 -1.2360 -2.1397 41 1 1.6756 -1.7491 -1.2491 42 1 1.6760 -0.2081 -2.1395 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:49 Heat of formation + Delta-G solvation = -94.827668 kcal Electronic energy + Delta-G solvation = -24942.532497 eV Core-core repulsion = 21401.160465 eV Total energy + Delta-G solvation = -3541.372032 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72808 -40.01330 -38.42146 -37.71912 -37.06279 -35.90190 -33.04469 -32.23455 -31.69161 -31.53326 -27.23967 -26.54761 -24.11092 -23.65969 -22.97963 -22.29207 -21.06609 -20.43083 -19.24609 -18.61435 -18.18919 -17.61971 -16.84750 -16.55481 -16.10363 -15.81574 -15.73825 -15.49245 -15.21175 -15.16372 -14.78957 -14.56136 -14.42566 -14.22245 -14.02947 -13.82819 -13.35618 -13.28933 -13.18042 -13.10842 -12.99440 -12.67225 -12.62813 -12.43737 -12.08461 -12.03542 -11.93674 -11.78968 -11.50434 -11.27766 -11.13613 -10.61564 -10.48344 -10.29205 -10.14506 -5.03784 -0.76436 -0.39168 0.18060 1.22374 1.58973 1.85859 1.92715 2.31390 2.68144 3.18418 3.39443 3.51121 3.64714 3.73879 3.75095 3.81905 3.86487 4.08929 4.16623 4.18067 4.28027 4.34015 4.37619 4.47180 4.50910 4.57954 4.58445 4.63451 4.80690 4.82882 4.90757 4.93457 4.97190 4.98507 5.08569 5.14702 5.21211 5.23849 5.24496 5.34403 5.40427 5.44968 5.59857 5.68521 6.01622 6.66491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.121 4.121 6 C 0.145 3.855 7 H 0.093 0.907 8 N -1.103 6.103 9 S 2.707 3.293 10 O -0.982 6.982 11 O -0.989 6.989 12 C -0.675 4.675 13 C -0.025 4.025 14 C -0.122 4.122 15 C -0.063 4.063 16 C -0.082 4.082 17 O -0.552 6.552 18 Si 0.771 3.229 19 C -0.136 4.136 20 C -0.021 4.021 21 C -0.139 4.139 22 C -0.113 4.113 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.428 0.572 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.397 0.603 35 H -0.276 1.276 36 H -0.299 1.299 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 0.921 -0.533 4.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.161 4.161 6 C 0.039 3.961 7 H 0.111 0.889 8 N -0.864 5.864 9 S 2.799 3.201 10 O -0.972 6.972 11 O -0.979 6.979 12 C -0.764 4.764 13 C -0.044 4.044 14 C -0.140 4.140 15 C -0.064 4.064 16 C -0.191 4.191 17 O -0.360 6.360 18 Si 0.676 3.324 19 C -0.154 4.154 20 C -0.040 4.040 21 C -0.179 4.179 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.247 0.753 35 H -0.202 1.202 36 H -0.227 1.227 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.682 0.778 -0.726 4.801 hybrid contribution 0.404 1.227 -0.545 1.402 sum -4.278 2.005 -1.272 4.893 Atomic orbital electron populations 1.21835 0.95121 1.01981 1.01749 1.21160 0.95564 0.99688 0.94721 0.91160 1.21590 0.94139 1.01337 0.98077 1.21796 0.96279 1.01426 0.96560 1.21035 0.77197 1.01297 0.96598 0.88945 1.55373 1.15829 1.37756 1.77423 1.01219 0.72088 0.72979 0.73849 1.93569 1.78961 1.48755 1.75879 1.93569 1.32768 1.84574 1.87037 1.30787 1.07926 1.12581 1.25079 1.21099 0.96296 0.93840 0.93204 1.21312 0.97720 0.99487 0.95522 1.20837 0.94492 0.94561 0.96498 1.25348 1.02019 1.02975 0.88808 1.86502 1.53895 1.32872 1.62746 0.93699 0.72813 0.87889 0.78024 1.21370 1.00569 1.00531 0.92933 1.21131 0.93131 0.92628 0.97081 1.22123 0.96443 1.01942 0.97342 1.21575 0.94203 1.01390 0.97968 0.92617 0.92814 0.92533 0.91457 0.91018 0.91003 0.90389 0.73518 0.83576 0.84124 0.86746 0.75302 1.20242 1.22657 0.82345 0.82535 0.90764 0.91453 0.91245 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 9.19 71.98 0.66 1.27 16 2 C -0.09 0.43 2.72 -10.79 -0.03 0.40 16 3 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 4 C -0.11 0.54 5.20 30.59 0.16 0.70 16 5 C -0.12 0.57 5.45 30.59 0.17 0.74 16 6 C 0.15 -0.54 2.79 44.99 0.13 -0.41 16 7 H 0.09 -0.31 7.50 -2.39 -0.02 -0.32 16 8 N -1.10 3.01 5.47 -169.38 -0.93 2.09 16 9 S 2.71 8.33 5.72 -56.49 -0.32 8.01 16 10 O -0.98 -8.23 16.62 -128.00 -2.13 -10.36 16 11 O -0.99 -9.23 17.28 -128.00 -2.21 -11.44 16 12 C -0.68 -0.36 5.06 22.27 0.11 -0.24 16 13 C -0.03 -0.01 9.52 22.27 0.21 0.20 16 14 C -0.12 0.08 9.69 22.27 0.22 0.30 16 15 C -0.06 0.15 5.35 -19.86 -0.11 0.04 16 16 C -0.08 0.26 2.80 71.24 0.20 0.46 16 17 O -0.55 0.96 12.83 -148.98 -1.91 -0.95 16 18 Si 0.77 -3.60 29.80 68.60 2.04 -1.56 16 19 C -0.14 0.53 8.67 22.27 0.19 0.73 16 20 C -0.02 0.04 8.58 22.27 0.19 0.23 16 21 C -0.14 0.65 5.53 30.59 0.17 0.82 16 22 C -0.11 0.54 5.20 30.59 0.16 0.70 16 23 H 0.05 -0.21 8.14 -2.38 -0.02 -0.23 16 24 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.43 -2.60 8.84 -96.75 -0.85 -3.45 16 31 H 0.15 -0.16 7.62 -2.91 -0.02 -0.19 16 32 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 33 H 0.12 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.40 -3.76 8.70 -74.06 -0.64 -4.41 16 35 H -0.28 0.26 7.11 99.48 0.71 0.96 16 36 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 37 H 0.16 -1.44 4.91 -2.91 -0.01 -1.45 16 38 H 0.16 -0.75 7.62 -2.91 -0.02 -0.77 16 39 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.07 -0.29 6.17 -2.38 -0.01 -0.30 16 41 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -19.26 344.64 -3.46 -22.72 By element: Atomic # 1 Polarization: -14.00 SS G_CDS: -0.43 Total: -14.43 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 2.43 Total: 5.92 kcal Atomic # 7 Polarization: 3.01 SS G_CDS: -0.93 Total: 2.09 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -6.25 Total: -22.75 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.04 Total: -1.56 kcal Atomic # 16 Polarization: 8.33 SS G_CDS: -0.32 Total: 8.01 kcal Total: -19.26 -3.46 -22.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.105 kcal (2) G-P(sol) polarization free energy of solvation -19.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds