Wall clock time and date at job start Mon Mar 8 2021 13:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 8 8 N 1.46505 * 109.46958 * 180.02562 * 6 5 4 9 9 S 1.65596 * 119.99655 * 95.00151 * 8 6 5 10 10 O 1.42106 * 106.39870 * 178.53817 * 9 8 6 11 11 O 1.42101 * 106.40521 * 311.45687 * 9 8 6 12 12 C 1.76204 * 107.21822 * 65.00311 * 9 8 6 13 13 C 1.33391 * 125.20067 * 179.71683 * 12 9 8 14 14 C 1.50702 * 122.53957 * 0.02562 * 13 12 9 15 15 O 1.42894 * 109.47008 * 74.99909 * 14 13 12 16 16 Si 1.86304 * 109.46846 * 194.99793 * 14 13 12 17 17 C 1.38425 * 114.91761 * 179.85602 * 13 12 9 18 18 C 1.33386 * 114.92024 * 0.43374 * 17 13 12 19 19 S 1.75882 * 125.20206 * 0.02562 * 12 9 8 20 20 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 21 21 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 22 22 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 24 24 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 26 26 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 27 27 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 29 29 H 0.97003 * 120.00234 * 275.00328 * 8 6 5 30 30 H 1.08999 * 109.46830 * 314.99981 * 14 13 12 31 31 H 0.96701 * 114.00227 * 59.99859 * 15 14 13 32 32 H 1.48495 * 109.99808 * 180.02562 * 16 14 13 33 33 H 1.48502 * 109.99993 * 301.32196 * 16 14 13 34 34 H 1.08000 * 122.53983 * 180.19854 * 17 13 12 35 35 H 1.07997 * 125.20333 * 179.74914 * 18 17 13 36 36 H 1.09004 * 109.47368 * 179.97438 * 20 6 5 37 37 H 1.09001 * 109.47372 * 59.99964 * 20 6 5 38 38 H 1.09002 * 109.47153 * 59.99783 * 21 2 1 39 39 H 1.09001 * 109.46832 * 299.99974 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 1 3.7175 -2.4693 0.0005 8 7 5.5455 -1.4416 0.0012 9 16 6.3731 -2.7415 0.6074 10 8 7.7540 -2.4536 0.4354 11 8 5.7916 -3.0339 1.8706 12 6 6.0184 -4.1177 -0.4343 13 6 6.5061 -5.3489 -0.2745 14 6 7.4428 -5.7101 0.8494 15 8 6.7076 -5.8019 2.0713 16 14 8.2475 -7.3502 0.4842 17 6 6.0838 -6.2704 -1.2171 18 6 5.2603 -5.7854 -2.1476 19 16 4.9731 -4.0762 -1.8482 20 6 3.5705 -0.7205 -1.2487 21 6 2.0400 -0.7213 -1.2491 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6766 -1.7488 1.2495 26 1 1.6766 -0.2072 2.1393 27 1 3.9333 -1.2346 2.1395 28 1 3.9329 0.3073 1.2498 29 1 6.0307 -0.6802 -0.3535 30 1 8.2102 -4.9419 0.9439 31 1 6.0062 -6.4675 2.0593 32 1 9.1733 -7.7181 1.5854 33 1 7.2099 -8.4000 0.3214 34 1 6.4002 -7.3029 -1.2026 35 1 4.8352 -6.3550 -2.9608 36 1 3.9345 -1.2339 -2.1387 37 1 3.9335 0.3073 -1.2487 38 1 1.6767 -0.2076 -2.1392 39 1 1.6767 -1.7490 -1.2490 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:55 Heat of formation + Delta-G solvation = -80.771052 kcal Electronic energy + Delta-G solvation = -23826.056751 eV Core-core repulsion = 20374.446507 eV Total energy + Delta-G solvation = -3451.610245 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.20471 -40.05532 -38.04925 -37.19048 -36.73622 -36.02121 -31.85836 -31.66145 -31.47598 -28.05427 -26.66373 -24.40893 -23.77083 -22.43960 -21.79534 -20.84265 -19.87412 -19.66245 -18.58744 -18.02662 -17.50277 -16.71390 -16.39280 -16.02421 -15.92804 -15.67140 -15.34884 -15.32015 -15.21981 -14.62371 -14.30338 -14.12764 -14.08416 -13.60624 -13.31631 -13.28824 -13.03461 -12.94697 -12.88186 -12.78308 -12.64217 -12.57649 -12.25092 -12.17834 -12.04387 -11.65519 -11.58983 -11.44212 -11.18952 -10.73457 -10.55853 -10.45247 -9.72379 -5.03904 -0.69943 -0.64238 0.18036 0.54757 1.13253 1.17903 1.49569 1.88544 1.94111 2.66319 3.24546 3.40733 3.50603 3.57897 3.64953 3.78767 3.88651 3.93236 4.02250 4.07364 4.16528 4.28922 4.34618 4.39927 4.45323 4.53505 4.60219 4.68457 4.78324 4.79293 4.85497 4.95062 4.98372 5.00084 5.09073 5.16379 5.25324 5.28526 5.35260 5.47711 5.84543 6.33101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.139 4.139 6 C 0.150 3.850 7 H 0.084 0.916 8 N -1.116 6.116 9 S 2.713 3.287 10 O -0.950 6.950 11 O -0.925 6.925 12 C -0.766 4.766 13 C 0.007 3.993 14 C -0.106 4.106 15 O -0.508 6.508 16 Si 0.710 3.290 17 C -0.163 4.163 18 C -0.164 4.164 19 S 0.206 5.794 20 C -0.127 4.127 21 C -0.113 4.113 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.422 0.578 30 H 0.127 0.873 31 H 0.378 0.622 32 H -0.248 1.248 33 H -0.253 1.253 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -0.526 -5.940 6.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.178 4.178 6 C 0.043 3.957 7 H 0.102 0.898 8 N -0.876 5.876 9 S 2.797 3.203 10 O -0.940 6.940 11 O -0.914 6.914 12 C -0.966 4.966 13 C -0.011 4.011 14 C -0.217 4.217 15 O -0.314 6.314 16 Si 0.609 3.391 17 C -0.193 4.193 18 C -0.301 4.301 19 S 0.472 5.528 20 C -0.166 4.166 21 C -0.152 4.152 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.257 0.743 30 H 0.145 0.855 31 H 0.226 0.774 32 H -0.172 1.172 33 H -0.178 1.178 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.093 0.053 -5.471 6.285 hybrid contribution -0.369 -1.175 0.361 1.283 sum -3.462 -1.122 -5.110 6.274 Atomic orbital electron populations 1.21834 0.94984 1.01963 1.01879 1.21201 0.95715 0.99831 0.94689 0.90930 1.21593 0.94491 1.01156 0.97985 1.22086 0.96089 1.01671 0.97944 1.20953 0.77512 1.00617 0.96610 0.89842 1.55733 1.15848 1.34457 1.81586 1.01691 0.73155 0.71961 0.73485 1.93625 1.30508 1.83600 1.86272 1.93658 1.78144 1.83841 1.35795 1.35782 1.18953 1.21341 1.20498 1.18971 0.95046 0.90967 0.96073 1.25351 0.96764 1.15358 0.84217 1.86788 1.50798 1.61824 1.31962 0.94595 0.82841 0.73200 0.88442 1.20333 1.01324 1.01667 0.95988 1.26150 1.02012 0.98677 1.03291 1.84103 1.42873 1.06761 1.19033 1.21895 0.96499 1.01497 0.96667 1.21599 0.94062 1.01297 0.98213 0.92616 0.92542 0.92606 0.91614 0.91236 0.90126 0.90987 0.74301 0.85520 0.77390 1.17196 1.17767 0.82634 0.80389 0.91049 0.90686 0.91163 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 9.19 37.15 0.34 0.59 16 2 C -0.10 0.16 2.72 -90.62 -0.25 -0.08 16 3 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 4 C -0.11 0.11 5.20 -26.73 -0.14 -0.03 16 5 C -0.14 0.02 5.53 -26.73 -0.15 -0.12 16 6 C 0.15 -0.13 2.06 -67.93 -0.14 -0.27 16 7 H 0.08 -0.07 6.89 -51.93 -0.36 -0.43 16 8 N -1.12 0.30 5.29 -4.89 -0.03 0.28 16 9 S 2.71 8.52 4.98 -107.50 -0.54 7.98 16 10 O -0.95 -5.36 17.48 -57.17 -1.00 -6.36 16 11 O -0.92 -5.47 16.72 -59.41 -0.99 -6.46 16 12 C -0.77 -1.30 6.33 29.04 0.18 -1.12 16 13 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 14 C -0.11 -0.19 2.33 36.01 0.08 -0.10 16 15 O -0.51 -1.59 12.32 -35.88 -0.44 -2.03 16 16 Si 0.71 -0.48 30.47 -169.99 -5.18 -5.66 16 17 C -0.16 0.14 8.74 -41.21 -0.36 -0.22 16 18 C -0.16 0.30 11.23 29.04 0.33 0.63 16 19 S 0.21 -0.22 21.58 -107.50 -2.32 -2.54 16 20 C -0.13 0.31 5.45 -26.71 -0.15 0.17 16 21 C -0.11 0.27 5.21 -26.71 -0.14 0.13 16 22 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 26 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 27 H 0.08 0.13 7.64 -51.93 -0.40 -0.27 16 28 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.42 -0.97 8.84 -34.47 -0.30 -1.28 16 30 H 0.13 0.30 7.23 -51.93 -0.38 -0.08 16 31 H 0.38 -0.19 8.70 45.56 0.40 0.20 16 32 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 33 H -0.25 0.02 6.80 56.52 0.38 0.41 16 34 H 0.16 -0.42 5.54 -52.49 -0.29 -0.71 16 35 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 36 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 37 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 38 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 LS Contribution 334.30 15.07 5.04 5.04 Total: 0.00 -8.31 334.30 -12.00 -20.31 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -5.62 Total: -9.57 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.93 Total: -0.98 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.03 Total: 0.28 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -2.43 Total: -14.86 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.18 Total: -5.66 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -2.86 Total: 5.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -8.31 -12.00 -20.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -8.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds