Wall clock time and date at job start Mon Mar 8 2021 13:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 8 8 N 1.46505 * 109.46958 * 180.02562 * 6 5 4 9 9 S 1.65596 * 119.99655 * 95.00151 * 8 6 5 10 10 O 1.42106 * 106.39870 * 178.53817 * 9 8 6 11 11 O 1.42101 * 106.40521 * 311.45687 * 9 8 6 12 12 C 1.76204 * 107.21822 * 65.00311 * 9 8 6 13 13 C 1.33391 * 125.20067 * 179.71683 * 12 9 8 14 14 C 1.50702 * 122.53957 * 0.02562 * 13 12 9 15 15 O 1.42894 * 109.47008 * 74.99909 * 14 13 12 16 16 Si 1.86304 * 109.46846 * 194.99793 * 14 13 12 17 17 C 1.38425 * 114.91761 * 179.85602 * 13 12 9 18 18 C 1.33386 * 114.92024 * 0.43374 * 17 13 12 19 19 S 1.75882 * 125.20206 * 0.02562 * 12 9 8 20 20 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 21 21 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 22 22 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 24 24 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 26 26 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 27 27 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 28 28 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 29 29 H 0.97003 * 120.00234 * 275.00328 * 8 6 5 30 30 H 1.08999 * 109.46830 * 314.99981 * 14 13 12 31 31 H 0.96701 * 114.00227 * 59.99859 * 15 14 13 32 32 H 1.48495 * 109.99808 * 180.02562 * 16 14 13 33 33 H 1.48502 * 109.99993 * 301.32196 * 16 14 13 34 34 H 1.08000 * 122.53983 * 180.19854 * 17 13 12 35 35 H 1.07997 * 125.20333 * 179.74914 * 18 17 13 36 36 H 1.09004 * 109.47368 * 179.97438 * 20 6 5 37 37 H 1.09001 * 109.47372 * 59.99964 * 20 6 5 38 38 H 1.09002 * 109.47153 * 59.99783 * 21 2 1 39 39 H 1.09001 * 109.46832 * 299.99974 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 1 3.7175 -2.4693 0.0005 8 7 5.5455 -1.4416 0.0012 9 16 6.3731 -2.7415 0.6074 10 8 7.7540 -2.4536 0.4354 11 8 5.7916 -3.0339 1.8706 12 6 6.0184 -4.1177 -0.4343 13 6 6.5061 -5.3489 -0.2745 14 6 7.4428 -5.7101 0.8494 15 8 6.7076 -5.8019 2.0713 16 14 8.2475 -7.3502 0.4842 17 6 6.0838 -6.2704 -1.2171 18 6 5.2603 -5.7854 -2.1476 19 16 4.9731 -4.0762 -1.8482 20 6 3.5705 -0.7205 -1.2487 21 6 2.0400 -0.7213 -1.2491 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.6766 -1.7488 1.2495 26 1 1.6766 -0.2072 2.1393 27 1 3.9333 -1.2346 2.1395 28 1 3.9329 0.3073 1.2498 29 1 6.0307 -0.6802 -0.3535 30 1 8.2102 -4.9419 0.9439 31 1 6.0062 -6.4675 2.0593 32 1 9.1733 -7.7181 1.5854 33 1 7.2099 -8.4000 0.3214 34 1 6.4002 -7.3029 -1.2026 35 1 4.8352 -6.3550 -2.9608 36 1 3.9345 -1.2339 -2.1387 37 1 3.9335 0.3073 -1.2487 38 1 1.6767 -0.2076 -2.1392 39 1 1.6767 -1.7490 -1.2490 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:53 Heat of formation + Delta-G solvation = -81.975301 kcal Electronic energy + Delta-G solvation = -23826.108972 eV Core-core repulsion = 20374.446507 eV Total energy + Delta-G solvation = -3451.662465 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.16953 -40.02127 -38.37453 -37.29579 -37.06152 -35.99938 -31.74734 -31.63083 -31.42794 -28.12640 -26.58029 -24.37696 -23.66810 -22.37566 -21.84587 -20.76948 -19.96425 -19.70255 -18.73147 -18.09737 -17.57736 -16.78981 -16.53213 -16.12808 -15.94690 -15.65062 -15.30750 -15.22565 -15.14522 -14.54714 -14.30033 -14.17226 -14.05580 -13.64894 -13.38774 -13.30387 -13.19084 -13.16041 -13.02198 -12.80269 -12.69663 -12.53919 -12.36190 -12.07666 -11.94273 -11.63099 -11.50226 -11.33093 -11.13043 -10.81423 -10.53492 -10.41593 -9.63738 -4.99322 -0.83483 -0.68076 0.20290 0.65132 1.13097 1.24362 1.51946 1.83565 1.89273 2.46856 3.18430 3.42513 3.45899 3.58895 3.72429 3.82103 3.98156 4.03291 4.11588 4.17258 4.21752 4.28332 4.43442 4.47838 4.56867 4.63640 4.69369 4.80514 4.87674 4.90580 4.99151 5.05736 5.07543 5.16074 5.20014 5.23223 5.33059 5.40650 5.45172 5.59499 5.91912 6.34845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.141 4.141 6 C 0.147 3.853 7 H 0.083 0.917 8 N -1.105 6.105 9 S 2.720 3.280 10 O -0.986 6.986 11 O -0.964 6.964 12 C -0.797 4.797 13 C 0.001 3.999 14 C -0.135 4.135 15 O -0.535 6.535 16 Si 0.802 3.198 17 C -0.175 4.175 18 C -0.150 4.150 19 S 0.235 5.765 20 C -0.123 4.123 21 C -0.112 4.112 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.431 0.569 30 H 0.108 0.892 31 H 0.390 0.610 32 H -0.295 1.295 33 H -0.248 1.248 34 H 0.178 0.822 35 H 0.214 0.786 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -1.308 -8.374 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.180 4.180 6 C 0.041 3.959 7 H 0.101 0.899 8 N -0.868 5.868 9 S 2.808 3.192 10 O -0.976 6.976 11 O -0.954 6.954 12 C -0.999 4.999 13 C -0.017 4.017 14 C -0.243 4.243 15 O -0.343 6.343 16 Si 0.702 3.298 17 C -0.204 4.204 18 C -0.287 4.287 19 S 0.501 5.499 20 C -0.162 4.162 21 C -0.151 4.151 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.240 0.760 32 H -0.223 1.223 33 H -0.173 1.173 34 H 0.195 0.805 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.230 -0.671 -7.900 8.986 hybrid contribution -0.063 -0.894 1.125 1.439 sum -4.293 -1.565 -6.775 8.172 Atomic orbital electron populations 1.21829 0.94928 1.01959 1.01909 1.21181 0.95712 0.99805 0.94512 0.90860 1.21584 0.93780 1.01188 0.98573 1.22088 0.96779 1.01734 0.97422 1.21084 0.76749 1.00879 0.97222 0.89881 1.55444 1.16140 1.33879 1.81326 1.00959 0.72396 0.72562 0.73322 1.93567 1.32795 1.84441 1.86836 1.93606 1.78505 1.84679 1.38608 1.35468 1.21339 1.20882 1.22249 1.19133 0.94878 0.91415 0.96274 1.25826 0.96991 1.17322 0.84182 1.86740 1.51625 1.62896 1.33058 0.93579 0.79908 0.70161 0.86199 1.20481 1.01913 1.02290 0.95726 1.26644 1.00572 0.98200 1.03328 1.83932 1.41395 1.07614 1.16938 1.21900 0.96522 1.01814 0.95934 1.21610 0.93862 1.01501 0.98090 0.92637 0.92963 0.92134 0.91840 0.91561 0.92529 0.90470 0.73121 0.87407 0.75998 1.22273 1.17283 0.80537 0.76965 0.89812 0.89957 0.90149 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 9.19 71.98 0.66 1.21 16 2 C -0.09 0.35 2.72 -10.79 -0.03 0.32 16 3 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 4 C -0.11 0.12 5.20 30.60 0.16 0.28 16 5 C -0.14 -0.14 5.53 30.59 0.17 0.03 16 6 C 0.15 -0.18 2.06 44.99 0.09 -0.08 16 7 H 0.08 -0.09 6.89 -2.39 -0.02 -0.11 16 8 N -1.10 -0.74 5.29 -169.39 -0.90 -1.64 16 9 S 2.72 23.40 4.98 -56.49 -0.28 23.12 16 10 O -0.99 -13.99 17.48 -128.00 -2.24 -16.23 16 11 O -0.96 -14.52 16.72 -125.86 -2.10 -16.62 16 12 C -0.80 -3.37 6.33 66.72 0.42 -2.95 16 13 C 0.00 0.00 5.13 -20.92 -0.11 -0.10 16 14 C -0.14 -0.71 2.33 71.24 0.17 -0.54 16 15 O -0.53 -4.61 12.32 -148.36 -1.83 -6.43 16 16 Si 0.80 -1.04 30.47 68.60 2.09 1.05 16 17 C -0.18 0.57 8.74 21.22 0.19 0.75 16 18 C -0.15 0.92 11.23 66.72 0.75 1.67 16 19 S 0.23 -0.77 21.58 -56.49 -1.22 -1.99 16 20 C -0.12 0.71 5.45 30.61 0.17 0.88 16 21 C -0.11 0.66 5.21 30.61 0.16 0.82 16 22 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.06 0.34 7.64 -2.39 -0.02 0.32 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.43 -1.57 8.84 -96.74 -0.85 -2.42 16 30 H 0.11 0.86 7.23 -2.39 -0.02 0.84 16 31 H 0.39 0.28 8.70 -74.06 -0.64 -0.37 16 32 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 33 H -0.25 0.52 6.80 99.48 0.68 1.20 16 34 H 0.18 -1.40 5.54 -2.91 -0.02 -1.42 16 35 H 0.21 -2.85 8.06 -2.91 -0.02 -2.87 16 36 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -21.79 334.30 -4.10 -25.89 By element: Atomic # 1 Polarization: -9.00 SS G_CDS: -0.42 Total: -9.43 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 2.80 Total: 2.29 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -0.90 Total: -1.64 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -6.17 Total: -39.28 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.09 Total: 1.05 kcal Atomic # 16 Polarization: 22.62 SS G_CDS: -1.50 Total: 21.12 kcal Total: -21.79 -4.10 -25.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.088 kcal (2) G-P(sol) polarization free energy of solvation -21.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds