Wall clock time and date at job start Mon Mar 8 2021 13:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46993 * 119.99926 * 2 1 3 5 5 C 1.53007 * 109.47176 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46937 * 299.99971 * 5 4 2 7 7 H 1.09005 * 109.46614 * 300.00174 * 6 5 4 8 8 N 1.46498 * 109.47343 * 179.97438 * 6 5 4 9 9 S 1.65598 * 120.00150 * 141.19920 * 8 6 5 10 10 O 1.42096 * 106.40122 * 177.68138 * 9 8 6 11 11 O 1.42098 * 106.40085 * 310.60056 * 9 8 6 12 12 C 1.76202 * 107.21689 * 64.14080 * 9 8 6 13 13 C 1.33387 * 122.53904 * 68.29073 * 12 9 8 14 14 C 1.50703 * 125.20190 * 0.02823 * 13 12 9 15 15 O 1.42896 * 109.47715 * 65.92043 * 14 13 12 16 16 Si 1.86304 * 109.46926 * 185.92234 * 14 13 12 17 17 S 1.75885 * 109.59405 * 179.97438 * 13 12 9 18 18 C 1.75880 * 90.97073 * 0.02562 * 17 13 12 19 19 C 1.33399 * 109.59553 * 359.72582 * 18 17 13 20 20 C 1.52999 * 109.47316 * 59.99367 * 6 5 4 21 21 C 1.52993 * 109.47678 * 300.00385 * 20 6 5 22 22 H 1.08996 * 109.47107 * 300.00035 * 1 2 3 23 23 H 1.09001 * 109.46969 * 60.00630 * 1 2 3 24 24 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46769 * 299.99801 * 4 2 1 26 26 H 1.08997 * 109.47578 * 60.00065 * 4 2 1 27 27 H 1.08997 * 109.47029 * 59.99466 * 5 4 2 28 28 H 1.08995 * 109.46957 * 179.97438 * 5 4 2 29 29 H 0.97006 * 119.99633 * 321.20286 * 8 6 5 30 30 H 1.08999 * 109.46737 * 305.91870 * 14 13 12 31 31 H 0.96701 * 114.00151 * 52.47031 * 15 14 13 32 32 H 1.48493 * 109.99804 * 183.98879 * 16 14 13 33 33 H 1.48505 * 109.99870 * 305.30591 * 16 14 13 34 34 H 1.07998 * 125.20619 * 179.97438 * 18 17 13 35 35 H 1.07993 * 122.54322 * 180.24388 * 19 18 17 36 36 H 1.09005 * 109.46620 * 60.00811 * 20 6 5 37 37 H 1.09003 * 109.47423 * 179.97438 * 20 6 5 38 38 H 1.09000 * 109.47217 * 300.00343 * 21 20 6 39 39 H 1.08998 * 109.47683 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7207 1.2496 6 6 4.0806 -1.4416 0.0004 7 1 3.7175 -2.4694 0.0003 8 7 5.5455 -1.4406 0.0004 9 16 6.3744 -2.7771 -0.5182 10 8 7.7544 -2.4452 -0.4491 11 8 5.8076 -3.8893 0.1607 12 6 5.9996 -2.9931 -2.2263 13 6 6.4153 -2.1417 -3.1653 14 6 7.2422 -0.9071 -2.9139 15 8 8.5350 -1.2881 -2.4391 16 14 7.4215 0.0537 -4.5000 17 16 5.8521 -2.6813 -4.7417 18 6 5.0597 -4.0734 -4.0154 19 6 5.2560 -4.0620 -2.6960 20 6 3.5705 -0.7205 -1.2488 21 6 2.0405 -0.7210 -1.2492 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6766 -0.2073 2.1392 26 1 1.6767 -1.7489 1.2494 27 1 3.9330 0.3070 1.2498 28 1 3.9333 -1.2341 2.1398 29 1 6.0300 -0.6570 0.3042 30 1 6.7491 -0.2857 -2.1664 31 1 8.9852 -1.9347 -2.9998 32 1 8.3137 1.2216 -4.2882 33 1 7.9747 -0.8218 -5.5644 34 1 4.5030 -4.8249 -4.5555 35 1 4.8617 -4.8268 -2.0434 36 1 3.9336 0.3073 -1.2487 37 1 3.9345 -1.2338 -2.1389 38 1 1.6775 -1.7488 -1.2493 39 1 1.6772 -0.2069 -2.1390 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:01 Heat of formation + Delta-G solvation = -80.440562 kcal Electronic energy + Delta-G solvation = -24244.827874 eV Core-core repulsion = 20793.231960 eV Total energy + Delta-G solvation = -3451.595913 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.15258 -39.60336 -38.17768 -37.38162 -36.67588 -35.94297 -31.95888 -31.75630 -31.56380 -27.48207 -26.61653 -24.45121 -23.74947 -22.37785 -21.77980 -21.05011 -19.99830 -19.24933 -18.55822 -18.08946 -17.30856 -16.95384 -16.38392 -15.97811 -15.73934 -15.53544 -15.32969 -15.27936 -15.06595 -14.59837 -14.21706 -14.09807 -13.97399 -13.88172 -13.29805 -13.24029 -13.01256 -12.91226 -12.87072 -12.82508 -12.70853 -12.61073 -12.19149 -12.14111 -11.99221 -11.63058 -11.55451 -11.34931 -11.23207 -10.81119 -10.45226 -10.23068 -9.88473 -5.19595 -0.69207 -0.48382 0.30522 0.55707 1.00181 1.09831 1.41402 1.79782 2.08520 2.79866 3.04870 3.39228 3.49355 3.57464 3.64710 3.74974 3.98350 4.02717 4.07828 4.13510 4.21405 4.28282 4.36808 4.40859 4.46137 4.52737 4.66224 4.71116 4.79171 4.86066 4.87071 4.97810 5.02964 5.08272 5.09914 5.11607 5.23999 5.29556 5.33479 5.47869 5.93924 6.29726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.123 4.123 6 C 0.149 3.851 7 H 0.092 0.908 8 N -1.112 6.112 9 S 2.698 3.302 10 O -0.927 6.927 11 O -0.957 6.957 12 C -0.658 4.658 13 C -0.102 4.102 14 C -0.066 4.066 15 O -0.486 6.486 16 Si 0.653 3.347 17 S 0.156 5.844 18 C -0.210 4.210 19 C -0.076 4.076 20 C -0.140 4.140 21 C -0.113 4.113 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.419 0.581 30 H 0.130 0.870 31 H 0.378 0.622 32 H -0.229 1.229 33 H -0.236 1.236 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.005 2.974 -3.261 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.162 4.162 6 C 0.043 3.957 7 H 0.110 0.890 8 N -0.872 5.872 9 S 2.784 3.216 10 O -0.917 6.917 11 O -0.947 6.947 12 C -0.758 4.758 13 C -0.223 4.223 14 C -0.178 4.178 15 O -0.292 6.292 16 Si 0.550 3.450 17 S 0.420 5.580 18 C -0.346 4.346 19 C -0.104 4.104 20 C -0.179 4.179 21 C -0.151 4.151 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.254 0.746 30 H 0.148 0.852 31 H 0.226 0.774 32 H -0.152 1.152 33 H -0.160 1.160 34 H 0.192 0.808 35 H 0.175 0.825 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.014 3.487 -4.504 6.969 hybrid contribution 0.418 -1.107 0.951 1.518 sum -3.596 2.380 -3.554 5.588 Atomic orbital electron populations 1.21837 0.95033 1.01973 1.01836 1.21187 0.95669 0.99761 0.94707 0.90986 1.21601 0.94343 1.01302 0.98037 1.21808 0.96153 1.01128 0.97122 1.20904 0.77768 1.01113 0.95952 0.88977 1.55684 1.15680 1.34827 1.80980 1.02003 0.73417 0.73088 0.73085 1.93715 1.29081 1.83014 1.85859 1.93591 1.79508 1.50609 1.70993 1.30009 1.14470 1.04625 1.26710 1.25005 1.00647 1.00070 0.96586 1.24890 0.85377 0.95491 1.12085 1.86898 1.26904 1.63903 1.51471 0.95443 0.92219 0.82489 0.74869 1.84480 1.46539 1.19445 1.07537 1.25929 1.07520 1.03087 0.98026 1.19773 0.97785 0.97490 0.95371 1.22114 0.96395 1.01766 0.97642 1.21567 0.94347 1.01170 0.98015 0.92605 0.92612 0.92608 0.91304 0.91489 0.91075 0.90900 0.74593 0.85220 0.77445 1.15153 1.16012 0.80768 0.82487 0.90842 0.91408 0.91648 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 9.19 37.16 0.34 0.65 16 2 C -0.09 0.22 2.72 -90.62 -0.25 -0.03 16 3 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 4 C -0.11 0.23 5.20 -26.73 -0.14 0.10 16 5 C -0.12 0.24 5.48 -26.73 -0.15 0.09 16 6 C 0.15 -0.23 2.79 -67.93 -0.19 -0.42 16 7 H 0.09 -0.07 7.52 -51.93 -0.39 -0.46 16 8 N -1.11 1.12 5.38 -4.89 -0.03 1.10 16 9 S 2.70 5.69 5.35 -107.50 -0.58 5.11 16 10 O -0.93 -4.44 14.98 -66.54 -1.00 -5.43 16 11 O -0.96 -4.84 16.73 -57.17 -0.96 -5.79 16 12 C -0.66 -0.45 5.03 -41.21 -0.21 -0.66 16 13 C -0.10 0.04 5.40 -36.00 -0.19 -0.16 16 14 C -0.07 0.04 2.22 36.01 0.08 0.12 16 15 O -0.49 -0.79 10.19 -58.08 -0.59 -1.39 16 16 Si 0.65 -1.02 31.10 -169.99 -5.29 -6.30 16 17 S 0.16 -0.20 20.60 -107.50 -2.21 -2.42 16 18 C -0.21 0.23 11.23 29.04 0.33 0.56 16 19 C -0.08 -0.02 9.70 -41.20 -0.40 -0.41 16 20 C -0.14 0.37 5.53 -26.74 -0.15 0.23 16 21 C -0.11 0.29 5.21 -26.73 -0.14 0.15 16 22 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.05 -0.11 8.14 -51.93 -0.42 -0.54 16 24 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 26 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.42 -1.13 8.88 -34.47 -0.31 -1.43 16 30 H 0.13 -0.30 7.90 -51.93 -0.41 -0.71 16 31 H 0.38 -0.32 8.78 45.56 0.40 0.09 16 32 H -0.23 -0.26 7.11 56.52 0.40 0.14 16 33 H -0.24 -0.02 7.11 56.52 0.40 0.39 16 34 H 0.17 -0.56 8.06 -52.49 -0.42 -0.99 16 35 H 0.16 -0.04 7.74 -52.49 -0.41 -0.44 16 36 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.07 -0.18 7.11 -51.93 -0.37 -0.55 16 38 H 0.06 -0.14 8.14 -51.93 -0.42 -0.57 16 39 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 LS Contribution 333.77 15.07 5.03 5.03 Total: 0.00 -7.69 333.77 -12.43 -20.12 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -5.75 Total: -10.25 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.06 Total: 0.22 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -0.03 Total: 1.10 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -2.55 Total: -12.61 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.29 Total: -6.30 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -2.79 Total: 2.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -7.69 -12.43 -20.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.319 kcal (2) G-P(sol) polarization free energy of solvation -7.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds