Wall clock time and date at job start Mon Mar 8 2021 13:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46993 * 119.99926 * 2 1 3 5 5 C 1.53007 * 109.47176 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46937 * 299.99971 * 5 4 2 7 7 H 1.09005 * 109.46614 * 300.00174 * 6 5 4 8 8 N 1.46498 * 109.47343 * 179.97438 * 6 5 4 9 9 S 1.65598 * 120.00150 * 141.19920 * 8 6 5 10 10 O 1.42096 * 106.40122 * 177.68138 * 9 8 6 11 11 O 1.42098 * 106.40085 * 310.60056 * 9 8 6 12 12 C 1.76202 * 107.21689 * 64.14080 * 9 8 6 13 13 C 1.33387 * 122.53904 * 68.29073 * 12 9 8 14 14 C 1.50703 * 125.20190 * 0.02823 * 13 12 9 15 15 O 1.42896 * 109.47715 * 65.92043 * 14 13 12 16 16 Si 1.86304 * 109.46926 * 185.92234 * 14 13 12 17 17 S 1.75885 * 109.59405 * 179.97438 * 13 12 9 18 18 C 1.75880 * 90.97073 * 0.02562 * 17 13 12 19 19 C 1.33399 * 109.59553 * 359.72582 * 18 17 13 20 20 C 1.52999 * 109.47316 * 59.99367 * 6 5 4 21 21 C 1.52993 * 109.47678 * 300.00385 * 20 6 5 22 22 H 1.08996 * 109.47107 * 300.00035 * 1 2 3 23 23 H 1.09001 * 109.46969 * 60.00630 * 1 2 3 24 24 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46769 * 299.99801 * 4 2 1 26 26 H 1.08997 * 109.47578 * 60.00065 * 4 2 1 27 27 H 1.08997 * 109.47029 * 59.99466 * 5 4 2 28 28 H 1.08995 * 109.46957 * 179.97438 * 5 4 2 29 29 H 0.97006 * 119.99633 * 321.20286 * 8 6 5 30 30 H 1.08999 * 109.46737 * 305.91870 * 14 13 12 31 31 H 0.96701 * 114.00151 * 52.47031 * 15 14 13 32 32 H 1.48493 * 109.99804 * 183.98879 * 16 14 13 33 33 H 1.48505 * 109.99870 * 305.30591 * 16 14 13 34 34 H 1.07998 * 125.20619 * 179.97438 * 18 17 13 35 35 H 1.07993 * 122.54322 * 180.24388 * 19 18 17 36 36 H 1.09005 * 109.46620 * 60.00811 * 20 6 5 37 37 H 1.09003 * 109.47423 * 179.97438 * 20 6 5 38 38 H 1.09000 * 109.47217 * 300.00343 * 21 20 6 39 39 H 1.08998 * 109.47683 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7207 1.2496 6 6 4.0806 -1.4416 0.0004 7 1 3.7175 -2.4694 0.0003 8 7 5.5455 -1.4406 0.0004 9 16 6.3744 -2.7771 -0.5182 10 8 7.7544 -2.4452 -0.4491 11 8 5.8076 -3.8893 0.1607 12 6 5.9996 -2.9931 -2.2263 13 6 6.4153 -2.1417 -3.1653 14 6 7.2422 -0.9071 -2.9139 15 8 8.5350 -1.2881 -2.4391 16 14 7.4215 0.0537 -4.5000 17 16 5.8521 -2.6813 -4.7417 18 6 5.0597 -4.0734 -4.0154 19 6 5.2560 -4.0620 -2.6960 20 6 3.5705 -0.7205 -1.2488 21 6 2.0405 -0.7210 -1.2492 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6766 -0.2073 2.1392 26 1 1.6767 -1.7489 1.2494 27 1 3.9330 0.3070 1.2498 28 1 3.9333 -1.2341 2.1398 29 1 6.0300 -0.6570 0.3042 30 1 6.7491 -0.2857 -2.1664 31 1 8.9852 -1.9347 -2.9998 32 1 8.3137 1.2216 -4.2882 33 1 7.9747 -0.8218 -5.5644 34 1 4.5030 -4.8249 -4.5555 35 1 4.8617 -4.8268 -2.0434 36 1 3.9336 0.3073 -1.2487 37 1 3.9345 -1.2338 -2.1389 38 1 1.6775 -1.7488 -1.2493 39 1 1.6772 -0.2069 -2.1390 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:59 Heat of formation + Delta-G solvation = -79.135346 kcal Electronic energy + Delta-G solvation = -24244.771275 eV Core-core repulsion = 20793.231960 eV Total energy + Delta-G solvation = -3451.539315 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.01922 -39.57883 -38.37798 -37.43853 -36.94234 -35.85828 -31.88881 -31.60762 -31.46320 -27.45523 -26.48545 -24.41586 -23.57725 -22.24820 -21.78680 -20.91871 -20.04255 -19.24799 -18.62528 -18.11606 -17.27940 -16.97643 -16.35425 -16.10384 -15.64127 -15.48991 -15.17103 -15.13690 -15.03128 -14.46670 -14.18422 -14.08858 -13.95564 -13.87288 -13.26391 -13.19192 -13.09066 -13.04488 -12.93115 -12.87234 -12.65036 -12.59208 -12.20553 -11.98911 -11.84338 -11.57635 -11.43097 -11.22603 -11.06721 -10.78428 -10.36168 -10.17846 -9.81295 -5.09180 -0.75470 -0.50574 0.36557 0.61213 1.06537 1.12977 1.49747 1.87047 2.04051 2.68122 3.09615 3.41148 3.46702 3.70812 3.80888 3.89325 4.11205 4.14428 4.23059 4.24336 4.29673 4.36493 4.51954 4.56334 4.64911 4.69878 4.72471 4.86376 4.92888 4.97799 5.03961 5.11624 5.14336 5.21577 5.26664 5.30617 5.40652 5.46077 5.51107 5.66156 6.06340 6.37722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.122 4.122 6 C 0.147 3.853 7 H 0.081 0.919 8 N -1.102 6.102 9 S 2.708 3.292 10 O -0.959 6.959 11 O -0.994 6.994 12 C -0.663 4.663 13 C -0.105 4.105 14 C -0.082 4.082 15 O -0.509 6.509 16 Si 0.731 3.269 17 S 0.186 5.814 18 C -0.205 4.205 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.112 4.112 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.428 0.572 30 H 0.144 0.856 31 H 0.384 0.616 32 H -0.268 1.268 33 H -0.255 1.255 34 H 0.197 0.803 35 H 0.155 0.845 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 3.695 -4.479 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.161 4.161 6 C 0.040 3.960 7 H 0.099 0.901 8 N -0.864 5.864 9 S 2.796 3.204 10 O -0.949 6.949 11 O -0.984 6.984 12 C -0.765 4.765 13 C -0.226 4.226 14 C -0.193 4.193 15 O -0.316 6.316 16 Si 0.631 3.369 17 S 0.450 5.550 18 C -0.341 4.341 19 C -0.123 4.123 20 C -0.177 4.177 21 C -0.150 4.150 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.265 0.735 30 H 0.162 0.838 31 H 0.233 0.767 32 H -0.193 1.193 33 H -0.181 1.181 34 H 0.214 0.786 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.785 4.200 -5.685 8.536 hybrid contribution 0.645 -1.321 1.289 1.955 sum -4.140 2.879 -4.396 6.690 Atomic orbital electron populations 1.21836 0.95262 1.01733 1.01866 1.21170 0.95441 0.99923 0.94543 0.90522 1.21596 0.94185 1.01039 0.98430 1.21809 0.96238 1.01608 0.96481 1.20995 0.77090 1.00881 0.96985 0.90104 1.55399 1.15915 1.34234 1.80826 1.01299 0.72684 0.72895 0.73476 1.93671 1.31114 1.83464 1.86629 1.93542 1.79912 1.52520 1.72458 1.29703 1.15607 1.05564 1.25631 1.25068 1.00392 0.99963 0.97160 1.25249 0.84733 0.95723 1.13545 1.86867 1.27914 1.64321 1.52548 0.94627 0.90477 0.79155 0.72674 1.84395 1.45620 1.18827 1.06152 1.26229 1.06821 1.03403 0.97621 1.19836 0.98644 0.97702 0.96117 1.22107 0.96312 1.02346 0.96896 1.21563 0.94320 1.00940 0.98175 0.92784 0.92366 0.92994 0.91172 0.92148 0.89881 0.91773 0.73509 0.83819 0.76660 1.19331 1.18070 0.78611 0.82759 0.89505 0.91126 0.92184 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.65 9.19 71.98 0.66 1.31 16 2 C -0.09 0.47 2.72 -10.79 -0.03 0.44 16 3 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 4 C -0.11 0.45 5.20 30.60 0.16 0.61 16 5 C -0.12 0.46 5.48 30.60 0.17 0.62 16 6 C 0.15 -0.40 2.79 44.99 0.13 -0.28 16 7 H 0.08 -0.03 7.52 -2.38 -0.02 -0.05 16 8 N -1.10 1.54 5.38 -169.39 -0.91 0.63 16 9 S 2.71 15.06 5.35 -56.49 -0.30 14.76 16 10 O -0.96 -10.66 14.98 -119.05 -1.78 -12.44 16 11 O -0.99 -12.06 16.73 -128.00 -2.14 -14.20 16 12 C -0.66 -1.19 5.03 21.22 0.11 -1.08 16 13 C -0.10 0.10 5.40 24.59 0.13 0.24 16 14 C -0.08 0.12 2.22 71.24 0.16 0.28 16 15 O -0.51 -1.99 10.19 -127.13 -1.30 -3.29 16 16 Si 0.73 -2.66 31.10 68.60 2.13 -0.53 16 17 S 0.19 -0.71 20.60 -56.49 -1.16 -1.87 16 18 C -0.20 0.66 11.23 66.72 0.75 1.41 16 19 C -0.10 -0.06 9.70 21.22 0.21 0.15 16 20 C -0.14 0.83 5.53 30.59 0.17 1.00 16 21 C -0.11 0.64 5.21 30.59 0.16 0.80 16 22 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.06 -0.16 8.14 -2.39 -0.02 -0.17 16 27 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.43 -2.16 8.88 -96.74 -0.86 -3.02 16 30 H 0.14 -0.73 7.90 -2.39 -0.02 -0.75 16 31 H 0.38 -0.31 8.78 -74.06 -0.65 -0.96 16 32 H -0.27 -0.75 7.11 99.48 0.71 -0.04 16 33 H -0.26 0.15 7.11 99.48 0.71 0.86 16 34 H 0.20 -1.60 8.06 -2.91 -0.02 -1.63 16 35 H 0.15 0.11 7.74 -2.91 -0.02 0.08 16 36 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 37 H 0.07 -0.44 7.11 -2.39 -0.02 -0.46 16 38 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 Total: 0.00 -18.20 333.77 -3.11 -21.31 By element: Atomic # 1 Polarization: -9.45 SS G_CDS: -0.41 Total: -9.86 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 2.77 Total: 5.49 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -0.91 Total: 0.63 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -5.22 Total: -29.93 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.13 Total: -0.53 kcal Atomic # 16 Polarization: 14.35 SS G_CDS: -1.47 Total: 12.88 kcal Total: -18.20 -3.11 -21.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.829 kcal (2) G-P(sol) polarization free energy of solvation -18.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds