Wall clock time and date at job start Mon Mar 8 2021 13:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 C 1.52999 * 109.47254 * 120.00480 * 2 1 3 5 5 C 1.53001 * 109.46925 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47552 * 299.99841 * 5 4 2 7 7 H 1.09010 * 109.47094 * 300.00259 * 6 5 4 8 8 N 1.46493 * 109.47203 * 180.02562 * 6 5 4 9 9 S 1.65602 * 119.99932 * 95.00385 * 8 6 5 10 10 O 1.42097 * 106.40440 * 311.45614 * 9 8 6 11 11 O 1.42102 * 106.40088 * 178.53857 * 9 8 6 12 12 C 1.76202 * 107.22088 * 65.00051 * 9 8 6 13 13 C 1.33387 * 122.54196 * 90.02321 * 12 9 8 14 14 S 1.75883 * 109.59367 * 179.97438 * 13 12 9 15 15 C 1.75884 * 90.96803 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.20108 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47264 * 245.02418 * 16 15 14 18 18 Si 1.86300 * 109.47052 * 5.02150 * 16 15 14 19 19 C 1.33381 * 109.59847 * 0.22548 * 15 14 13 20 20 C 1.52999 * 109.47117 * 59.99826 * 6 5 4 21 21 C 1.52997 * 109.47401 * 300.00413 * 20 6 5 22 22 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47020 * 299.99782 * 1 2 3 24 24 H 1.09001 * 109.46768 * 59.99290 * 1 2 3 25 25 H 1.08995 * 109.47314 * 299.99552 * 4 2 1 26 26 H 1.08997 * 109.47000 * 59.99892 * 4 2 1 27 27 H 1.09008 * 109.46993 * 179.97438 * 5 4 2 28 28 H 1.08997 * 109.47010 * 60.00338 * 5 4 2 29 29 H 0.97001 * 120.00152 * 274.99239 * 8 6 5 30 30 H 1.07997 * 125.20104 * 0.02562 * 13 12 9 31 31 H 1.09001 * 109.47438 * 125.02161 * 16 15 14 32 32 H 0.96705 * 113.99788 * 59.99913 * 17 16 15 33 33 H 1.48506 * 110.00067 * 58.68537 * 18 16 15 34 34 H 1.48501 * 109.99793 * 179.97438 * 18 16 15 35 35 H 1.07998 * 122.54469 * 179.75023 * 19 15 14 36 36 H 1.09010 * 109.46785 * 60.00244 * 20 6 5 37 37 H 1.08998 * 109.47134 * 180.02562 * 20 6 5 38 38 H 1.08994 * 109.47287 * 179.97438 * 21 20 6 39 39 H 1.09001 * 109.46992 * 299.99927 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0796 -1.4434 -0.0005 7 1 3.7159 -2.4710 -0.0003 8 7 5.5445 -1.4443 -0.0005 9 16 6.3716 -2.7448 0.6055 10 8 5.7905 -3.0367 1.8689 11 8 7.7526 -2.4578 0.4329 12 6 6.0155 -4.1208 -0.4359 13 6 6.7536 -4.4209 -1.5057 14 16 6.0981 -5.8512 -2.2920 15 6 4.8205 -5.9639 -1.0885 16 6 3.7453 -7.0194 -1.0593 17 8 2.4715 -6.4080 -1.2735 18 14 4.0669 -8.2709 -2.4013 19 6 4.9455 -4.9691 -0.2088 20 6 3.5695 -0.7221 -1.2497 21 6 2.0395 -0.7216 -1.2494 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.6768 -0.2076 2.1392 26 1 1.6767 -1.7490 1.2491 27 1 3.9334 -1.2354 2.1390 28 1 3.9337 0.3057 1.2487 29 1 6.0300 -0.6834 -0.3555 30 1 7.6214 -3.8704 -1.8377 31 1 3.7509 -7.5171 -0.0895 32 1 2.3945 -5.9456 -2.1193 33 1 5.4023 -8.8912 -2.2079 34 1 3.0137 -9.3176 -2.3826 35 1 4.2653 -4.8372 0.6196 36 1 3.9332 0.3055 -1.2498 37 1 3.9321 -1.2364 -2.1397 38 1 1.6762 -0.2073 -2.1391 39 1 1.6759 -1.7491 -1.2492 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:05 Heat of formation + Delta-G solvation = -87.509464 kcal Electronic energy + Delta-G solvation = -23519.934883 eV Core-core repulsion = 20068.032439 eV Total energy + Delta-G solvation = -3451.902444 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.12355 -39.52960 -38.18336 -37.61535 -36.82727 -35.95679 -31.89158 -31.80573 -31.59713 -27.28685 -26.62102 -24.98749 -23.73530 -22.36712 -21.47178 -20.99552 -20.05669 -19.24931 -18.48296 -17.94955 -17.75606 -17.30666 -16.41920 -16.12218 -15.62298 -15.42090 -15.31699 -15.20350 -14.99604 -14.57923 -14.32742 -14.25062 -14.06792 -13.99405 -13.29591 -13.26718 -13.10761 -13.01179 -12.94589 -12.92068 -12.75945 -12.50620 -12.26256 -12.14847 -12.01123 -11.70034 -11.59203 -11.38685 -11.15434 -10.74457 -10.49738 -10.23891 -9.91290 -5.30832 -0.75209 -0.50723 0.26293 0.52349 0.96409 1.07694 1.46293 1.78027 2.04590 2.73213 3.17915 3.32769 3.55295 3.56512 3.65790 3.77125 3.78832 3.97437 4.10772 4.12965 4.22618 4.30680 4.37030 4.42123 4.48622 4.56222 4.59491 4.71869 4.82063 4.84564 4.88027 4.98637 5.01316 5.03149 5.12263 5.18493 5.27872 5.31387 5.37623 5.50525 5.88109 6.33484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.140 4.140 6 C 0.155 3.845 7 H 0.086 0.914 8 N -1.111 6.111 9 S 2.707 3.293 10 O -0.947 6.947 11 O -0.957 6.957 12 C -0.688 4.688 13 C -0.081 4.081 14 S 0.157 5.843 15 C -0.228 4.228 16 C -0.027 4.027 17 O -0.532 6.532 18 Si 0.656 3.344 19 C -0.045 4.045 20 C -0.124 4.124 21 C -0.113 4.113 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.419 0.581 30 H 0.186 0.814 31 H 0.127 0.873 32 H 0.380 0.620 33 H -0.238 1.238 34 H -0.231 1.231 35 H 0.156 0.844 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 1.516 -5.916 6.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.179 4.179 6 C 0.048 3.952 7 H 0.104 0.896 8 N -0.870 5.870 9 S 2.793 3.207 10 O -0.937 6.937 11 O -0.948 6.948 12 C -0.787 4.787 13 C -0.220 4.220 14 S 0.421 5.579 15 C -0.346 4.346 16 C -0.140 4.140 17 O -0.337 6.337 18 Si 0.555 3.445 19 C -0.074 4.074 20 C -0.163 4.163 21 C -0.151 4.151 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.254 0.746 30 H 0.203 0.797 31 H 0.144 0.856 32 H 0.228 0.772 33 H -0.162 1.162 34 H -0.154 1.154 35 H 0.174 0.826 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.731 -0.662 -6.012 6.291 hybrid contribution -0.264 0.985 0.997 1.427 sum -1.995 0.324 -5.015 5.407 Atomic orbital electron populations 1.21836 0.95019 1.01996 1.01818 1.21197 0.95695 0.99751 0.94755 0.91066 1.21586 0.94527 1.01187 0.97908 1.22098 0.96074 1.01634 0.98093 1.20862 0.77517 1.00685 0.96150 0.89641 1.55650 1.15759 1.34206 1.81426 1.01689 0.72780 0.72524 0.73676 1.93610 1.78547 1.84364 1.37138 1.93612 1.30675 1.83980 1.86497 1.30072 1.07875 1.24417 1.16362 1.25905 1.01296 0.98887 0.95945 1.84341 1.21897 1.24053 1.27592 1.25057 1.03626 1.04396 1.01507 1.24457 0.82301 0.98162 1.09096 1.86553 1.30041 1.73778 1.43323 0.95166 0.82462 0.81760 0.85098 1.19628 0.95735 0.92652 0.99374 1.21842 0.96367 1.01259 0.96862 1.21585 0.94201 1.01281 0.98072 0.92555 0.92594 0.92658 0.91357 0.91542 0.90225 0.91184 0.74576 0.79701 0.85605 0.77234 1.16226 1.15387 0.82608 0.91036 0.91158 0.91355 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 9.19 37.16 0.34 0.58 16 2 C -0.10 0.17 2.72 -90.62 -0.25 -0.07 16 3 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 4 C -0.11 0.13 5.20 -26.73 -0.14 -0.01 16 5 C -0.14 0.10 5.53 -26.73 -0.15 -0.05 16 6 C 0.15 -0.25 2.65 -67.94 -0.18 -0.43 16 7 H 0.09 -0.16 7.37 -51.92 -0.38 -0.54 16 8 N -1.11 1.70 5.47 -4.89 -0.03 1.67 16 9 S 2.71 3.65 5.71 -107.50 -0.61 3.04 16 10 O -0.95 -4.11 16.90 -57.17 -0.97 -5.08 16 11 O -0.96 -3.85 17.64 -57.17 -1.01 -4.85 16 12 C -0.69 -0.25 5.72 -41.21 -0.24 -0.48 16 13 C -0.08 0.06 10.70 29.04 0.31 0.37 16 14 S 0.16 -0.23 20.60 -107.50 -2.21 -2.44 16 15 C -0.23 0.11 5.70 -36.00 -0.21 -0.10 16 16 C -0.03 0.03 2.96 36.01 0.11 0.13 16 17 O -0.53 0.57 12.88 -35.23 -0.45 0.11 16 18 Si 0.66 -1.09 30.98 -169.99 -5.27 -6.36 16 19 C -0.05 -0.02 9.12 -41.21 -0.38 -0.40 16 20 C -0.12 0.35 5.45 -26.73 -0.15 0.20 16 21 C -0.11 0.28 5.20 -26.73 -0.14 0.14 16 22 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 23 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.08 0.07 7.64 -51.92 -0.40 -0.32 16 28 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.42 -1.40 8.84 -34.47 -0.30 -1.70 16 30 H 0.19 -0.49 8.00 -52.49 -0.42 -0.91 16 31 H 0.13 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.38 -1.90 8.70 45.56 0.40 -1.51 16 33 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 34 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 35 H 0.16 0.05 7.97 -52.49 -0.42 -0.37 16 36 H 0.07 -0.21 8.14 -51.92 -0.42 -0.64 16 37 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 38 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 340.59 15.07 5.13 5.13 Total: 0.00 -8.08 340.59 -12.26 -20.34 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: -5.79 Total: -11.46 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.06 Total: -0.10 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -0.03 Total: 1.67 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -2.43 Total: -9.82 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -5.27 Total: -6.36 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.83 Total: 0.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -8.08 -12.26 -20.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.170 kcal (2) G-P(sol) polarization free energy of solvation -8.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds