Wall clock time and date at job start Mon Mar 8 2021 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 C 1.52999 * 109.47254 * 120.00480 * 2 1 3 5 5 C 1.53001 * 109.46925 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47552 * 299.99841 * 5 4 2 7 7 H 1.09010 * 109.47094 * 300.00259 * 6 5 4 8 8 N 1.46493 * 109.47203 * 180.02562 * 6 5 4 9 9 S 1.65602 * 119.99932 * 95.00385 * 8 6 5 10 10 O 1.42097 * 106.40440 * 311.45614 * 9 8 6 11 11 O 1.42102 * 106.40088 * 178.53857 * 9 8 6 12 12 C 1.76202 * 107.22088 * 65.00051 * 9 8 6 13 13 C 1.33387 * 122.54196 * 90.02321 * 12 9 8 14 14 S 1.75883 * 109.59367 * 179.97438 * 13 12 9 15 15 C 1.75884 * 90.96803 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.20108 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47264 * 245.02418 * 16 15 14 18 18 Si 1.86300 * 109.47052 * 5.02150 * 16 15 14 19 19 C 1.33381 * 109.59847 * 0.22548 * 15 14 13 20 20 C 1.52999 * 109.47117 * 59.99826 * 6 5 4 21 21 C 1.52997 * 109.47401 * 300.00413 * 20 6 5 22 22 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47020 * 299.99782 * 1 2 3 24 24 H 1.09001 * 109.46768 * 59.99290 * 1 2 3 25 25 H 1.08995 * 109.47314 * 299.99552 * 4 2 1 26 26 H 1.08997 * 109.47000 * 59.99892 * 4 2 1 27 27 H 1.09008 * 109.46993 * 179.97438 * 5 4 2 28 28 H 1.08997 * 109.47010 * 60.00338 * 5 4 2 29 29 H 0.97001 * 120.00152 * 274.99239 * 8 6 5 30 30 H 1.07997 * 125.20104 * 0.02562 * 13 12 9 31 31 H 1.09001 * 109.47438 * 125.02161 * 16 15 14 32 32 H 0.96705 * 113.99788 * 59.99913 * 17 16 15 33 33 H 1.48506 * 110.00067 * 58.68537 * 18 16 15 34 34 H 1.48501 * 109.99793 * 179.97438 * 18 16 15 35 35 H 1.07998 * 122.54469 * 179.75023 * 19 15 14 36 36 H 1.09010 * 109.46785 * 60.00244 * 20 6 5 37 37 H 1.08998 * 109.47134 * 180.02562 * 20 6 5 38 38 H 1.08994 * 109.47287 * 179.97438 * 21 20 6 39 39 H 1.09001 * 109.46992 * 299.99927 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0796 -1.4434 -0.0005 7 1 3.7159 -2.4710 -0.0003 8 7 5.5445 -1.4443 -0.0005 9 16 6.3716 -2.7448 0.6055 10 8 5.7905 -3.0367 1.8689 11 8 7.7526 -2.4578 0.4329 12 6 6.0155 -4.1208 -0.4359 13 6 6.7536 -4.4209 -1.5057 14 16 6.0981 -5.8512 -2.2920 15 6 4.8205 -5.9639 -1.0885 16 6 3.7453 -7.0194 -1.0593 17 8 2.4715 -6.4080 -1.2735 18 14 4.0669 -8.2709 -2.4013 19 6 4.9455 -4.9691 -0.2088 20 6 3.5695 -0.7221 -1.2497 21 6 2.0395 -0.7216 -1.2494 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.6768 -0.2076 2.1392 26 1 1.6767 -1.7490 1.2491 27 1 3.9334 -1.2354 2.1390 28 1 3.9337 0.3057 1.2487 29 1 6.0300 -0.6834 -0.3555 30 1 7.6214 -3.8704 -1.8377 31 1 3.7509 -7.5171 -0.0895 32 1 2.3945 -5.9456 -2.1193 33 1 5.4023 -8.8912 -2.2079 34 1 3.0137 -9.3176 -2.3826 35 1 4.2653 -4.8372 0.6196 36 1 3.9332 0.3055 -1.2498 37 1 3.9321 -1.2364 -2.1397 38 1 1.6762 -0.2073 -2.1391 39 1 1.6759 -1.7491 -1.2492 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:04 Heat of formation + Delta-G solvation = -87.774177 kcal Electronic energy + Delta-G solvation = -23519.946362 eV Core-core repulsion = 20068.032439 eV Total energy + Delta-G solvation = -3451.913923 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.079 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.01250 -39.47967 -38.39096 -37.53285 -37.04787 -35.87385 -31.83574 -31.66618 -31.51131 -27.23076 -26.51101 -24.96721 -23.60297 -22.26023 -21.45668 -20.89088 -20.07452 -19.19592 -18.55286 -17.92296 -17.71151 -17.27813 -16.36842 -16.15630 -15.54818 -15.39308 -15.18222 -15.09507 -14.95160 -14.49279 -14.29524 -14.21976 -14.06731 -13.96868 -13.37985 -13.27150 -13.14452 -13.09379 -12.96323 -12.94966 -12.65918 -12.53947 -12.21245 -12.02383 -11.87248 -11.68589 -11.46812 -11.24620 -11.06381 -10.66110 -10.41527 -10.18604 -9.83803 -5.20799 -0.80723 -0.48209 0.32950 0.57485 0.96096 1.16049 1.53482 1.84433 2.03722 2.65190 3.18902 3.42340 3.63304 3.68965 3.79267 3.87707 3.90187 4.11000 4.17808 4.23477 4.31706 4.37700 4.49892 4.53703 4.62062 4.64003 4.68684 4.84545 4.88711 4.95150 5.01779 5.02054 5.11798 5.21782 5.25555 5.28228 5.38898 5.43683 5.49845 5.63603 6.05258 6.66259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.142 4.142 6 C 0.152 3.848 7 H 0.087 0.913 8 N -1.099 6.099 9 S 2.721 3.279 10 O -0.984 6.984 11 O -0.987 6.987 12 C -0.694 4.694 13 C -0.085 4.085 14 S 0.195 5.805 15 C -0.233 4.233 16 C -0.032 4.032 17 O -0.544 6.544 18 Si 0.735 3.265 19 C -0.059 4.059 20 C -0.119 4.119 21 C -0.112 4.112 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.429 0.571 30 H 0.203 0.797 31 H 0.119 0.881 32 H 0.397 0.603 33 H -0.267 1.267 34 H -0.269 1.269 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 1.755 -7.592 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.181 4.181 6 C 0.046 3.954 7 H 0.105 0.895 8 N -0.861 5.861 9 S 2.810 3.190 10 O -0.973 6.973 11 O -0.977 6.977 12 C -0.796 4.796 13 C -0.224 4.224 14 S 0.459 5.541 15 C -0.351 4.351 16 C -0.144 4.144 17 O -0.353 6.353 18 Si 0.637 3.363 19 C -0.088 4.088 20 C -0.158 4.158 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.220 0.780 31 H 0.137 0.863 32 H 0.248 0.752 33 H -0.192 1.192 34 H -0.194 1.194 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.786 -0.371 -7.683 7.897 hybrid contribution -0.286 0.864 1.504 1.758 sum -2.072 0.493 -6.179 6.536 Atomic orbital electron populations 1.21833 0.95125 1.01898 1.01798 1.21176 0.95571 0.99719 0.94716 0.91058 1.21572 0.94147 1.01101 0.98309 1.22099 0.96468 1.01714 0.97810 1.20946 0.77100 1.00938 0.96425 0.89535 1.55356 1.15803 1.33776 1.81156 1.00917 0.71975 0.72868 0.73271 1.93565 1.78965 1.85100 1.39714 1.93565 1.32571 1.84640 1.86934 1.29790 1.08609 1.24292 1.16870 1.26227 1.01473 0.99223 0.95487 1.84216 1.20651 1.22984 1.26287 1.25186 1.04059 1.04102 1.01757 1.24566 0.82354 0.98286 1.09238 1.86519 1.29821 1.74041 1.44881 0.94294 0.78880 0.79524 0.83599 1.19649 0.96045 0.93327 0.99731 1.21821 0.96123 1.01513 0.96363 1.21582 0.94299 1.01306 0.97810 0.92690 0.93016 0.92277 0.91782 0.91855 0.92269 0.90771 0.73369 0.77957 0.86339 0.75230 1.19243 1.19427 0.83260 0.90470 0.89996 0.90635 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 9.19 71.98 0.66 1.15 16 2 C -0.09 0.35 2.72 -10.79 -0.03 0.32 16 3 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 4 C -0.11 0.18 5.20 30.59 0.16 0.34 16 5 C -0.14 0.06 5.53 30.59 0.17 0.23 16 6 C 0.15 -0.46 2.65 44.99 0.12 -0.34 16 7 H 0.09 -0.27 7.37 -2.38 -0.02 -0.29 16 8 N -1.10 2.99 5.47 -169.40 -0.93 2.07 16 9 S 2.72 10.14 5.71 -56.49 -0.32 9.82 16 10 O -0.98 -10.44 16.90 -128.00 -2.16 -12.60 16 11 O -0.99 -8.77 17.64 -128.00 -2.26 -11.03 16 12 C -0.69 -0.66 5.72 21.22 0.12 -0.54 16 13 C -0.08 0.19 10.70 66.72 0.71 0.90 16 14 S 0.19 -0.79 20.60 -56.49 -1.16 -1.95 16 15 C -0.23 0.27 5.70 24.59 0.14 0.41 16 16 C -0.03 0.07 2.96 71.24 0.21 0.28 16 17 O -0.54 1.33 12.88 -148.98 -1.92 -0.58 16 18 Si 0.73 -2.64 30.98 68.60 2.13 -0.52 16 19 C -0.06 -0.08 9.12 21.22 0.19 0.11 16 20 C -0.12 0.78 5.45 30.59 0.17 0.94 16 21 C -0.11 0.65 5.20 30.60 0.16 0.81 16 22 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.06 0.23 7.64 -2.38 -0.02 0.21 16 28 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.43 -2.90 8.84 -96.74 -0.85 -3.76 16 30 H 0.20 -1.30 8.00 -2.91 -0.02 -1.32 16 31 H 0.12 -0.10 7.96 -2.39 -0.02 -0.12 16 32 H 0.40 -4.36 8.70 -74.05 -0.64 -5.00 16 33 H -0.27 -0.29 7.11 99.48 0.71 0.42 16 34 H -0.27 -0.71 7.11 99.48 0.71 -0.01 16 35 H 0.15 0.32 7.97 -2.91 -0.02 0.30 16 36 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 37 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: 0.00 -18.86 340.59 -4.24 -23.10 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -0.40 Total: -12.92 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 2.79 Total: 4.62 kcal Atomic # 7 Polarization: 2.99 SS G_CDS: -0.93 Total: 2.07 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -6.34 Total: -24.21 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.13 Total: -0.52 kcal Atomic # 16 Polarization: 9.35 SS G_CDS: -1.49 Total: 7.87 kcal Total: -18.86 -4.24 -23.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.676 kcal (2) G-P(sol) polarization free energy of solvation -18.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds