Wall clock time and date at job start Mon Mar 8 2021 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33390 * 125.20684 * 2 1 4 4 C 1.50701 * 122.53817 * 359.97316 * 3 2 1 5 5 O 1.42904 * 109.47131 * 292.44441 * 4 3 2 6 6 Si 1.86299 * 109.46999 * 52.44509 * 4 3 2 7 7 C 1.38424 * 114.92478 * 180.24708 * 3 2 1 8 8 S 1.76204 * 122.54093 * 179.72745 * 7 3 2 9 9 O 1.42094 * 106.40062 * 190.26705 * 8 7 3 10 10 O 1.42103 * 106.39955 * 323.18704 * 8 7 3 11 11 N 1.65598 * 107.21807 * 76.72517 * 8 7 3 12 12 C 1.46501 * 119.99696 * 62.55920 * 11 8 7 13 13 H 1.09003 * 109.47468 * 335.00877 * 12 11 8 14 14 C 1.52998 * 109.47426 * 95.00809 * 12 11 8 15 15 C 1.52998 * 109.47725 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47083 * 300.00349 * 15 14 12 17 17 H 1.09003 * 109.47008 * 299.99818 * 16 15 14 18 18 C 1.53001 * 109.47362 * 179.97438 * 16 15 14 19 19 C 1.53005 * 109.47359 * 59.99426 * 16 15 14 20 20 C 1.52993 * 109.46993 * 300.00352 * 19 16 15 21 21 C 1.33389 * 114.91914 * 359.49064 * 7 3 2 22 22 C 1.50696 * 125.20537 * 180.21048 * 21 7 3 23 23 S 1.75882 * 125.20454 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46626 * 85.03568 * 1 2 3 25 25 H 1.08996 * 109.47469 * 205.04064 * 1 2 3 26 26 H 1.09004 * 109.46987 * 325.04109 * 1 2 3 27 27 H 1.09001 * 109.47656 * 172.44648 * 4 3 2 28 28 H 0.96698 * 114.00017 * 56.42599 * 5 4 3 29 29 H 1.48497 * 110.00097 * 63.72724 * 6 4 3 30 30 H 1.48499 * 110.00200 * 185.05034 * 6 4 3 31 31 H 0.96998 * 120.00518 * 242.56004 * 11 8 7 32 32 H 1.09000 * 109.46879 * 300.00085 * 14 12 11 33 33 H 1.09003 * 109.46741 * 59.99623 * 14 12 11 34 34 H 1.08996 * 109.47444 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46551 * 59.99995 * 15 14 12 36 36 H 1.09005 * 109.46594 * 299.99844 * 18 16 15 37 37 H 1.08996 * 109.47122 * 59.99438 * 18 16 15 38 38 H 1.08997 * 109.47150 * 180.02562 * 18 16 15 39 39 H 1.09000 * 109.47114 * 179.97438 * 19 16 15 40 40 H 1.09003 * 109.46741 * 60.00227 * 19 16 15 41 41 H 1.09003 * 109.47275 * 299.99548 * 20 19 16 42 42 H 1.09003 * 109.47275 * 179.97438 * 20 19 16 43 43 H 1.08996 * 109.47291 * 181.75882 * 22 21 7 44 44 H 1.08998 * 109.47041 * 301.75999 * 22 21 7 45 45 H 1.09003 * 109.47457 * 61.75807 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7053 2.4847 -0.0006 5 8 1.0493 2.7304 -1.2462 6 14 0.4787 2.6543 1.3914 7 6 3.6380 0.8428 -0.0054 8 16 4.8357 2.1352 -0.0135 9 8 6.0911 1.5172 -0.2606 10 8 4.3043 3.1695 -0.8303 11 7 4.9092 2.7450 1.5244 12 6 5.3387 1.8881 2.6323 13 1 5.1431 0.8453 2.3821 14 6 6.8367 2.0818 2.8759 15 6 7.2851 1.1874 4.0334 16 6 6.5100 1.5629 5.2980 17 1 6.7056 2.6057 5.5477 18 6 6.9580 0.6681 6.4554 19 6 5.0119 1.3692 5.0544 20 6 4.5636 2.2636 3.8969 21 6 3.9751 -0.4477 0.0009 22 6 5.3860 -0.9771 0.0016 23 16 2.5209 -1.4371 0.0006 24 1 -0.3633 0.0889 -1.0239 25 1 -0.3634 -0.9310 0.4349 26 1 -0.3633 0.8423 0.5889 27 1 2.5104 3.2069 0.1346 28 1 0.3560 2.0906 -1.4585 29 1 1.1664 2.4899 2.6972 30 1 -0.1807 3.9834 1.3282 31 1 4.6680 3.6695 1.6917 32 1 7.3888 1.8146 1.9749 33 1 7.0322 3.1245 3.1261 34 1 8.3524 1.3250 4.2066 35 1 7.0894 0.1445 3.7836 36 1 6.7620 -0.3747 6.2053 37 1 8.0252 0.8056 6.6290 38 1 6.4054 0.9353 7.3561 39 1 4.4598 1.6363 5.9555 40 1 4.8164 0.3263 4.8046 41 1 4.7592 3.3064 4.1467 42 1 3.4965 2.1253 3.7231 43 1 5.3653 -2.0666 -0.0241 44 1 5.9148 -0.6030 -0.8750 45 1 5.8985 -0.6447 0.9043 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:13 Heat of formation + Delta-G solvation = -88.806467 kcal Electronic energy + Delta-G solvation = -28618.323387 eV Core-core repulsion = 24855.289463 eV Total energy + Delta-G solvation = -3763.033924 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 6.43 seconds Orbital eigenvalues (eV) -40.39854 -40.14067 -38.37182 -37.12930 -36.82874 -36.01084 -34.29742 -31.86398 -31.67044 -31.03299 -28.07506 -26.67445 -26.00297 -23.78911 -23.26311 -22.42024 -21.21036 -20.64761 -20.02481 -18.92463 -18.52067 -17.95433 -17.54208 -16.93274 -16.14953 -15.95397 -15.84431 -15.64765 -15.36866 -15.31539 -15.21972 -14.68327 -14.59914 -14.51976 -14.27123 -14.16200 -14.07682 -13.71069 -13.45829 -13.33922 -13.31100 -13.18408 -13.02120 -12.97713 -12.78312 -12.73585 -12.60372 -12.23075 -12.19240 -12.06122 -11.83262 -11.67650 -11.63549 -11.41926 -11.20135 -10.52666 -10.49339 -10.02640 -9.51658 -5.00171 -0.72115 -0.46373 0.34475 0.64874 0.81372 1.25764 1.57536 1.93103 1.99512 2.72054 3.28441 3.40531 3.48404 3.52939 3.59768 3.65595 3.73582 3.88968 3.90309 3.94838 4.05266 4.10625 4.17961 4.25265 4.30859 4.33583 4.36952 4.42874 4.48370 4.51437 4.54969 4.64738 4.70698 4.77102 4.82968 4.90969 4.93703 4.99232 5.03976 5.05969 5.13063 5.14431 5.22251 5.26420 5.32279 5.44736 5.83295 6.55615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.063 4.063 4 C -0.065 4.065 5 O -0.521 6.521 6 Si 0.646 3.354 7 C -0.683 4.683 8 S 2.699 3.301 9 O -0.948 6.948 10 O -0.945 6.945 11 N -1.116 6.116 12 C 0.156 3.844 13 H 0.082 0.918 14 C -0.140 4.140 15 C -0.113 4.113 16 C -0.096 4.096 17 H 0.072 0.928 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.111 4.111 23 S 0.168 5.832 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.370 0.630 29 H -0.244 1.244 30 H -0.239 1.239 31 H 0.418 0.582 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -4.889 4.542 7.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.314 4.314 3 C -0.074 4.074 4 C -0.177 4.177 5 O -0.326 6.326 6 Si 0.544 3.456 7 C -0.782 4.782 8 S 2.786 3.214 9 O -0.938 6.938 10 O -0.935 6.935 11 N -0.875 5.875 12 C 0.049 3.951 13 H 0.100 0.900 14 C -0.179 4.179 15 C -0.151 4.151 16 C -0.114 4.114 17 H 0.090 0.910 18 C -0.206 4.206 19 C -0.151 4.151 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.169 4.169 23 S 0.434 5.566 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.217 0.783 29 H -0.168 1.168 30 H -0.163 1.163 31 H 0.253 0.747 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.480 -5.452 4.477 7.478 hybrid contribution 0.218 1.446 0.032 1.463 sum -2.262 -4.006 4.510 6.442 Atomic orbital electron populations 1.20547 0.87172 1.02797 1.03411 1.24296 1.00256 0.95353 1.11452 1.18558 0.90700 0.96723 1.01372 1.25150 1.02955 0.93083 0.96517 1.86648 1.53921 1.54763 1.37245 0.95013 0.86712 0.87106 0.76764 1.29502 1.11927 1.13366 1.23424 1.01894 0.73765 0.73403 0.72305 1.93593 1.39332 1.77550 1.83330 1.93640 1.79918 1.55126 1.64780 1.55740 1.83669 1.22336 1.25743 1.20846 0.94663 0.93230 0.86356 0.89967 1.22109 0.94806 1.01210 0.99761 1.21586 1.00095 0.99624 0.93837 1.21201 0.94715 1.00322 0.95192 0.90975 1.21834 1.01324 0.99689 0.97782 1.21580 0.95820 0.99868 0.97821 1.21881 0.99881 1.00956 0.93970 1.24659 1.00906 0.94999 0.96595 1.20955 0.88117 1.01712 1.06162 1.84370 0.94890 1.07980 1.69332 0.88982 0.89369 0.89832 0.86255 0.78277 1.16751 1.16266 0.74701 0.90076 0.91061 0.91224 0.91671 0.92611 0.92512 0.92625 0.91303 0.91617 0.90916 0.91267 0.90300 0.87216 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.34 8.73 36.00 0.31 0.65 16 2 C -0.20 0.13 6.02 -36.00 -0.22 -0.09 16 3 C -0.06 -0.09 4.54 -106.25 -0.48 -0.58 16 4 C -0.06 -0.14 2.36 36.01 0.09 -0.06 16 5 O -0.52 -1.49 12.85 -35.23 -0.45 -1.95 16 6 Si 0.65 -0.01 28.51 -169.99 -4.85 -4.86 16 7 C -0.68 -1.37 5.53 -41.21 -0.23 -1.59 16 8 S 2.70 7.91 5.12 -107.50 -0.55 7.36 16 9 O -0.95 -3.81 13.94 -57.17 -0.80 -4.60 16 10 O -0.94 -5.96 15.48 -57.17 -0.88 -6.84 16 11 N -1.12 -0.08 5.47 -4.89 -0.03 -0.11 16 12 C 0.16 -0.13 2.67 -67.93 -0.18 -0.31 16 13 H 0.08 -0.12 7.08 -51.93 -0.37 -0.48 16 14 C -0.14 0.09 5.53 -26.73 -0.15 -0.05 16 15 C -0.11 0.16 5.20 -26.73 -0.14 0.02 16 16 C -0.10 0.16 2.72 -90.62 -0.25 -0.09 16 17 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 18 C -0.15 0.25 9.19 37.16 0.34 0.59 16 19 C -0.11 0.20 5.20 -26.73 -0.14 0.06 16 20 C -0.13 0.18 5.45 -26.74 -0.15 0.04 16 21 C -0.05 -0.03 6.51 -36.01 -0.23 -0.27 16 22 C -0.11 0.06 8.63 36.00 0.31 0.37 16 23 S 0.17 -0.14 23.31 -107.50 -2.51 -2.65 16 24 H 0.09 -0.52 7.65 -51.93 -0.40 -0.92 16 25 H 0.09 -0.47 8.14 -51.93 -0.42 -0.90 16 26 H 0.08 -0.42 3.25 -51.93 -0.17 -0.59 16 27 H 0.12 0.41 5.05 -51.93 -0.26 0.15 16 28 H 0.37 -0.62 7.06 45.56 0.32 -0.30 16 29 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 30 H -0.24 -0.65 7.11 56.52 0.40 -0.24 16 31 H 0.42 -0.61 8.84 -34.47 -0.30 -0.91 16 32 H 0.08 0.04 7.64 -51.93 -0.40 -0.36 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 36 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16 37 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 42 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 44 H 0.11 0.06 6.98 -51.93 -0.36 -0.31 16 45 H 0.09 -0.13 7.21 -51.93 -0.37 -0.50 16 LS Contribution 363.81 15.07 5.48 5.48 Total: 0.00 -8.39 363.81 -12.70 -21.09 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -7.01 Total: -11.62 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.11 Total: -1.30 kcal Atomic # 7 Polarization: -0.08 SS G_CDS: -0.03 Total: -0.11 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -2.13 Total: -13.39 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: -4.85 Total: -4.86 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -3.06 Total: 4.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -8.39 -12.70 -21.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.719 kcal (2) G-P(sol) polarization free energy of solvation -8.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.43 seconds