Wall clock time and date at job start Mon Mar 8 2021 13:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33390 * 125.20684 * 2 1 4 4 C 1.50701 * 122.53817 * 359.97316 * 3 2 1 5 5 O 1.42904 * 109.47131 * 292.44441 * 4 3 2 6 6 Si 1.86299 * 109.46999 * 52.44509 * 4 3 2 7 7 C 1.38424 * 114.92478 * 180.24708 * 3 2 1 8 8 S 1.76204 * 122.54093 * 179.72745 * 7 3 2 9 9 O 1.42094 * 106.40062 * 190.26705 * 8 7 3 10 10 O 1.42103 * 106.39955 * 323.18704 * 8 7 3 11 11 N 1.65598 * 107.21807 * 76.72517 * 8 7 3 12 12 C 1.46501 * 119.99696 * 62.55920 * 11 8 7 13 13 H 1.09003 * 109.47468 * 335.00877 * 12 11 8 14 14 C 1.52998 * 109.47426 * 95.00809 * 12 11 8 15 15 C 1.52998 * 109.47725 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47083 * 300.00349 * 15 14 12 17 17 H 1.09003 * 109.47008 * 299.99818 * 16 15 14 18 18 C 1.53001 * 109.47362 * 179.97438 * 16 15 14 19 19 C 1.53005 * 109.47359 * 59.99426 * 16 15 14 20 20 C 1.52993 * 109.46993 * 300.00352 * 19 16 15 21 21 C 1.33389 * 114.91914 * 359.49064 * 7 3 2 22 22 C 1.50696 * 125.20537 * 180.21048 * 21 7 3 23 23 S 1.75882 * 125.20454 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46626 * 85.03568 * 1 2 3 25 25 H 1.08996 * 109.47469 * 205.04064 * 1 2 3 26 26 H 1.09004 * 109.46987 * 325.04109 * 1 2 3 27 27 H 1.09001 * 109.47656 * 172.44648 * 4 3 2 28 28 H 0.96698 * 114.00017 * 56.42599 * 5 4 3 29 29 H 1.48497 * 110.00097 * 63.72724 * 6 4 3 30 30 H 1.48499 * 110.00200 * 185.05034 * 6 4 3 31 31 H 0.96998 * 120.00518 * 242.56004 * 11 8 7 32 32 H 1.09000 * 109.46879 * 300.00085 * 14 12 11 33 33 H 1.09003 * 109.46741 * 59.99623 * 14 12 11 34 34 H 1.08996 * 109.47444 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46551 * 59.99995 * 15 14 12 36 36 H 1.09005 * 109.46594 * 299.99844 * 18 16 15 37 37 H 1.08996 * 109.47122 * 59.99438 * 18 16 15 38 38 H 1.08997 * 109.47150 * 180.02562 * 18 16 15 39 39 H 1.09000 * 109.47114 * 179.97438 * 19 16 15 40 40 H 1.09003 * 109.46741 * 60.00227 * 19 16 15 41 41 H 1.09003 * 109.47275 * 299.99548 * 20 19 16 42 42 H 1.09003 * 109.47275 * 179.97438 * 20 19 16 43 43 H 1.08996 * 109.47291 * 181.75882 * 22 21 7 44 44 H 1.08998 * 109.47041 * 301.75999 * 22 21 7 45 45 H 1.09003 * 109.47457 * 61.75807 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7053 2.4847 -0.0006 5 8 1.0493 2.7304 -1.2462 6 14 0.4787 2.6543 1.3914 7 6 3.6380 0.8428 -0.0054 8 16 4.8357 2.1352 -0.0135 9 8 6.0911 1.5172 -0.2606 10 8 4.3043 3.1695 -0.8303 11 7 4.9092 2.7450 1.5244 12 6 5.3387 1.8881 2.6323 13 1 5.1431 0.8453 2.3821 14 6 6.8367 2.0818 2.8759 15 6 7.2851 1.1874 4.0334 16 6 6.5100 1.5629 5.2980 17 1 6.7056 2.6057 5.5477 18 6 6.9580 0.6681 6.4554 19 6 5.0119 1.3692 5.0544 20 6 4.5636 2.2636 3.8969 21 6 3.9751 -0.4477 0.0009 22 6 5.3860 -0.9771 0.0016 23 16 2.5209 -1.4371 0.0006 24 1 -0.3633 0.0889 -1.0239 25 1 -0.3634 -0.9310 0.4349 26 1 -0.3633 0.8423 0.5889 27 1 2.5104 3.2069 0.1346 28 1 0.3560 2.0906 -1.4585 29 1 1.1664 2.4899 2.6972 30 1 -0.1807 3.9834 1.3282 31 1 4.6680 3.6695 1.6917 32 1 7.3888 1.8146 1.9749 33 1 7.0322 3.1245 3.1261 34 1 8.3524 1.3250 4.2066 35 1 7.0894 0.1445 3.7836 36 1 6.7620 -0.3747 6.2053 37 1 8.0252 0.8056 6.6290 38 1 6.4054 0.9353 7.3561 39 1 4.4598 1.6363 5.9555 40 1 4.8164 0.3263 4.8046 41 1 4.7592 3.3064 4.1467 42 1 3.4965 2.1253 3.7231 43 1 5.3653 -2.0666 -0.0241 44 1 5.9148 -0.6030 -0.8750 45 1 5.8985 -0.6447 0.9043 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_15065288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:10 Heat of formation + Delta-G solvation = -88.469577 kcal Electronic energy + Delta-G solvation = -28618.308778 eV Core-core repulsion = 24855.289463 eV Total energy + Delta-G solvation = -3763.019316 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.40232 -40.08719 -38.62719 -37.26692 -37.11132 -35.98923 -34.22148 -31.77271 -31.62841 -30.89560 -28.12174 -26.58935 -25.92174 -23.69974 -23.30063 -22.36302 -21.19086 -20.64280 -20.11636 -18.96794 -18.63343 -18.04633 -17.56292 -17.03150 -16.24572 -15.96379 -15.88499 -15.64929 -15.30846 -15.26165 -15.16918 -14.60416 -14.53133 -14.47049 -14.23484 -14.19088 -14.06650 -13.69148 -13.42886 -13.38660 -13.23439 -13.17597 -13.11305 -13.03514 -12.74521 -12.69557 -12.67941 -12.34074 -12.10724 -11.97883 -11.88545 -11.70722 -11.54113 -11.33708 -11.13742 -10.57369 -10.50982 -9.97816 -9.48294 -5.01806 -0.86642 -0.47476 0.39271 0.66099 0.78871 1.20292 1.54810 1.87057 1.90693 2.53920 3.17153 3.40694 3.53110 3.56017 3.67703 3.71447 3.80582 3.97912 4.00526 4.04523 4.13335 4.15529 4.20715 4.39706 4.45021 4.48684 4.52246 4.54277 4.59862 4.64563 4.70641 4.77789 4.87675 4.89500 4.94385 4.95908 5.03721 5.08732 5.10361 5.17194 5.20646 5.25036 5.30738 5.38509 5.41759 5.55906 5.85150 6.65722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.187 4.187 3 C -0.089 4.089 4 C -0.085 4.085 5 O -0.546 6.546 6 Si 0.735 3.265 7 C -0.695 4.695 8 S 2.704 3.296 9 O -0.967 6.967 10 O -0.987 6.987 11 N -1.109 6.109 12 C 0.153 3.847 13 H 0.089 0.911 14 C -0.139 4.139 15 C -0.111 4.111 16 C -0.094 4.094 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.064 4.064 22 C -0.115 4.115 23 S 0.208 5.792 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.388 0.612 29 H -0.260 1.260 30 H -0.281 1.281 31 H 0.424 0.576 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -6.709 5.466 9.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.305 4.305 3 C -0.099 4.099 4 C -0.195 4.195 5 O -0.353 6.353 6 Si 0.635 3.365 7 C -0.797 4.797 8 S 2.794 3.206 9 O -0.957 6.957 10 O -0.977 6.977 11 N -0.870 5.870 12 C 0.047 3.953 13 H 0.107 0.893 14 C -0.179 4.179 15 C -0.149 4.149 16 C -0.112 4.112 17 H 0.087 0.913 18 C -0.205 4.205 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.185 4.185 22 C -0.174 4.174 23 S 0.474 5.526 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.237 0.763 29 H -0.185 1.185 30 H -0.208 1.208 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.773 -7.273 5.379 9.801 hybrid contribution 0.630 1.975 -0.281 2.092 sum -3.143 -5.298 5.099 7.996 Atomic orbital electron populations 1.20827 0.84650 1.04080 1.05034 1.24766 1.01997 0.94804 1.08926 1.18537 0.90729 0.96939 1.03734 1.25435 1.03549 0.93266 0.97295 1.86591 1.54823 1.55953 1.37976 0.94077 0.83893 0.84475 0.74012 1.29285 1.11975 1.13320 1.25087 1.01363 0.73552 0.73123 0.72538 1.93563 1.40488 1.77728 1.83949 1.93585 1.80568 1.56944 1.66607 1.55540 1.83637 1.22797 1.25036 1.20981 0.94651 0.93445 0.86216 0.89323 1.22093 0.94764 1.01450 0.99556 1.21577 1.00127 0.99673 0.93570 1.21174 0.94816 1.00197 0.95028 0.91276 1.21822 1.01233 0.99769 0.97703 1.21576 0.95633 1.00006 0.97665 1.21866 0.99584 1.01307 0.93666 1.24855 1.02188 0.95022 0.96436 1.21019 0.87587 1.03013 1.05751 1.84216 0.93351 1.06876 1.68140 0.86914 0.87213 0.88822 0.88461 0.76281 1.18488 1.20809 0.74012 0.91438 0.91078 0.91244 0.91159 0.92361 0.92676 0.92522 0.90900 0.91135 0.90659 0.91452 0.88187 0.88703 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.96 8.73 71.23 0.62 1.58 16 2 C -0.19 0.48 6.02 24.59 0.15 0.63 16 3 C -0.09 -0.29 4.54 -20.92 -0.09 -0.38 16 4 C -0.09 -0.46 2.36 71.24 0.17 -0.30 16 5 O -0.55 -3.68 12.85 -148.98 -1.91 -5.59 16 6 Si 0.74 0.04 28.51 68.60 1.96 2.00 16 7 C -0.69 -3.46 5.53 21.22 0.12 -3.34 16 8 S 2.70 21.92 5.12 -56.49 -0.29 21.63 16 9 O -0.97 -10.00 13.94 -128.00 -1.78 -11.78 16 10 O -0.99 -15.51 15.48 -128.00 -1.98 -17.49 16 11 N -1.11 -2.14 5.47 -169.39 -0.93 -3.07 16 12 C 0.15 -0.13 2.67 44.99 0.12 -0.01 16 13 H 0.09 -0.20 7.08 -2.39 -0.02 -0.21 16 14 C -0.14 0.05 5.53 30.59 0.17 0.22 16 15 C -0.11 0.29 5.20 30.59 0.16 0.45 16 16 C -0.09 0.32 2.72 -10.79 -0.03 0.29 16 17 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 18 C -0.15 0.55 9.19 71.98 0.66 1.21 16 19 C -0.11 0.44 5.20 30.59 0.16 0.60 16 20 C -0.13 0.34 5.45 30.59 0.17 0.50 16 21 C -0.06 -0.09 6.51 24.59 0.16 0.07 16 22 C -0.12 0.08 8.63 71.23 0.62 0.69 16 23 S 0.21 -0.66 23.31 -56.49 -1.32 -1.97 16 24 H 0.11 -1.59 7.65 -2.39 -0.02 -1.60 16 25 H 0.11 -1.56 8.14 -2.39 -0.02 -1.58 16 26 H 0.09 -1.15 3.25 -2.38 -0.01 -1.16 16 27 H 0.10 0.92 5.05 -2.39 -0.01 0.91 16 28 H 0.39 -1.32 7.06 -74.06 -0.52 -1.85 16 29 H -0.26 -0.61 7.11 99.48 0.71 0.09 16 30 H -0.28 -1.88 7.11 99.48 0.71 -1.18 16 31 H 0.42 -0.34 8.84 -96.75 -0.85 -1.19 16 32 H 0.07 0.17 7.64 -2.39 -0.02 0.15 16 33 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 36 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 37 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.09 0.24 6.98 -2.39 -0.02 0.22 16 45 H 0.10 -0.21 7.21 -2.39 -0.02 -0.23 16 Total: 0.00 -21.33 363.81 -3.44 -24.77 By element: Atomic # 1 Polarization: -10.38 SS G_CDS: -0.32 Total: -10.71 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 3.14 Total: 2.23 kcal Atomic # 7 Polarization: -2.14 SS G_CDS: -0.93 Total: -3.07 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -5.68 Total: -34.87 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 1.96 Total: 2.00 kcal Atomic # 16 Polarization: 21.26 SS G_CDS: -1.61 Total: 19.65 kcal Total: -21.33 -3.44 -24.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_15065288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.704 kcal (2) G-P(sol) polarization free energy of solvation -21.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds