Wall clock time and date at job start Mon Mar 8 2021 13:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47263 * 120.00628 * 2 1 3 5 5 C 1.52995 * 109.46998 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47652 * 299.99759 * 5 4 2 7 7 H 1.09003 * 109.47321 * 300.00587 * 6 5 4 8 8 N 1.46499 * 109.47624 * 179.97438 * 6 5 4 9 9 S 1.65597 * 119.99816 * 94.87500 * 8 6 5 10 10 O 1.42102 * 106.40250 * 312.23762 * 9 8 6 11 11 O 1.42097 * 106.40005 * 179.32566 * 9 8 6 12 12 C 1.76199 * 107.21948 * 65.78249 * 9 8 6 13 13 C 1.38206 * 120.00087 * 64.97805 * 12 9 8 14 14 C 1.50708 * 119.99860 * 359.97438 * 13 12 9 15 15 O 1.42899 * 109.47142 * 284.87558 * 14 13 12 16 16 Si 1.86305 * 109.46730 * 164.87805 * 14 13 12 17 17 C 1.38259 * 119.99962 * 180.25559 * 13 12 9 18 18 C 1.38216 * 119.99850 * 359.51273 * 17 13 12 19 19 C 1.38255 * 120.00120 * 0.46501 * 18 17 13 20 20 C 1.38215 * 119.99835 * 359.76819 * 19 18 17 21 21 C 1.53009 * 109.46732 * 59.99835 * 6 5 4 22 22 C 1.52995 * 109.47062 * 300.00076 * 21 6 5 23 23 H 1.09002 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46757 * 299.99826 * 1 2 3 25 25 H 1.08995 * 109.47399 * 59.99606 * 1 2 3 26 26 H 1.08999 * 109.46863 * 299.99481 * 4 2 1 27 27 H 1.09004 * 109.47240 * 59.99344 * 4 2 1 28 28 H 1.09003 * 109.46924 * 179.97438 * 5 4 2 29 29 H 1.09003 * 109.47236 * 60.00398 * 5 4 2 30 30 H 0.96997 * 119.99880 * 274.87783 * 8 6 5 31 31 H 1.08994 * 109.47215 * 44.87675 * 14 13 12 32 32 H 0.96706 * 114.00206 * 300.00405 * 15 14 13 33 33 H 1.48498 * 110.00164 * 58.68325 * 16 14 13 34 34 H 1.48500 * 109.99535 * 180.02562 * 16 14 13 35 35 H 1.08004 * 119.99731 * 179.72297 * 17 13 12 36 36 H 1.07997 * 119.99359 * 180.25547 * 18 17 13 37 37 H 1.07993 * 120.00144 * 179.78816 * 19 18 17 38 38 H 1.07994 * 120.00058 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46603 * 60.00312 * 21 6 5 40 40 H 1.09002 * 109.46579 * 179.97438 * 21 6 5 41 41 H 1.09006 * 109.46718 * 179.97438 * 22 21 6 42 42 H 1.08995 * 109.47767 * 300.00272 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0796 -1.4434 -0.0005 7 1 3.7159 -2.4709 -0.0004 8 7 5.5446 -1.4433 -0.0012 9 16 6.3728 -2.7416 0.6077 10 8 5.7804 -3.0423 1.8639 11 8 7.7538 -2.4460 0.4506 12 6 6.0353 -4.1151 -0.4432 13 6 6.4641 -4.1018 -1.7570 14 6 7.2199 -2.9123 -2.2909 15 8 6.3120 -1.8311 -2.5117 16 14 8.0430 -3.3702 -3.8983 17 6 6.1946 -5.1773 -2.5830 18 6 5.5051 -6.2700 -2.0920 19 6 5.0766 -6.2835 -0.7777 20 6 5.3418 -5.2063 0.0467 21 6 3.5695 -0.7220 -1.2497 22 6 2.0395 -0.7216 -1.2494 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6768 -0.2076 2.1391 27 1 1.6766 -1.7490 1.2491 28 1 3.9334 -1.2354 2.1389 29 1 3.9337 0.3057 1.2487 30 1 6.0293 -0.6828 -0.3582 31 1 7.9773 -2.6089 -1.5683 32 1 5.6093 -2.0306 -3.1455 33 1 7.0237 -3.8161 -4.8820 34 1 8.7922 -2.2057 -4.4350 35 1 6.5258 -5.1649 -3.6109 36 1 5.2983 -7.1118 -2.7362 37 1 4.5349 -7.1358 -0.3950 38 1 5.0074 -5.2170 1.0736 39 1 3.9332 0.3056 -1.2498 40 1 3.9329 -1.2358 -2.1397 41 1 1.6762 -0.2072 -2.1391 42 1 1.6758 -1.7490 -1.2492 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_4279158_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:30 Heat of formation + Delta-G solvation = -87.967544 kcal Electronic energy + Delta-G solvation = -25895.166836 eV Core-core repulsion = 22354.092282 eV Total energy + Delta-G solvation = -3541.074554 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 6.30 seconds Orbital eigenvalues (eV) -40.79311 -40.03790 -38.40205 -37.63479 -36.76523 -35.81048 -32.92634 -32.46742 -31.76672 -31.50221 -27.04239 -26.55440 -24.48862 -23.69142 -22.90839 -22.27076 -21.06074 -20.38765 -19.21753 -18.41440 -18.10353 -17.56175 -16.89463 -16.75094 -16.10218 -15.93424 -15.82870 -15.38370 -15.28003 -15.19845 -15.04717 -14.53114 -14.23044 -14.17025 -13.87213 -13.58403 -13.27793 -13.22503 -13.12004 -12.96374 -12.90403 -12.81942 -12.71007 -12.35646 -12.11459 -12.00489 -11.96310 -11.57306 -11.49051 -11.31878 -11.09668 -10.76840 -10.53021 -10.29731 -10.13646 -5.04563 -0.56690 -0.29450 0.04799 1.13403 1.45762 1.84716 1.99709 2.31120 2.75629 3.22453 3.28510 3.47208 3.62295 3.69644 3.72932 3.78752 3.84343 4.00963 4.10258 4.14114 4.18160 4.28794 4.43262 4.45631 4.49209 4.53117 4.53595 4.60217 4.71308 4.74673 4.85703 4.88684 4.92785 5.02222 5.03671 5.08630 5.16744 5.18586 5.21222 5.30205 5.34954 5.41764 5.52784 5.64044 6.11291 6.20669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.140 4.140 6 C 0.161 3.839 7 H 0.078 0.922 8 N -1.095 6.095 9 S 2.696 3.304 10 O -0.958 6.958 11 O -0.958 6.958 12 C -0.658 4.658 13 C -0.011 4.011 14 C -0.133 4.133 15 O -0.515 6.515 16 Si 0.705 3.295 17 C -0.145 4.145 18 C -0.058 4.058 19 C -0.134 4.134 20 C -0.022 4.022 21 C -0.119 4.119 22 C -0.114 4.114 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.423 0.577 31 H 0.153 0.847 32 H 0.374 0.626 33 H -0.258 1.258 34 H -0.250 1.250 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -2.279 -3.755 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.179 4.179 6 C 0.054 3.946 7 H 0.096 0.904 8 N -0.855 5.855 9 S 2.785 3.215 10 O -0.948 6.948 11 O -0.948 6.948 12 C -0.744 4.744 13 C -0.012 4.012 14 C -0.242 4.242 15 O -0.322 6.322 16 Si 0.606 3.394 17 C -0.164 4.164 18 C -0.076 4.076 19 C -0.153 4.153 20 C -0.041 4.041 21 C -0.158 4.158 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.259 0.741 31 H 0.170 0.830 32 H 0.222 0.778 33 H -0.183 1.183 34 H -0.175 1.175 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.911 -1.985 -3.376 4.358 hybrid contribution -1.272 0.166 -0.874 1.552 sum -3.184 -1.819 -4.250 5.613 Atomic orbital electron populations 1.21838 0.95118 1.01885 1.01807 1.21193 0.95583 0.99812 0.94795 0.91025 1.21578 0.94715 1.00990 0.97844 1.22108 0.95864 1.01707 0.98249 1.20714 0.77999 1.00041 0.95824 0.90364 1.55384 1.15163 1.34203 1.80785 1.01854 0.73171 0.73005 0.73484 1.93590 1.78368 1.84553 1.38299 1.93550 1.31065 1.83825 1.86407 1.30846 1.13839 1.19537 1.10167 1.19888 0.93657 0.95617 0.92057 1.25791 0.96687 0.87793 1.13902 1.86681 1.42796 1.36937 1.65800 0.94297 0.84517 0.86350 0.74274 1.21336 1.00581 0.94201 1.00250 1.21486 0.93260 0.97255 0.95563 1.21405 1.00782 0.98975 0.94116 1.21098 0.91549 0.91216 1.00248 1.21806 0.95583 1.01384 0.96979 1.21608 0.94691 1.00974 0.98002 0.92675 0.92576 0.92697 0.91412 0.91744 0.90342 0.91190 0.74071 0.82956 0.77772 1.18336 1.17485 0.84596 0.84721 0.84619 0.83670 0.91027 0.91215 0.91521 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 9.19 37.16 0.34 0.52 16 2 C -0.10 0.12 2.72 -90.62 -0.25 -0.13 16 3 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 4 C -0.11 0.08 5.20 -26.74 -0.14 -0.06 16 5 C -0.14 0.00 5.53 -26.74 -0.15 -0.14 16 6 C 0.16 -0.12 2.65 -67.93 -0.18 -0.30 16 7 H 0.08 -0.07 7.90 -51.93 -0.41 -0.48 16 8 N -1.10 0.12 3.79 -4.89 -0.02 0.11 16 9 S 2.70 6.50 4.99 -107.50 -0.54 5.96 16 10 O -0.96 -4.59 16.20 -57.17 -0.93 -5.52 16 11 O -0.96 -4.64 15.49 -57.17 -0.89 -5.52 16 12 C -0.66 -0.71 5.80 -39.58 -0.23 -0.94 16 13 C -0.01 0.00 5.25 -104.62 -0.55 -0.55 16 14 C -0.13 0.04 2.02 36.01 0.07 0.12 16 15 O -0.52 0.71 9.88 -35.23 -0.35 0.37 16 16 Si 0.71 -0.97 30.26 -169.99 -5.14 -6.12 16 17 C -0.15 0.17 8.66 -39.58 -0.34 -0.17 16 18 C -0.06 0.10 10.05 -39.58 -0.40 -0.30 16 19 C -0.13 0.15 10.05 -39.58 -0.40 -0.25 16 20 C -0.02 -0.01 9.55 -39.58 -0.38 -0.39 16 21 C -0.12 0.24 5.45 -26.73 -0.15 0.09 16 22 C -0.11 0.21 5.20 -26.73 -0.14 0.07 16 23 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 27 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.08 0.12 7.63 -51.93 -0.40 -0.28 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.42 -0.42 8.27 -34.47 -0.28 -0.71 16 31 H 0.15 0.15 5.38 -51.93 -0.28 -0.13 16 32 H 0.37 -1.49 7.86 45.56 0.36 -1.13 16 33 H -0.26 0.14 6.67 56.52 0.38 0.52 16 34 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 35 H 0.14 -0.37 4.87 -52.48 -0.26 -0.63 16 36 H 0.13 -0.54 8.06 -52.49 -0.42 -0.96 16 37 H 0.14 -0.43 8.06 -52.49 -0.42 -0.85 16 38 H 0.15 -0.03 7.33 -52.49 -0.38 -0.41 16 39 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.07 -0.20 6.57 -51.93 -0.34 -0.54 16 41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 42 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 LS Contribution 335.05 15.07 5.05 5.05 Total: 0.00 -6.73 335.05 -11.98 -18.70 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: -6.29 Total: -10.59 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.88 Total: -2.44 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -0.02 Total: 0.11 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -2.16 Total: -10.67 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.14 Total: -6.12 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -0.54 Total: 5.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -6.73 -11.98 -18.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.264 kcal (2) G-P(sol) polarization free energy of solvation -6.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.30 seconds