Wall clock time and date at job start Mon Mar 8 2021 13:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47263 * 120.00628 * 2 1 3 5 5 C 1.52995 * 109.46998 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47652 * 299.99759 * 5 4 2 7 7 H 1.09003 * 109.47321 * 300.00587 * 6 5 4 8 8 N 1.46499 * 109.47624 * 179.97438 * 6 5 4 9 9 S 1.65597 * 119.99816 * 94.87500 * 8 6 5 10 10 O 1.42102 * 106.40250 * 312.23762 * 9 8 6 11 11 O 1.42097 * 106.40005 * 179.32566 * 9 8 6 12 12 C 1.76199 * 107.21948 * 65.78249 * 9 8 6 13 13 C 1.38206 * 120.00087 * 64.97805 * 12 9 8 14 14 C 1.50708 * 119.99860 * 359.97438 * 13 12 9 15 15 O 1.42899 * 109.47142 * 284.87558 * 14 13 12 16 16 Si 1.86305 * 109.46730 * 164.87805 * 14 13 12 17 17 C 1.38259 * 119.99962 * 180.25559 * 13 12 9 18 18 C 1.38216 * 119.99850 * 359.51273 * 17 13 12 19 19 C 1.38255 * 120.00120 * 0.46501 * 18 17 13 20 20 C 1.38215 * 119.99835 * 359.76819 * 19 18 17 21 21 C 1.53009 * 109.46732 * 59.99835 * 6 5 4 22 22 C 1.52995 * 109.47062 * 300.00076 * 21 6 5 23 23 H 1.09002 * 109.47024 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46757 * 299.99826 * 1 2 3 25 25 H 1.08995 * 109.47399 * 59.99606 * 1 2 3 26 26 H 1.08999 * 109.46863 * 299.99481 * 4 2 1 27 27 H 1.09004 * 109.47240 * 59.99344 * 4 2 1 28 28 H 1.09003 * 109.46924 * 179.97438 * 5 4 2 29 29 H 1.09003 * 109.47236 * 60.00398 * 5 4 2 30 30 H 0.96997 * 119.99880 * 274.87783 * 8 6 5 31 31 H 1.08994 * 109.47215 * 44.87675 * 14 13 12 32 32 H 0.96706 * 114.00206 * 300.00405 * 15 14 13 33 33 H 1.48498 * 110.00164 * 58.68325 * 16 14 13 34 34 H 1.48500 * 109.99535 * 180.02562 * 16 14 13 35 35 H 1.08004 * 119.99731 * 179.72297 * 17 13 12 36 36 H 1.07997 * 119.99359 * 180.25547 * 18 17 13 37 37 H 1.07993 * 120.00144 * 179.78816 * 19 18 17 38 38 H 1.07994 * 120.00058 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46603 * 60.00312 * 21 6 5 40 40 H 1.09002 * 109.46579 * 179.97438 * 21 6 5 41 41 H 1.09006 * 109.46718 * 179.97438 * 22 21 6 42 42 H 1.08995 * 109.47767 * 300.00272 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5700 -0.7219 1.2487 6 6 4.0796 -1.4434 -0.0005 7 1 3.7159 -2.4709 -0.0004 8 7 5.5446 -1.4433 -0.0012 9 16 6.3728 -2.7416 0.6077 10 8 5.7804 -3.0423 1.8639 11 8 7.7538 -2.4460 0.4506 12 6 6.0353 -4.1151 -0.4432 13 6 6.4641 -4.1018 -1.7570 14 6 7.2199 -2.9123 -2.2909 15 8 6.3120 -1.8311 -2.5117 16 14 8.0430 -3.3702 -3.8983 17 6 6.1946 -5.1773 -2.5830 18 6 5.5051 -6.2700 -2.0920 19 6 5.0766 -6.2835 -0.7777 20 6 5.3418 -5.2063 0.0467 21 6 3.5695 -0.7220 -1.2497 22 6 2.0395 -0.7216 -1.2494 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6768 -0.2076 2.1391 27 1 1.6766 -1.7490 1.2491 28 1 3.9334 -1.2354 2.1389 29 1 3.9337 0.3057 1.2487 30 1 6.0293 -0.6828 -0.3582 31 1 7.9773 -2.6089 -1.5683 32 1 5.6093 -2.0306 -3.1455 33 1 7.0237 -3.8161 -4.8820 34 1 8.7922 -2.2057 -4.4350 35 1 6.5258 -5.1649 -3.6109 36 1 5.2983 -7.1118 -2.7362 37 1 4.5349 -7.1358 -0.3950 38 1 5.0074 -5.2170 1.0736 39 1 3.9332 0.3056 -1.2498 40 1 3.9329 -1.2358 -2.1397 41 1 1.6762 -0.2072 -2.1391 42 1 1.6758 -1.7490 -1.2492 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_4279158_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:26 Heat of formation + Delta-G solvation = -85.437210 kcal Electronic energy + Delta-G solvation = -25895.057113 eV Core-core repulsion = 22354.092282 eV Total energy + Delta-G solvation = -3540.964831 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.71493 -39.99277 -38.57032 -37.63022 -37.04746 -35.80121 -32.84108 -32.39683 -31.69654 -31.48157 -26.97236 -26.49967 -24.43287 -23.62470 -22.84505 -22.22764 -21.04627 -20.44942 -19.22047 -18.51833 -18.09480 -17.58646 -16.84178 -16.71833 -16.14075 -15.87940 -15.78217 -15.41973 -15.19881 -15.15083 -14.98588 -14.48243 -14.21402 -14.15724 -13.84713 -13.54142 -13.32946 -13.31361 -13.16378 -13.10194 -12.99015 -12.83970 -12.68350 -12.35443 -12.05595 -11.97489 -11.89278 -11.51833 -11.47352 -11.23413 -11.06829 -10.69483 -10.45871 -10.29699 -10.06074 -4.93116 -0.67870 -0.28913 0.13210 1.21591 1.53001 1.89779 1.93669 2.36900 2.64371 3.27737 3.33124 3.45994 3.67654 3.76851 3.79851 3.87198 3.99594 4.07998 4.19795 4.23901 4.26060 4.33575 4.50058 4.50868 4.53682 4.59878 4.61143 4.66585 4.80408 4.83109 4.92331 4.98264 5.00112 5.09077 5.16699 5.19325 5.23147 5.25902 5.29832 5.36913 5.41162 5.47543 5.59926 5.75727 6.13463 6.44445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.141 4.141 6 C 0.161 3.839 7 H 0.080 0.920 8 N -1.087 6.087 9 S 2.700 3.300 10 O -0.991 6.991 11 O -0.990 6.990 12 C -0.666 4.666 13 C -0.016 4.016 14 C -0.143 4.143 15 O -0.521 6.521 16 Si 0.773 3.227 17 C -0.147 4.147 18 C -0.053 4.053 19 C -0.136 4.136 20 C -0.038 4.038 21 C -0.113 4.113 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.427 0.573 31 H 0.135 0.865 32 H 0.387 0.613 33 H -0.257 1.257 34 H -0.297 1.297 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -3.372 -5.517 7.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.181 4.181 6 C 0.054 3.946 7 H 0.098 0.902 8 N -0.848 5.848 9 S 2.793 3.207 10 O -0.980 6.980 11 O -0.980 6.980 12 C -0.755 4.755 13 C -0.018 4.018 14 C -0.251 4.251 15 O -0.330 6.330 16 Si 0.675 3.325 17 C -0.165 4.165 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.058 4.058 21 C -0.152 4.152 22 C -0.150 4.150 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.237 0.763 33 H -0.182 1.182 34 H -0.225 1.225 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.795 -3.064 -5.102 6.575 hybrid contribution -1.020 0.523 -0.326 1.192 sum -3.816 -2.541 -5.429 7.105 Atomic orbital electron populations 1.21829 0.94994 1.01925 1.01826 1.21173 0.95644 0.99661 0.94730 0.91229 1.21562 0.94044 1.01095 0.98260 1.22106 0.96508 1.01577 0.97891 1.20798 0.77333 1.00296 0.96180 0.90202 1.55162 1.15418 1.33684 1.80550 1.01333 0.72477 0.73576 0.73357 1.93544 1.78664 1.85212 1.40630 1.93507 1.33023 1.84568 1.86891 1.30509 1.15455 1.19086 1.10489 1.19970 0.93790 0.96239 0.91776 1.25914 0.96761 0.87982 1.14470 1.86653 1.43197 1.36719 1.66422 0.93444 0.82347 0.84434 0.72225 1.21578 1.00264 0.93751 1.00886 1.21879 0.91909 0.97752 0.95550 1.21699 1.00523 0.98918 0.94326 1.21231 0.92112 0.91822 1.00621 1.21781 0.95556 1.01327 0.96574 1.21596 0.94539 1.01064 0.97823 0.92614 0.92866 0.92380 0.91659 0.91755 0.92327 0.91088 0.73552 0.84781 0.76304 1.18228 1.22508 0.82759 0.81781 0.82522 0.84040 0.90989 0.89946 0.90843 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 9.19 71.98 0.66 1.05 16 2 C -0.09 0.23 2.72 -10.79 -0.03 0.20 16 3 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 4 C -0.11 0.07 5.20 30.59 0.16 0.23 16 5 C -0.14 -0.19 5.53 30.59 0.17 -0.02 16 6 C 0.16 -0.12 2.65 44.99 0.12 0.00 16 7 H 0.08 -0.08 7.90 -2.39 -0.02 -0.10 16 8 N -1.09 -1.29 3.79 -169.38 -0.64 -1.93 16 9 S 2.70 18.51 4.99 -56.49 -0.28 18.23 16 10 O -0.99 -12.07 16.20 -128.00 -2.07 -14.14 16 11 O -0.99 -12.00 15.49 -128.00 -1.98 -13.98 16 12 C -0.67 -1.97 5.80 22.27 0.13 -1.84 16 13 C -0.02 0.00 5.25 -19.86 -0.10 -0.10 16 14 C -0.14 0.05 2.02 71.24 0.14 0.19 16 15 O -0.52 1.40 9.88 -148.98 -1.47 -0.07 16 16 Si 0.77 -2.48 30.26 68.60 2.08 -0.40 16 17 C -0.15 0.60 8.66 22.27 0.19 0.79 16 18 C -0.05 0.30 10.05 22.27 0.22 0.52 16 19 C -0.14 0.47 10.05 22.27 0.22 0.69 16 20 C -0.04 -0.05 9.55 22.27 0.21 0.16 16 21 C -0.11 0.49 5.45 30.60 0.17 0.66 16 22 C -0.11 0.48 5.20 30.59 0.16 0.64 16 23 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 28 H 0.06 0.32 7.63 -2.39 -0.02 0.30 16 29 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.43 -0.26 8.27 -96.75 -0.80 -1.06 16 31 H 0.13 0.48 5.38 -2.39 -0.01 0.47 16 32 H 0.39 -3.42 7.86 -74.05 -0.58 -4.00 16 33 H -0.26 0.84 6.67 99.48 0.66 1.51 16 34 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16 35 H 0.16 -1.25 4.87 -2.91 -0.01 -1.26 16 36 H 0.16 -1.90 8.06 -2.91 -0.02 -1.93 16 37 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 38 H 0.14 0.16 7.33 -2.91 -0.02 0.14 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.08 -0.55 6.57 -2.39 -0.02 -0.56 16 41 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 42 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: 0.00 -16.97 335.05 -2.30 -19.27 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: -0.35 Total: -10.14 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 2.43 Total: 3.17 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -0.64 Total: -1.93 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -5.53 Total: -28.20 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.08 Total: -0.40 kcal Atomic # 16 Polarization: 18.51 SS G_CDS: -0.28 Total: 18.23 kcal Total: -16.97 -2.30 -19.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_4279158_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.170 kcal (2) G-P(sol) polarization free energy of solvation -16.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds