Wall clock time and date at job start Mon Mar 8 2021 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 S 1.52205 * 114.00003 * 90.00387 * 14 13 6 16 16 O 1.42098 * 104.27891 * 191.07008 * 15 14 13 17 17 O 1.42101 * 104.27407 * 318.93115 * 15 14 13 18 18 C 1.81407 * 104.44877 * 74.99875 * 15 14 13 19 19 C 1.52998 * 109.46936 * 180.02562 * 18 15 14 20 20 C 1.52999 * 109.46895 * 180.02562 * 19 18 15 21 21 Si 1.86304 * 109.47023 * 180.02562 * 20 19 18 22 22 C 1.86296 * 109.47134 * 59.99568 * 21 20 19 23 23 C 1.86301 * 109.47035 * 179.97438 * 21 20 19 24 24 C 1.86308 * 109.46811 * 299.99500 * 21 20 19 25 25 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 26 26 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 27 27 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 28 28 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 31 31 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 32 32 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 33 33 H 1.09001 * 109.46977 * 300.00009 * 18 15 14 34 34 H 1.08999 * 109.47013 * 60.00366 * 18 15 14 35 35 H 1.08997 * 109.47172 * 300.00204 * 19 18 15 36 36 H 1.08999 * 109.47142 * 60.00235 * 19 18 15 37 37 H 1.09001 * 109.46826 * 299.99681 * 20 19 18 38 38 H 1.08999 * 109.47206 * 60.00064 * 20 19 18 39 39 H 1.09000 * 109.47091 * 60.00889 * 22 21 20 40 40 H 1.09007 * 109.46634 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47350 * 299.99839 * 22 21 20 42 42 H 1.08999 * 109.47128 * 59.99839 * 23 21 20 43 43 H 1.09000 * 109.47162 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47272 * 299.99755 * 23 21 20 45 45 H 1.09002 * 109.46499 * 60.00428 * 24 21 20 46 46 H 1.09000 * 109.46945 * 179.97438 * 24 21 20 47 47 H 1.08999 * 109.47479 * 300.00239 * 24 21 20 48 48 H 1.07995 * 120.05190 * 179.97438 * 25 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 16 6.0317 2.6289 1.3913 16 8 7.3922 2.9691 1.1623 17 8 5.1768 3.4873 2.1341 18 6 5.8943 0.9215 1.9886 19 6 6.4879 0.8241 3.3953 20 6 6.3726 -0.6161 3.8988 21 14 7.0948 -0.7347 5.6121 22 6 6.1633 0.4006 6.7585 23 6 6.9536 -2.4881 6.2255 24 6 8.8889 -0.2349 5.5656 25 6 3.4305 1.2840 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2123 2.3184 0.0005 30 1 1.3281 4.5115 0.0113 31 1 4.7897 5.0225 0.7288 32 1 3.8355 5.3143 -1.9976 33 1 4.8444 0.6298 2.0166 34 1 6.4383 0.2569 1.3174 35 1 7.5377 1.1160 3.3677 36 1 5.9435 1.4886 4.0663 37 1 5.3229 -0.9084 3.9264 38 1 6.9172 -1.2803 3.2278 39 1 5.1137 0.1081 6.7858 40 1 6.5862 0.3315 7.7609 41 1 6.2455 1.4266 6.3998 42 1 7.4983 -3.1526 5.5548 43 1 7.3766 -2.5576 7.2277 44 1 5.9039 -2.7802 6.2528 45 1 8.9710 0.7912 5.2069 46 1 9.3114 -0.3038 6.5681 47 1 9.4339 -0.8990 4.8949 48 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_575378_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:06:54 Heat of formation + Delta-G solvation = -190.470239 kcal Electronic energy + Delta-G solvation = -29814.034140 eV Core-core repulsion = 25700.133300 eV Total energy + Delta-G solvation = -4113.900840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52997 -40.77677 -38.73962 -38.18979 -37.29537 -37.05860 -35.99025 -32.66424 -31.52182 -29.75418 -28.85745 -28.52236 -28.44484 -28.34717 -26.39433 -24.84168 -23.15021 -22.93792 -21.51765 -19.89636 -18.98285 -18.85521 -18.21879 -17.97934 -17.35620 -17.01512 -16.93787 -16.56266 -16.03711 -15.88774 -15.69631 -15.22783 -14.97441 -14.86584 -14.36107 -14.26200 -14.19544 -14.13788 -14.02272 -13.81938 -13.70577 -13.61966 -13.45397 -13.37448 -13.28478 -13.22358 -13.16867 -13.12250 -13.10475 -13.07606 -12.48577 -12.32824 -12.13342 -12.04497 -12.00536 -11.87129 -11.67390 -10.86912 -10.83452 -10.59599 -10.42826 -10.30671 -9.53390 -1.09620 -0.16475 -0.06115 0.95820 1.11473 1.36887 1.54425 1.69302 1.81217 1.82741 1.92420 1.95651 2.18735 2.53258 2.61518 2.89136 3.32208 3.40192 3.44838 3.55989 3.57757 3.67433 3.72866 3.93709 3.99040 4.00013 4.00774 4.09533 4.23820 4.37862 4.50116 4.51610 4.61140 4.68017 4.68312 4.70388 4.72472 4.72777 4.73433 4.74969 4.76475 4.88511 4.88918 4.96180 5.23265 5.33284 5.43749 5.51776 5.54144 6.00335 6.57460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.154 3.846 4 C -0.184 4.184 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.097 4.097 8 O -0.530 6.530 9 Si 0.954 3.046 10 H -0.241 1.241 11 H -0.246 1.246 12 H -0.249 1.249 13 C 0.134 3.866 14 O -0.652 6.652 15 S 2.581 3.419 16 O -0.918 6.918 17 O -0.947 6.947 18 C -0.648 4.648 19 C -0.101 4.101 20 C -0.406 4.406 21 Si 1.002 2.998 22 C -0.453 4.453 23 C -0.449 4.449 24 C -0.454 4.454 25 C -0.168 4.168 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.126 0.874 32 H 0.375 0.625 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 -3.724 0.800 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.107 3.893 4 C -0.203 4.203 5 C -0.087 4.087 6 C -0.128 4.128 7 C -0.207 4.207 8 O -0.335 6.335 9 Si 0.775 3.225 10 H -0.163 1.163 11 H -0.169 1.169 12 H -0.173 1.173 13 C 0.092 3.908 14 O -0.610 6.610 15 S 2.678 3.322 16 O -0.916 6.916 17 O -0.945 6.945 18 C -0.776 4.776 19 C -0.140 4.140 20 C -0.492 4.492 21 Si 1.199 2.801 22 C -0.560 4.560 23 C -0.556 4.556 24 C -0.561 4.561 25 C -0.189 4.189 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.222 0.778 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.178 -2.551 1.126 6.778 hybrid contribution -0.352 -1.170 -0.411 1.289 sum -6.529 -3.721 0.715 7.549 Atomic orbital electron populations 1.23229 0.77125 1.04920 1.01936 1.86109 1.22317 1.25771 1.88012 1.18543 0.91081 0.84930 0.94700 1.21443 1.01153 0.91603 1.06141 1.20888 0.92685 0.98465 0.96635 1.20368 0.93793 0.95596 1.03090 1.25275 1.07723 0.97980 0.89737 1.86610 1.37524 1.93538 1.15803 0.85653 0.76952 0.78405 0.81527 1.16347 1.16919 1.17341 1.17311 0.76576 0.92975 1.03933 1.85743 1.26033 1.91959 1.57295 1.05959 0.75069 0.77921 0.73300 1.93672 1.33686 1.82038 1.82240 1.93627 1.66438 1.62413 1.72052 1.30946 1.11681 1.25693 1.09261 1.20980 1.01685 0.99835 0.91480 1.26171 1.07852 0.97080 1.18063 0.79331 0.67262 0.67369 0.66183 1.26171 1.08544 1.10574 1.10749 1.26101 1.04515 1.18746 1.06287 1.26177 1.19500 1.05795 1.04632 1.20443 0.93032 0.97224 1.08170 0.91971 0.92006 0.87474 0.83675 0.83937 0.85685 0.77843 0.84473 0.84154 0.89909 0.89855 0.90028 0.89974 0.91181 0.91106 0.91091 0.91243 0.91148 0.91268 0.91081 0.91104 0.91125 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 101.05 0.99 0.90 16 2 O -0.31 0.21 10.49 -19.42 -0.20 0.00 16 3 C 0.15 -0.03 6.68 -39.24 -0.26 -0.29 16 4 C -0.18 0.25 9.04 -39.41 -0.36 -0.11 16 5 C -0.07 0.03 8.65 -39.63 -0.34 -0.31 16 6 C -0.13 -0.24 4.68 -104.45 -0.49 -0.73 16 7 C -0.10 -0.25 2.23 36.00 0.08 -0.16 16 8 O -0.53 -1.32 12.88 -35.23 -0.45 -1.78 16 9 Si 0.95 0.51 25.48 -169.99 -4.33 -3.82 16 10 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 11 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 12 H -0.25 0.31 6.74 56.52 0.38 0.69 16 13 C 0.13 0.30 4.78 -39.24 -0.19 0.11 16 14 O -0.65 -2.10 9.47 -51.74 -0.49 -2.59 16 15 S 2.58 7.35 4.93 -107.50 -0.53 6.82 16 16 O -0.92 -5.72 18.09 -67.04 -1.21 -6.93 16 17 O -0.95 -3.76 14.24 -67.04 -0.95 -4.72 16 18 C -0.65 0.62 5.46 37.16 0.20 0.82 16 19 C -0.10 0.10 4.59 -26.73 -0.12 -0.02 16 20 C -0.41 0.91 4.45 37.16 0.17 1.07 16 21 Si 1.00 -2.77 12.19 -169.99 -2.07 -4.84 16 22 C -0.45 0.69 8.65 101.05 0.87 1.56 16 23 C -0.45 0.77 8.65 101.05 0.87 1.64 16 24 C -0.45 0.60 8.65 101.05 0.87 1.47 16 25 C -0.17 -0.06 8.40 -39.29 -0.33 -0.39 16 26 H 0.06 -0.31 7.66 -51.93 -0.40 -0.71 16 27 H 0.06 -0.30 7.66 -51.93 -0.40 -0.70 16 28 H 0.11 -0.56 8.14 -51.93 -0.42 -0.98 16 29 H 0.15 -0.60 6.29 -52.48 -0.33 -0.93 16 30 H 0.14 -0.35 4.87 -52.49 -0.26 -0.60 16 31 H 0.13 0.48 5.42 -51.93 -0.28 0.20 16 32 H 0.37 -0.69 8.70 45.56 0.40 -0.30 16 33 H 0.14 -0.36 6.60 -51.92 -0.34 -0.70 16 34 H 0.14 -0.39 8.14 -51.92 -0.42 -0.81 16 35 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 36 H 0.08 -0.16 7.79 -51.93 -0.40 -0.57 16 37 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 38 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 45 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 46 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 47 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 48 H 0.15 -0.26 7.49 -52.49 -0.39 -0.66 16 LS Contribution 397.27 15.07 5.99 5.99 Total: 0.00 -9.35 397.27 -9.29 -18.65 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: -7.00 Total: -12.34 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 1.97 Total: 5.57 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -3.31 Total: -16.01 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: -6.40 Total: -8.67 kcal Atomic # 16 Polarization: 7.35 SS G_CDS: -0.53 Total: 6.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -9.35 -9.29 -18.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_575378_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.824 kcal (2) G-P(sol) polarization free energy of solvation -9.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds