Wall clock time and date at job start Mon Mar 8 2021 12:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.46840 * 2 1 4 4 C 1.34228 * 116.99588 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00311 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99522 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47022 * 299.99963 * 6 4 3 8 8 C 1.52999 * 109.47141 * 60.00309 * 6 4 3 9 9 C 1.52991 * 109.47071 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47473 * 300.00330 * 9 8 6 11 11 F 1.39902 * 109.47138 * 299.99765 * 10 9 8 12 12 C 1.53006 * 109.47134 * 179.97438 * 10 9 8 13 13 S 1.81403 * 109.47016 * 60.00166 * 12 10 9 14 14 O 1.42095 * 110.54448 * 62.03548 * 13 12 10 15 15 O 1.42103 * 110.53997 * 285.28172 * 13 12 10 16 16 O 1.52202 * 104.44595 * 173.66276 * 13 12 10 17 17 C 1.35895 * 114.00118 * 74.09563 * 16 13 12 18 18 C 1.38756 * 120.02660 * 95.65570 * 17 16 13 19 19 C 1.50699 * 119.97068 * 0.02562 * 18 17 16 20 20 O 1.42898 * 109.47267 * 75.57332 * 19 18 17 21 21 Si 1.86307 * 109.46904 * 195.57210 * 19 18 17 22 22 C 1.38198 * 120.05231 * 180.02562 * 18 17 16 23 23 C 1.38152 * 120.11244 * 0.02562 * 22 18 17 24 24 C 1.38791 * 120.05332 * 359.97438 * 23 22 18 25 25 O 1.35895 * 120.02830 * 180.02562 * 24 23 22 26 26 C 1.42909 * 116.99834 * 359.97438 * 25 24 23 27 27 C 1.38618 * 119.94584 * 0.02562 * 24 23 22 28 28 C 1.52999 * 109.47241 * 59.99774 * 10 9 8 29 29 C 1.52996 * 109.46817 * 300.00234 * 28 10 9 30 30 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47252 * 299.99370 * 1 2 3 32 32 H 1.09007 * 109.47392 * 59.99942 * 1 2 3 33 33 H 1.09001 * 109.46855 * 240.00381 * 2 1 3 34 34 H 1.08993 * 109.46877 * 120.00238 * 2 1 3 35 35 H 1.09004 * 109.47058 * 299.99959 * 8 6 4 36 36 H 1.09003 * 109.46740 * 59.99678 * 8 6 4 37 37 H 1.09000 * 109.47462 * 180.02562 * 9 8 6 38 38 H 1.09003 * 109.47228 * 60.00433 * 9 8 6 39 39 H 1.08992 * 109.46873 * 299.99681 * 12 10 9 40 40 H 1.08999 * 109.46777 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.46957 * 315.56883 * 19 18 17 42 42 H 0.96700 * 114.00089 * 66.07637 * 20 19 18 43 43 H 1.48503 * 109.99911 * 58.67839 * 21 19 18 44 44 H 1.48495 * 109.99899 * 179.97438 * 21 19 18 45 45 H 1.08004 * 119.94126 * 180.02562 * 22 18 17 46 46 H 1.08001 * 119.97380 * 180.02562 * 23 22 18 47 47 H 1.08990 * 109.46993 * 299.99746 * 26 25 24 48 48 H 1.09000 * 109.46730 * 59.99993 * 26 25 24 49 49 H 1.08998 * 109.46633 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.05057 * 180.27637 * 27 24 23 51 51 H 1.09003 * 109.46740 * 60.00337 * 28 10 9 52 52 H 1.09004 * 109.47058 * 180.02562 * 28 10 9 53 53 H 1.09005 * 109.46877 * 179.97438 * 29 28 10 54 54 H 1.08994 * 109.47488 * 299.99445 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5850 3.4699 -0.8888 8 6 3.4486 3.6840 1.2505 9 6 4.0338 5.0976 1.2514 10 6 5.5617 5.0171 1.2521 11 9 5.9922 4.3335 2.3943 12 6 6.1469 6.4309 1.2524 13 16 5.5874 7.3166 2.7333 14 8 6.0526 6.6670 3.9084 15 8 4.2262 7.7020 2.5993 16 8 6.3544 8.6308 2.7022 17 6 5.9040 9.5117 1.7706 18 6 4.9994 10.5005 2.1301 19 6 4.5168 10.5976 3.5544 20 8 5.5441 11.1678 4.3676 21 14 2.9994 11.6764 3.6237 22 6 4.5406 11.3963 1.1830 23 6 4.9808 11.3096 -0.1237 24 6 5.8856 10.3223 -0.4882 25 8 6.3186 10.2377 -1.7735 26 6 5.8006 11.1974 -2.6971 27 6 6.3473 9.4226 0.4599 28 6 6.0337 4.2706 0.0028 29 6 5.4485 2.8570 0.0019 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.3601 3.7410 1.2501 36 1 3.7843 3.1515 2.1404 37 1 3.6980 5.6294 2.1417 38 1 3.6985 5.6303 0.3615 39 1 5.8115 6.9630 0.3623 40 1 7.2354 6.3735 1.2524 41 1 4.2717 9.6018 3.9236 42 1 5.7481 12.0889 4.1553 43 1 1.9343 11.1112 2.7569 44 1 2.5132 11.7797 5.0230 45 1 3.8368 12.1655 1.4649 46 1 4.6211 12.0110 -0.8619 47 1 4.7158 11.1049 -2.7469 48 1 6.0648 12.2012 -2.3644 49 1 6.2266 11.0182 -3.6843 50 1 7.0548 8.6565 0.1790 51 1 5.6983 4.8033 -0.8871 52 1 7.1222 4.2129 0.0035 53 1 5.7844 2.3253 -0.8884 54 1 5.7839 2.3244 0.8917 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_575378_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:59:47 Heat of formation + Delta-G solvation = -276.510245 kcal Electronic energy + Delta-G solvation = -43398.868810 eV Core-core repulsion = 37731.560219 eV Total energy + Delta-G solvation = -5667.308591 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -49.15920 -42.59475 -41.82409 -40.68512 -39.17148 -38.76502 -38.54421 -37.71839 -37.54529 -37.19103 -34.33360 -32.71947 -32.49016 -32.14904 -31.47868 -29.17839 -28.51081 -26.36341 -25.28746 -24.70814 -24.19170 -23.54749 -23.09552 -22.04181 -21.61296 -20.91803 -19.96818 -19.26872 -19.03136 -18.82094 -18.29018 -18.01527 -17.83570 -17.74468 -17.40276 -17.19543 -16.87804 -16.77958 -16.67398 -16.34229 -16.18442 -15.92805 -15.55602 -15.35809 -15.12116 -15.03220 -14.93028 -14.58181 -14.54388 -14.40731 -14.14759 -14.03613 -13.86708 -13.75632 -13.70793 -13.56217 -13.52545 -13.39158 -13.28112 -13.25720 -13.21582 -13.17284 -12.95615 -12.66198 -12.52547 -12.31433 -12.26014 -12.16821 -12.00061 -11.98730 -11.92317 -11.78301 -11.59652 -11.40622 -11.20520 -10.59627 -10.25754 -9.43098 -5.11714 -1.36370 -0.16545 0.01745 0.75541 1.02894 1.17793 1.56121 1.62902 1.96706 2.07589 2.25374 2.33397 2.58874 2.76068 3.02250 3.21947 3.29411 3.40919 3.46489 3.48178 3.60378 3.60776 3.69185 3.74665 3.85153 3.92703 3.94792 3.97130 4.00177 4.09170 4.09981 4.13021 4.21899 4.24866 4.27618 4.30797 4.43908 4.46811 4.50691 4.54810 4.72153 4.73911 4.76043 4.79632 4.83469 4.85704 4.87904 4.88497 4.95220 5.01743 5.03091 5.06962 5.09452 5.19841 5.39128 5.40506 6.23589 6.59619 6.73626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.464 3.536 5 O -0.539 6.539 6 C -0.076 4.076 7 H 0.150 0.850 8 C -0.111 4.111 9 C -0.170 4.170 10 C 0.122 3.878 11 F -0.213 7.213 12 C -0.665 4.665 13 S 2.580 3.420 14 O -0.964 6.964 15 O -0.960 6.960 16 O -0.663 6.663 17 C 0.099 3.901 18 C -0.145 4.145 19 C -0.110 4.110 20 O -0.555 6.555 21 Si 0.810 3.190 22 C -0.051 4.051 23 C -0.173 4.173 24 C 0.154 3.846 25 O -0.321 6.321 26 C 0.010 3.990 27 C -0.183 4.183 28 C -0.121 4.121 29 C -0.110 4.110 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.080 0.920 42 H 0.397 0.603 43 H -0.268 1.268 44 H -0.298 1.298 45 H 0.180 0.820 46 H 0.183 0.817 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.168 0.832 51 H 0.129 0.871 52 H 0.099 0.901 53 H 0.090 0.910 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 9.718 -12.996 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.095 4.095 7 H 0.168 0.832 8 C -0.148 4.148 9 C -0.208 4.208 10 C 0.103 3.897 11 F -0.194 7.194 12 C -0.795 4.795 13 S 2.679 3.321 14 O -0.962 6.962 15 O -0.958 6.958 16 O -0.622 6.622 17 C 0.058 3.942 18 C -0.148 4.148 19 C -0.216 4.216 20 O -0.363 6.363 21 Si 0.711 3.289 22 C -0.068 4.068 23 C -0.192 4.192 24 C 0.108 3.892 25 O -0.234 6.234 26 C -0.084 4.084 27 C -0.204 4.204 28 C -0.159 4.159 29 C -0.148 4.148 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.214 0.786 40 H 0.196 0.804 41 H 0.098 0.902 42 H 0.247 0.753 43 H -0.194 1.194 44 H -0.226 1.226 45 H 0.197 0.803 46 H 0.200 0.800 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.134 0.866 50 H 0.186 0.814 51 H 0.147 0.853 52 H 0.117 0.883 53 H 0.109 0.891 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.996 8.867 -11.813 15.302 hybrid contribution 0.908 -1.750 0.601 2.061 sum -3.088 7.117 -11.212 13.635 Atomic orbital electron populations 1.21825 0.90576 1.04269 1.03801 1.23255 0.96994 0.79389 1.02403 1.86510 1.24128 1.33421 1.83446 1.24223 0.80634 0.93191 0.71088 1.90675 1.61160 1.44428 1.46644 1.21277 0.96435 0.88654 1.03102 0.83218 1.21468 1.02918 0.94101 0.96332 1.22689 0.91832 0.99254 1.06976 1.20899 0.95271 0.87957 0.85606 1.92955 1.91418 1.81671 1.53363 1.31495 1.16079 1.08303 1.23580 1.05816 0.74292 0.74367 0.77577 1.93627 1.81633 1.74676 1.46240 1.93613 1.35612 1.79156 1.87462 1.85748 1.72177 1.42478 1.61812 1.17774 0.98230 0.92765 0.85472 1.20515 0.98826 0.97563 0.97892 1.25603 1.02986 1.04831 0.88223 1.86549 1.57719 1.33195 1.58830 0.94360 0.72070 0.83976 0.78457 1.21068 0.97604 0.96664 0.91487 1.21885 0.99126 1.00038 0.98111 1.18647 0.92655 0.93273 0.84653 1.86104 1.66078 1.55525 1.15697 1.23540 1.00936 0.91818 0.92073 1.20648 1.05291 1.04925 0.89535 1.22160 1.03173 0.94589 0.96013 1.21476 0.91854 0.97447 1.04036 0.88610 0.91418 0.90915 0.91144 0.91871 0.87927 0.92441 0.91045 0.84350 0.78612 0.80376 0.90190 0.75261 1.19368 1.22589 0.80348 0.80000 0.90475 0.90645 0.86551 0.81418 0.85271 0.88275 0.89101 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 10.29 71.98 0.74 1.14 16 2 C 0.05 0.12 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.53 10.12 -51.39 -0.52 -2.05 16 4 C 0.46 2.60 7.25 71.24 0.52 3.12 16 5 O -0.54 -6.67 15.73 21.97 0.35 -6.32 16 6 C -0.08 0.09 2.63 -11.54 -0.03 0.06 16 7 H 0.15 -1.23 8.14 -2.39 -0.02 -1.25 16 8 C -0.11 -0.04 5.01 30.59 0.15 0.11 16 9 C -0.17 0.12 4.56 30.59 0.14 0.26 16 10 C 0.12 0.04 0.88 -10.79 -0.01 0.03 16 11 F -0.21 -2.01 14.81 44.97 0.67 -1.35 16 12 C -0.67 1.76 4.27 71.98 0.31 2.07 16 13 S 2.58 23.01 4.20 -56.49 -0.24 22.77 16 14 O -0.96 -18.36 17.31 -118.57 -2.05 -20.41 16 15 O -0.96 -9.75 13.15 -118.57 -1.56 -11.31 16 16 O -0.66 -5.83 9.40 -61.46 -0.58 -6.41 16 17 C 0.10 0.37 4.71 22.49 0.11 0.48 16 18 C -0.14 -0.29 4.83 -19.75 -0.10 -0.39 16 19 C -0.11 -0.61 2.32 71.24 0.17 -0.45 16 20 O -0.55 -3.26 12.94 -148.98 -1.93 -5.19 16 21 Si 0.81 -1.04 29.83 68.60 2.05 1.01 16 22 C -0.05 0.32 8.65 22.24 0.19 0.51 16 23 C -0.17 1.53 9.04 22.38 0.20 1.73 16 24 C 0.15 -0.82 6.68 22.49 0.15 -0.67 16 25 O -0.32 2.14 10.50 -92.36 -0.97 1.17 16 26 C 0.01 -0.14 9.81 113.37 1.11 0.98 16 27 C -0.18 0.44 8.32 22.46 0.19 0.63 16 28 C -0.12 0.65 5.00 30.59 0.15 0.80 16 29 C -0.11 0.05 4.37 30.59 0.13 0.18 16 30 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.06 0.22 8.13 -2.39 -0.02 0.20 16 35 H 0.10 -0.18 8.11 -2.38 -0.02 -0.20 16 36 H 0.06 0.29 7.80 -2.39 -0.02 0.27 16 37 H 0.07 0.25 5.76 -2.39 -0.01 0.23 16 38 H 0.14 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.20 -2.14 6.59 -2.39 -0.02 -2.15 16 40 H 0.18 -1.28 8.14 -2.39 -0.02 -1.30 16 41 H 0.08 0.98 6.07 -2.39 -0.01 0.96 16 42 H 0.40 -2.19 8.59 -74.06 -0.64 -2.82 16 43 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 44 H -0.30 -1.97 7.11 99.48 0.71 -1.27 16 45 H 0.18 -2.41 5.14 -2.91 -0.01 -2.42 16 46 H 0.18 -2.95 6.29 -2.91 -0.02 -2.97 16 47 H 0.08 -1.24 7.66 -2.39 -0.02 -1.26 16 48 H 0.07 -1.19 7.66 -2.39 -0.02 -1.20 16 49 H 0.12 -1.77 8.14 -2.39 -0.02 -1.79 16 50 H 0.17 -1.24 7.01 -2.91 -0.02 -1.26 16 51 H 0.13 -1.63 8.14 -2.39 -0.02 -1.65 16 52 H 0.10 -0.65 8.14 -2.38 -0.02 -0.67 16 53 H 0.09 -0.12 8.10 -2.38 -0.02 -0.14 16 54 H 0.05 0.31 7.76 -2.39 -0.02 0.29 16 Total: 0.00 -39.30 439.10 0.14 -39.16 By element: Atomic # 1 Polarization: -22.60 SS G_CDS: 0.35 Total: -22.25 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.57 Total: 11.17 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -7.26 Total: -50.52 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.67 Total: -1.35 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.05 Total: 1.01 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.24 Total: 22.77 kcal Total: -39.30 0.14 -39.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_575378_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.348 kcal (2) G-P(sol) polarization free energy of solvation -39.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds