Wall clock time and date at job start Mon Mar 8 2021 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47163 * 2 1 4 4 C 1.34232 * 116.99985 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99713 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00020 * 179.97438 * 4 3 2 7 7 H 1.09005 * 112.84788 * 311.19528 * 6 4 3 8 8 C 1.53952 * 113.74136 * 82.39904 * 6 4 3 9 9 C 1.53784 * 87.01659 * 139.94392 * 8 6 4 10 10 F 1.39904 * 113.61331 * 89.22997 * 9 8 6 11 11 C 1.52999 * 113.61459 * 220.04804 * 9 8 6 12 12 S 1.81404 * 109.47082 * 284.13671 * 11 9 8 13 13 O 1.42090 * 110.54174 * 68.37670 * 12 11 9 14 14 O 1.42104 * 110.54231 * 291.62409 * 12 11 9 15 15 O 1.52200 * 104.44878 * 180.02562 * 12 11 9 16 16 C 1.35894 * 114.00349 * 74.99579 * 15 12 11 17 17 C 1.38759 * 120.02209 * 90.00411 * 16 15 12 18 18 C 1.50699 * 119.97449 * 0.02562 * 17 16 15 19 19 O 1.42894 * 109.47188 * 74.72307 * 18 17 16 20 20 Si 1.86298 * 109.46950 * 194.72981 * 18 17 16 21 21 C 1.38195 * 120.05196 * 179.73092 * 17 16 15 22 22 C 1.38158 * 120.11093 * 0.25046 * 21 17 16 23 23 C 1.38789 * 120.05322 * 359.97438 * 22 21 17 24 24 O 1.35899 * 120.03040 * 179.97438 * 23 22 21 25 25 C 1.42900 * 116.99778 * 359.97438 * 24 23 22 26 26 C 1.38616 * 119.94989 * 0.02562 * 23 22 21 27 27 C 1.53777 * 87.17423 * 334.63834 * 9 8 6 28 28 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47240 * 300.00453 * 1 2 3 30 30 H 1.09005 * 109.47042 * 60.00200 * 1 2 3 31 31 H 1.09001 * 109.47240 * 239.99547 * 2 1 3 32 32 H 1.09005 * 109.47042 * 119.99800 * 2 1 3 33 33 H 1.08999 * 113.61418 * 25.42722 * 8 6 4 34 34 H 1.08994 * 113.66678 * 254.46949 * 8 6 4 35 35 H 1.09001 * 109.47037 * 164.14060 * 11 9 8 36 36 H 1.08997 * 109.47334 * 44.13961 * 11 9 8 37 37 H 1.09006 * 109.46662 * 314.72576 * 18 17 16 38 38 H 0.96709 * 113.99337 * 60.00344 * 19 18 17 39 39 H 1.48506 * 109.99834 * 180.02562 * 20 18 17 40 40 H 1.48502 * 110.00011 * 301.31529 * 20 18 17 41 41 H 1.08000 * 119.94953 * 180.23353 * 21 17 16 42 42 H 1.08004 * 119.97537 * 180.02562 * 22 21 17 43 43 H 1.09004 * 109.47231 * 60.00332 * 25 24 23 44 44 H 1.09003 * 109.47519 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47538 * 300.00289 * 25 24 23 46 46 H 1.07990 * 120.05991 * 179.97438 * 26 23 22 47 47 H 1.09007 * 113.61409 * 139.93826 * 27 9 8 48 48 H 1.08993 * 113.61464 * 270.84029 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.4715 3.5809 -0.7565 8 6 3.9847 3.5822 1.3965 9 6 5.3560 4.1444 0.9858 10 9 5.2849 5.3941 0.3609 11 6 6.3975 4.0984 2.1056 12 16 6.0572 5.4184 3.3025 13 8 4.8524 5.1535 4.0077 14 8 6.3018 6.6925 2.7227 15 8 7.1483 5.2690 4.3530 16 6 8.3684 5.7112 3.9496 17 6 8.7346 7.0319 4.1663 18 6 7.7791 7.9758 4.8497 19 8 7.7400 7.6843 6.2481 20 14 8.3521 9.7304 4.5968 21 6 9.9773 7.4809 3.7613 22 6 10.8559 6.6177 3.1353 23 6 10.4924 5.2970 2.9122 24 8 11.3568 4.4485 2.2959 25 6 12.6225 4.9836 1.9040 26 6 9.2465 4.8442 3.3174 27 6 5.4582 2.9680 0.0007 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0355 2.8583 2.2098 34 1 3.2287 4.3504 1.5588 35 1 7.3922 4.2392 1.6826 36 1 6.3494 3.1319 2.6071 37 1 6.7825 7.8543 4.4252 38 1 8.5946 7.7722 6.6922 39 1 7.4185 10.6711 5.2666 40 1 9.7226 9.9008 5.1429 41 1 10.2621 8.5082 3.9342 42 1 11.8267 6.9708 2.8201 43 1 13.1501 5.3508 2.7843 44 1 13.2140 4.2037 1.4245 45 1 12.4688 5.8048 1.2037 46 1 8.9617 3.8170 3.1443 47 1 5.8900 3.2411 -0.9622 48 1 5.9125 2.0759 0.4317 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_575378_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:02:32 Heat of formation + Delta-G solvation = -231.548897 kcal Electronic energy + Delta-G solvation = -38259.007930 eV Core-core repulsion = 32904.724248 eV Total energy + Delta-G solvation = -5354.283682 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.116 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.20007 -42.61516 -41.88271 -40.71339 -39.37601 -38.84391 -38.50006 -37.58379 -37.51665 -37.26198 -32.94761 -32.65744 -31.89050 -31.50397 -28.56982 -27.34178 -26.99228 -26.40318 -24.82032 -23.93720 -23.18985 -22.38684 -21.60938 -20.89133 -20.03623 -19.33953 -19.16777 -18.85728 -18.41180 -18.00536 -17.86699 -17.66939 -17.47552 -17.19563 -16.79217 -16.69153 -16.39225 -16.37560 -16.13590 -16.00801 -15.65933 -15.42618 -15.17384 -14.72477 -14.66751 -14.66031 -14.34088 -14.25060 -14.01686 -13.74612 -13.70497 -13.69016 -13.53853 -13.44669 -13.38591 -13.20773 -13.11473 -12.99029 -12.96039 -12.55885 -12.49311 -12.37754 -12.21228 -12.03154 -11.90062 -11.72048 -11.59769 -11.53692 -11.43203 -10.69812 -10.28676 -9.47221 -4.94537 -1.35617 -0.18087 -0.02116 0.76969 0.95353 1.20171 1.47438 1.52917 1.89967 2.06873 2.24201 2.31909 2.60380 2.61147 2.72067 2.89113 3.12955 3.17051 3.30564 3.42716 3.54705 3.56017 3.74588 3.79968 3.82917 3.95233 4.01124 4.05859 4.07007 4.11724 4.29158 4.29709 4.32729 4.36064 4.39197 4.41657 4.45321 4.59100 4.70970 4.71978 4.76636 4.79497 4.83400 4.87403 4.97712 4.99697 5.03097 5.10395 5.37155 5.37729 6.19471 6.44867 6.56492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.476 3.524 5 O -0.529 6.529 6 C -0.107 4.107 7 H 0.153 0.847 8 C -0.158 4.158 9 C 0.097 3.903 10 F -0.180 7.180 11 C -0.657 4.657 12 S 2.581 3.419 13 O -0.953 6.953 14 O -0.950 6.950 15 O -0.661 6.661 16 C 0.100 3.900 17 C -0.139 4.139 18 C -0.120 4.120 19 O -0.547 6.547 20 Si 0.781 3.219 21 C -0.062 4.062 22 C -0.172 4.172 23 C 0.151 3.849 24 O -0.322 6.322 25 C 0.010 3.990 26 C -0.176 4.176 27 C -0.112 4.112 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.179 0.821 36 H 0.190 0.810 37 H 0.101 0.899 38 H 0.388 0.612 39 H -0.300 1.300 40 H -0.236 1.236 41 H 0.170 0.830 42 H 0.179 0.821 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.077 0.923 46 H 0.168 0.832 47 H 0.116 0.884 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -0.607 -5.245 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.320 3.680 5 O -0.418 6.418 6 C -0.126 4.126 7 H 0.171 0.829 8 C -0.196 4.196 9 C 0.077 3.923 10 F -0.161 7.161 11 C -0.786 4.786 12 S 2.680 3.320 13 O -0.951 6.951 14 O -0.948 6.948 15 O -0.620 6.620 16 C 0.058 3.942 17 C -0.142 4.142 18 C -0.227 4.227 19 O -0.356 6.356 20 Si 0.681 3.319 21 C -0.080 4.080 22 C -0.192 4.192 23 C 0.104 3.896 24 O -0.235 6.235 25 C -0.083 4.083 26 C -0.196 4.196 27 C -0.150 4.150 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.196 0.804 36 H 0.208 0.792 37 H 0.119 0.881 38 H 0.238 0.762 39 H -0.228 1.228 40 H -0.161 1.161 41 H 0.187 0.813 42 H 0.196 0.804 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.096 0.904 46 H 0.186 0.814 47 H 0.134 0.866 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.899 -0.025 -4.526 8.251 hybrid contribution -0.034 -1.279 0.862 1.543 sum 6.864 -1.304 -3.663 7.889 Atomic orbital electron populations 1.21840 0.90873 1.04303 1.03705 1.23299 0.96855 0.79104 1.02768 1.86533 1.24137 1.33776 1.83262 1.23623 0.80704 0.92342 0.71308 1.90670 1.60996 1.43733 1.46443 1.22616 0.97812 0.90911 1.01230 0.82889 1.23988 0.96251 1.02240 0.97109 1.21308 0.95471 0.82163 0.93384 1.92991 1.97063 1.42413 1.83590 1.31275 1.10954 1.22793 1.13538 1.05788 0.74176 0.76976 0.75075 1.93622 1.44042 1.86687 1.70733 1.93615 1.83519 1.38558 1.79157 1.85729 1.29925 1.84875 1.61457 1.17707 0.82217 0.92963 1.01299 1.20447 0.97720 0.93313 1.02727 1.25706 1.03388 1.11213 0.82377 1.86638 1.37669 1.91413 1.19852 0.93668 0.77906 0.70210 0.90101 1.21170 0.90424 1.01542 0.94836 1.21838 1.02930 0.91993 1.02392 1.18689 0.89293 0.89577 0.92041 1.86102 1.27640 1.37863 1.71929 1.23534 0.81059 1.02479 1.01257 1.20616 0.93276 1.01673 1.04075 1.23595 0.93190 0.97076 1.01146 0.88440 0.91411 0.91249 0.90999 0.91135 0.85850 0.87222 0.80381 0.79235 0.88134 0.76194 1.22782 1.16108 0.81255 0.80384 0.90867 0.86454 0.90432 0.81434 0.86563 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.05 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.34 10.22 -51.44 -0.53 -1.86 16 4 C 0.48 1.71 7.49 71.23 0.53 2.25 16 5 O -0.53 -4.37 15.65 21.97 0.34 -4.02 16 6 C -0.11 0.15 4.23 -10.96 -0.05 0.11 16 7 H 0.15 -0.72 8.14 -2.38 -0.02 -0.74 16 8 C -0.16 0.07 6.76 31.18 0.21 0.28 16 9 C 0.10 -0.06 1.56 -10.27 -0.02 -0.08 16 10 F -0.18 -0.63 16.58 44.97 0.75 0.12 16 11 C -0.66 1.73 5.10 71.98 0.37 2.10 16 12 S 2.58 18.70 4.67 -56.49 -0.26 18.44 16 13 O -0.95 -13.13 17.84 -118.57 -2.12 -15.25 16 14 O -0.95 -9.67 13.83 -118.57 -1.64 -11.31 16 15 O -0.66 -5.17 9.47 -61.45 -0.58 -5.75 16 16 C 0.10 0.46 4.78 22.49 0.11 0.57 16 17 C -0.14 -0.50 4.68 -19.75 -0.09 -0.59 16 18 C -0.12 -0.81 2.23 71.24 0.16 -0.65 16 19 O -0.55 -4.65 12.88 -148.98 -1.92 -6.56 16 20 Si 0.78 0.27 30.24 68.60 2.07 2.34 16 21 C -0.06 0.21 8.65 22.24 0.19 0.40 16 22 C -0.17 1.01 9.04 22.38 0.20 1.22 16 23 C 0.15 -0.40 6.68 22.49 0.15 -0.25 16 24 O -0.32 1.21 10.49 -92.41 -0.97 0.24 16 25 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 26 C -0.18 0.08 8.39 22.46 0.19 0.27 16 27 C -0.11 0.39 6.86 31.12 0.21 0.60 16 28 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 32 H 0.07 0.07 8.13 -2.38 -0.02 0.05 16 33 H 0.12 -0.25 8.01 -2.39 -0.02 -0.27 16 34 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.18 -1.33 6.58 -2.39 -0.02 -1.34 16 36 H 0.19 -1.67 8.09 -2.39 -0.02 -1.69 16 37 H 0.10 1.11 5.43 -2.38 -0.01 1.10 16 38 H 0.39 -0.09 8.70 -74.05 -0.64 -0.73 16 39 H -0.30 -2.49 7.11 99.48 0.71 -1.79 16 40 H -0.24 0.61 6.68 99.48 0.66 1.28 16 41 H 0.17 -1.43 4.85 -2.91 -0.01 -1.44 16 42 H 0.18 -2.29 6.29 -2.91 -0.02 -2.31 16 43 H 0.07 -0.95 7.66 -2.39 -0.02 -0.97 16 44 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 45 H 0.08 -1.05 7.66 -2.38 -0.02 -1.07 16 46 H 0.17 -0.89 7.47 -2.92 -0.02 -0.91 16 47 H 0.12 -0.70 8.14 -2.38 -0.02 -0.72 16 48 H 0.13 -0.55 7.39 -2.39 -0.02 -0.56 16 Total: 0.00 -29.41 409.82 0.00 -29.41 By element: Atomic # 1 Polarization: -15.09 SS G_CDS: 0.38 Total: -14.71 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 4.47 Total: 8.91 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -7.41 Total: -44.51 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.75 Total: 0.12 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.07 Total: 2.34 kcal Atomic # 16 Polarization: 18.70 SS G_CDS: -0.26 Total: 18.44 kcal Total: -29.41 0.00 -29.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_575378_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.136 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds