Wall clock time and date at job start Mon Mar 8 2021 10:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.47328 * 2 1 4 4 C 1.86300 * 109.47131 * 239.99888 * 2 1 3 5 5 C 1.86303 * 109.46910 * 119.99966 * 2 1 3 6 6 C 1.52995 * 109.47253 * 60.00106 * 5 2 1 7 7 C 1.53000 * 109.47230 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.47054 * 179.97438 * 7 6 5 9 9 O 1.42097 * 110.54730 * 68.37358 * 8 7 6 10 10 O 1.42099 * 110.54321 * 291.61958 * 8 7 6 11 11 O 1.52201 * 104.45133 * 179.97438 * 8 7 6 12 12 C 1.36018 * 113.99759 * 74.99752 * 11 8 7 13 13 C 1.38830 * 120.06785 * 90.00558 * 12 11 8 14 14 F 1.35106 * 120.03316 * 359.97438 * 13 12 11 15 15 C 1.38368 * 119.92966 * 180.02562 * 13 12 11 16 16 C 1.38251 * 120.07124 * 0.02562 * 15 13 12 17 17 C 1.50699 * 119.93267 * 179.97438 * 16 15 13 18 18 O 1.42898 * 109.46964 * 299.99826 * 17 16 15 19 19 Si 1.86301 * 109.47146 * 179.97438 * 17 16 15 20 20 H 1.48506 * 109.47113 * 59.99890 * 19 17 16 21 21 H 1.48503 * 109.46998 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47376 * 300.00116 * 19 17 16 23 23 C 1.38259 * 120.13781 * 0.24618 * 16 15 13 24 24 C 1.38372 * 120.06767 * 359.45747 * 23 16 15 25 25 F 1.35096 * 120.03741 * 180.29217 * 24 23 16 26 26 H 1.08999 * 109.47079 * 300.00007 * 1 2 3 27 27 H 1.09001 * 109.47119 * 59.99919 * 1 2 3 28 28 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47087 * 300.00101 * 3 2 1 31 31 H 1.09008 * 109.47077 * 59.99819 * 3 2 1 32 32 H 1.09002 * 109.46854 * 299.99865 * 4 2 1 33 33 H 1.08997 * 109.46932 * 60.00611 * 4 2 1 34 34 H 1.09004 * 109.46600 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47272 * 299.99909 * 5 2 1 36 36 H 1.08996 * 109.47248 * 180.02562 * 5 2 1 37 37 H 1.08999 * 109.47143 * 59.99724 * 6 5 2 38 38 H 1.09009 * 109.46910 * 300.00008 * 6 5 2 39 39 H 1.08999 * 109.47421 * 59.99726 * 7 6 5 40 40 H 1.09001 * 109.46989 * 299.99473 * 7 6 5 41 41 H 1.08003 * 119.96614 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46959 * 59.99797 * 17 16 15 43 43 H 0.96698 * 113.99898 * 299.99550 * 18 17 16 44 44 H 1.07994 * 119.96406 * 179.70721 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4834 -3.0418 2.7708 8 16 1.8781 -4.7518 2.7711 9 8 2.4906 -5.4979 1.7284 10 8 0.4707 -4.7825 2.9647 11 8 2.4463 -5.3556 4.0475 12 6 1.8148 -4.9478 5.1811 13 6 0.7265 -5.6606 5.6658 14 9 0.2927 -6.7603 5.0117 15 6 0.0859 -5.2429 6.8190 16 6 0.5282 -4.1169 7.4881 17 6 -0.1722 -3.6645 8.7434 18 8 -1.5404 -3.3766 8.4481 19 14 0.6581 -2.1312 9.3996 20 1 0.5884 -1.0550 8.3786 21 1 -0.0325 -1.6851 10.6362 22 1 2.0797 -2.4309 9.7065 23 6 1.6082 -3.4017 7.0048 24 6 2.2569 -3.8176 5.8555 25 9 3.3158 -3.1217 5.3871 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5210 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.1206 -0.3644 2.4112 36 1 3.5739 -0.8779 1.5215 37 1 2.3373 -2.8345 0.6312 38 1 0.8839 -2.3207 1.5212 39 1 2.1197 -2.5278 3.6605 40 1 3.5734 -3.0418 2.7712 41 1 -0.7611 -5.7968 7.1964 42 1 -0.1207 -4.4542 9.4929 43 1 -1.6622 -2.6813 7.7871 44 1 1.9484 -2.5197 7.5271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_6672276_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:41:40 Heat of formation + Delta-G solvation = -241.352387 kcal Electronic energy + Delta-G solvation = -30424.082365 eV Core-core repulsion = 25843.286969 eV Total energy + Delta-G solvation = -4580.795396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.70254 -50.35348 -42.16328 -40.29010 -38.35626 -37.66706 -37.23837 -36.03489 -32.57353 -32.05683 -29.78847 -28.58048 -28.47178 -28.41480 -27.57316 -24.88159 -24.01902 -23.11489 -21.92625 -19.96228 -19.64268 -19.39405 -19.02997 -18.19976 -17.82171 -17.30511 -17.25182 -17.10989 -16.79136 -16.53393 -16.39506 -16.16056 -15.83229 -15.34986 -15.09408 -14.91351 -14.45312 -14.31427 -14.22263 -14.14482 -14.06467 -13.81858 -13.71188 -13.66877 -13.32029 -13.31637 -13.30574 -13.20994 -13.19755 -13.14836 -13.11274 -13.07326 -12.66079 -12.39917 -12.07970 -12.05224 -11.94665 -10.90981 -10.89240 -10.86185 -10.65029 -10.41212 -10.34427 -1.35894 -0.66317 -0.62491 0.72959 0.78393 1.16667 1.23318 1.58280 1.65934 1.66059 1.78427 1.79856 2.03619 2.41163 2.55068 2.66693 2.74154 2.85506 3.03666 3.21509 3.29884 3.45812 3.47762 3.63257 3.93706 3.94442 4.02071 4.16206 4.17292 4.33691 4.45378 4.45950 4.58292 4.60933 4.65579 4.66976 4.70241 4.70671 4.72415 4.73642 4.84073 5.12041 5.19680 5.41307 5.49241 5.51659 6.20947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.002 2.998 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.405 4.405 6 C -0.101 4.101 7 C -0.643 4.643 8 S 2.572 3.428 9 O -0.913 6.913 10 O -0.942 6.942 11 O -0.649 6.649 12 C -0.001 4.001 13 C 0.169 3.831 14 F -0.102 7.102 15 C -0.118 4.118 16 C -0.045 4.045 17 C -0.085 4.085 18 O -0.529 6.529 19 Si 0.941 3.059 20 H -0.244 1.244 21 H -0.242 1.242 22 H -0.244 1.244 23 C -0.157 4.157 24 C 0.130 3.870 25 F -0.111 7.111 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.134 0.866 43 H 0.382 0.618 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 5.408 4.434 6.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.199 2.801 3 C -0.556 4.556 4 C -0.561 4.561 5 C -0.491 4.491 6 C -0.139 4.139 7 C -0.771 4.771 8 S 2.669 3.331 9 O -0.912 6.912 10 O -0.941 6.941 11 O -0.607 6.607 12 C -0.046 4.046 13 C 0.147 3.853 14 F -0.080 7.080 15 C -0.137 4.137 16 C -0.046 4.046 17 C -0.195 4.195 18 O -0.334 6.334 19 Si 0.762 3.238 20 H -0.168 1.168 21 H -0.166 1.166 22 H -0.167 1.167 23 C -0.176 4.176 24 C 0.109 3.891 25 F -0.089 7.089 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.152 0.848 43 H 0.229 0.771 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.060 4.890 4.939 6.950 hybrid contribution 0.626 0.351 -0.905 1.155 sum 0.566 5.240 4.034 6.637 Atomic orbital electron populations 1.26169 1.20639 1.04620 1.04596 0.79327 0.67285 0.67037 0.66454 1.26100 1.06255 1.18777 1.04503 1.26178 1.06393 1.08184 1.15360 1.26172 1.06379 1.00265 1.16295 1.20996 1.01654 0.97093 0.94203 1.30982 1.14048 1.23358 1.08681 1.06285 0.74949 0.77761 0.74117 1.93674 1.77455 1.67708 1.52323 1.93669 1.30987 1.86244 1.83162 1.85824 1.69851 1.76194 1.28820 1.17955 0.97608 0.98319 0.90670 1.17447 0.91695 0.84587 0.91598 1.91646 1.87987 1.48779 1.79600 1.21164 1.01559 0.97727 0.93263 1.20315 0.93915 0.93340 0.97067 1.25145 0.87423 1.11003 0.95906 1.86584 1.21479 1.61077 1.64307 0.85776 0.79963 0.76201 0.81870 1.16782 1.16570 1.16700 1.21090 0.97789 1.02887 0.95816 1.17292 0.86983 0.90244 0.94612 1.91617 1.52780 1.77022 1.87466 0.91178 0.91072 0.91108 0.91239 0.91124 0.91272 0.91101 0.91080 0.91128 0.90053 0.89916 0.89798 0.89860 0.84867 0.83797 0.81369 0.84798 0.77051 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.81 8.65 101.05 0.87 1.69 16 2 Si 1.00 -3.02 12.19 -169.99 -2.07 -5.10 16 3 C -0.45 0.87 8.65 101.05 0.87 1.75 16 4 C -0.45 0.68 8.65 101.05 0.87 1.55 16 5 C -0.41 1.01 4.45 37.15 0.17 1.17 16 6 C -0.10 0.12 4.59 -26.73 -0.12 0.00 16 7 C -0.64 0.53 4.64 37.16 0.17 0.70 16 8 S 2.57 7.46 5.17 -107.50 -0.56 6.90 16 9 O -0.91 -5.61 18.09 -67.04 -1.21 -6.82 16 10 O -0.94 -4.16 15.95 -67.03 -1.07 -5.23 16 11 O -0.65 -1.97 9.78 -52.12 -0.51 -2.48 16 12 C 0.00 0.00 4.81 -39.14 -0.19 -0.19 16 13 C 0.17 0.24 6.48 -39.31 -0.25 -0.02 16 14 F -0.10 -0.35 16.73 2.25 0.04 -0.31 16 15 C -0.12 0.19 9.58 -39.53 -0.38 -0.19 16 16 C -0.04 0.13 5.39 -104.61 -0.56 -0.43 16 17 C -0.08 0.36 2.82 36.01 0.10 0.46 16 18 O -0.53 1.75 12.77 -35.23 -0.45 1.30 16 19 Si 0.94 -3.78 25.07 -169.99 -4.26 -8.04 16 20 H -0.24 0.99 7.11 56.52 0.40 1.39 16 21 H -0.24 0.54 7.11 56.52 0.40 0.95 16 22 H -0.24 0.86 7.11 56.52 0.40 1.26 16 23 C -0.16 0.41 8.64 -39.52 -0.34 0.07 16 24 C 0.13 -0.08 6.33 -39.31 -0.25 -0.33 16 25 F -0.11 0.09 14.68 2.25 0.03 0.12 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.14 7.96 -51.92 -0.41 -0.55 16 32 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 36 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 37 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 38 H 0.08 -0.19 7.79 -51.92 -0.40 -0.59 16 39 H 0.13 -0.33 6.09 -51.92 -0.32 -0.65 16 40 H 0.14 -0.33 8.14 -51.92 -0.42 -0.75 16 41 H 0.17 -0.55 8.06 -52.48 -0.42 -0.97 16 42 H 0.13 -0.74 7.96 -51.93 -0.41 -1.16 16 43 H 0.38 -2.48 8.70 45.56 0.40 -2.08 16 44 H 0.16 -0.72 4.87 -52.49 -0.26 -0.98 16 LS Contribution 382.09 15.07 5.76 5.76 Total: 0.00 -8.93 382.09 -8.91 -17.84 By element: Atomic # 1 Polarization: -4.63 SS G_CDS: -5.57 Total: -10.20 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 0.96 Total: 6.25 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -3.24 Total: -13.22 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.07 Total: -0.19 kcal Atomic # 14 Polarization: -6.80 SS G_CDS: -6.33 Total: -13.13 kcal Atomic # 16 Polarization: 7.46 SS G_CDS: -0.56 Total: 6.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -8.93 -8.91 -17.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.511 kcal (2) G-P(sol) polarization free energy of solvation -8.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds