Wall clock time and date at job start Mon Mar 8 2021 10:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 109.47328 * 2 1 4 4 C 1.86300 * 109.47131 * 239.99888 * 2 1 3 5 5 C 1.86303 * 109.46910 * 119.99966 * 2 1 3 6 6 C 1.52995 * 109.47253 * 60.00106 * 5 2 1 7 7 C 1.53000 * 109.47230 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.47054 * 179.97438 * 7 6 5 9 9 O 1.42097 * 110.54730 * 68.37358 * 8 7 6 10 10 O 1.42099 * 110.54321 * 291.61958 * 8 7 6 11 11 O 1.52201 * 104.45133 * 179.97438 * 8 7 6 12 12 C 1.36018 * 113.99759 * 74.99752 * 11 8 7 13 13 C 1.38830 * 120.06785 * 90.00558 * 12 11 8 14 14 F 1.35106 * 120.03316 * 359.97438 * 13 12 11 15 15 C 1.38368 * 119.92966 * 180.02562 * 13 12 11 16 16 C 1.38251 * 120.07124 * 0.02562 * 15 13 12 17 17 C 1.50699 * 119.93267 * 179.97438 * 16 15 13 18 18 O 1.42898 * 109.46964 * 299.99826 * 17 16 15 19 19 Si 1.86301 * 109.47146 * 179.97438 * 17 16 15 20 20 H 1.48506 * 109.47113 * 59.99890 * 19 17 16 21 21 H 1.48503 * 109.46998 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47376 * 300.00116 * 19 17 16 23 23 C 1.38259 * 120.13781 * 0.24618 * 16 15 13 24 24 C 1.38372 * 120.06767 * 359.45747 * 23 16 15 25 25 F 1.35096 * 120.03741 * 180.29217 * 24 23 16 26 26 H 1.08999 * 109.47079 * 300.00007 * 1 2 3 27 27 H 1.09001 * 109.47119 * 59.99919 * 1 2 3 28 28 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47087 * 300.00101 * 3 2 1 31 31 H 1.09008 * 109.47077 * 59.99819 * 3 2 1 32 32 H 1.09002 * 109.46854 * 299.99865 * 4 2 1 33 33 H 1.08997 * 109.46932 * 60.00611 * 4 2 1 34 34 H 1.09004 * 109.46600 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47272 * 299.99909 * 5 2 1 36 36 H 1.08996 * 109.47248 * 180.02562 * 5 2 1 37 37 H 1.08999 * 109.47143 * 59.99724 * 6 5 2 38 38 H 1.09009 * 109.46910 * 300.00008 * 6 5 2 39 39 H 1.08999 * 109.47421 * 59.99726 * 7 6 5 40 40 H 1.09001 * 109.46989 * 299.99473 * 7 6 5 41 41 H 1.08003 * 119.96614 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46959 * 59.99797 * 17 16 15 43 43 H 0.96698 * 113.99898 * 299.99550 * 18 17 16 44 44 H 1.07994 * 119.96406 * 179.70721 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4834 -3.0418 2.7708 8 16 1.8781 -4.7518 2.7711 9 8 2.4906 -5.4979 1.7284 10 8 0.4707 -4.7825 2.9647 11 8 2.4463 -5.3556 4.0475 12 6 1.8148 -4.9478 5.1811 13 6 0.7265 -5.6606 5.6658 14 9 0.2927 -6.7603 5.0117 15 6 0.0859 -5.2429 6.8190 16 6 0.5282 -4.1169 7.4881 17 6 -0.1722 -3.6645 8.7434 18 8 -1.5404 -3.3766 8.4481 19 14 0.6581 -2.1312 9.3996 20 1 0.5884 -1.0550 8.3786 21 1 -0.0325 -1.6851 10.6362 22 1 2.0797 -2.4309 9.7065 23 6 1.6082 -3.4017 7.0048 24 6 2.2569 -3.8176 5.8555 25 9 3.3158 -3.1217 5.3871 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5210 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.1206 -0.3644 2.4112 36 1 3.5739 -0.8779 1.5215 37 1 2.3373 -2.8345 0.6312 38 1 0.8839 -2.3207 1.5212 39 1 2.1197 -2.5278 3.6605 40 1 3.5734 -3.0418 2.7712 41 1 -0.7611 -5.7968 7.1964 42 1 -0.1207 -4.4542 9.4929 43 1 -1.6622 -2.6813 7.7871 44 1 1.9484 -2.5197 7.5271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_6672276_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:41:39 Heat of formation + Delta-G solvation = -238.989004 kcal Electronic energy + Delta-G solvation = -30423.979881 eV Core-core repulsion = 25843.286969 eV Total energy + Delta-G solvation = -4580.692912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 368.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.61322 -50.45970 -42.21480 -40.18558 -38.61359 -37.52271 -37.39373 -35.92595 -32.46593 -31.95076 -29.63515 -28.43746 -28.31212 -28.26068 -27.40119 -24.79750 -23.94701 -22.98763 -21.92432 -20.04294 -19.59897 -19.40253 -19.08947 -18.15729 -17.80426 -17.26538 -17.16565 -17.10949 -16.80527 -16.41862 -16.14432 -15.98085 -15.86973 -15.38926 -14.94310 -14.81081 -14.32893 -14.26606 -14.11704 -14.04252 -13.98426 -13.70709 -13.64422 -13.59021 -13.52589 -13.47899 -13.16757 -13.14232 -13.10496 -13.06363 -12.98399 -12.96926 -12.36445 -12.06738 -11.94709 -11.86483 -11.80182 -10.72302 -10.69068 -10.66015 -10.47123 -10.29214 -10.26048 -1.41949 -0.63343 -0.55243 0.63625 1.11566 1.51237 1.55399 1.70375 1.88809 1.98813 2.00170 2.01122 2.09875 2.29847 2.58107 2.72031 2.83412 3.01696 3.14884 3.33052 3.54980 3.56369 3.66350 3.69377 4.08817 4.10697 4.12825 4.32530 4.38870 4.54856 4.56318 4.61126 4.74094 4.76574 4.81085 4.83052 4.85938 4.86924 4.87712 4.88018 5.05514 5.20865 5.43404 5.59312 5.65940 5.67204 6.69839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 Si 1.070 2.930 3 C -0.462 4.462 4 C -0.476 4.476 5 C -0.411 4.411 6 C -0.119 4.119 7 C -0.620 4.620 8 S 2.563 3.437 9 O -0.961 6.961 10 O -0.967 6.967 11 O -0.661 6.661 12 C -0.027 4.027 13 C 0.139 3.861 14 F -0.124 7.124 15 C -0.109 4.109 16 C -0.032 4.032 17 C -0.080 4.080 18 O -0.544 6.544 19 Si 0.966 3.034 20 H -0.237 1.237 21 H -0.270 1.270 22 H -0.245 1.245 23 C -0.144 4.144 24 C 0.130 3.870 25 F -0.108 7.108 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.149 0.851 43 H 0.395 0.605 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 7.329 6.031 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.262 2.738 3 C -0.569 4.569 4 C -0.582 4.582 5 C -0.496 4.496 6 C -0.158 4.158 7 C -0.751 4.751 8 S 2.664 3.336 9 O -0.959 6.959 10 O -0.966 6.966 11 O -0.619 6.619 12 C -0.071 4.071 13 C 0.117 3.883 14 F -0.102 7.102 15 C -0.128 4.128 16 C -0.034 4.034 17 C -0.190 4.190 18 O -0.351 6.351 19 Si 0.788 3.212 20 H -0.160 1.160 21 H -0.195 1.195 22 H -0.169 1.169 23 C -0.163 4.163 24 C 0.108 3.892 25 F -0.087 7.087 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.201 0.799 42 H 0.167 0.833 43 H 0.245 0.755 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.174 6.773 6.501 9.389 hybrid contribution 0.522 -0.157 -1.325 1.432 sum 0.696 6.616 5.176 8.429 Atomic orbital electron populations 1.26393 1.22288 1.04423 1.04628 0.78281 0.65303 0.65407 0.64772 1.26257 1.06413 1.19702 1.04480 1.26463 1.06586 1.08352 1.16758 1.26261 1.07097 0.99065 1.17206 1.21258 1.02528 0.98012 0.93987 1.30852 1.15114 1.19064 1.10110 1.06433 0.74411 0.79289 0.73469 1.93605 1.77934 1.70158 1.54215 1.93620 1.32481 1.87205 1.83284 1.85774 1.69820 1.76993 1.29339 1.18337 0.98400 0.99640 0.90688 1.17852 0.92782 0.84777 0.92893 1.91581 1.88367 1.49979 1.80302 1.21363 1.01400 0.97962 0.92064 1.20520 0.93435 0.92348 0.97055 1.25230 0.86993 1.11541 0.95205 1.86566 1.21772 1.61842 1.64924 0.85442 0.79178 0.75980 0.80631 1.16023 1.19472 1.16913 1.21389 0.97037 1.03150 0.94692 1.17342 0.87201 0.89691 0.94984 1.91617 1.52708 1.76782 1.87553 0.90743 0.91489 0.91437 0.91180 0.91577 0.90905 0.91554 0.91475 0.91135 0.88610 0.89016 0.89627 0.89054 0.82663 0.81915 0.79950 0.83333 0.75509 0.80127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.80 8.65 113.37 0.98 2.78 16 2 Si 1.07 -7.23 12.19 68.60 0.84 -6.39 16 3 C -0.46 2.21 8.65 113.37 0.98 3.19 16 4 C -0.48 1.26 8.65 113.37 0.98 2.24 16 5 C -0.41 2.76 4.45 71.98 0.32 3.08 16 6 C -0.12 0.37 4.59 30.59 0.14 0.51 16 7 C -0.62 1.37 4.64 71.98 0.33 1.71 16 8 S 2.56 19.37 5.17 -56.49 -0.29 19.07 16 9 O -0.96 -14.48 18.09 -118.57 -2.15 -16.62 16 10 O -0.97 -10.61 15.95 -118.57 -1.89 -12.51 16 11 O -0.66 -5.24 9.78 -62.84 -0.61 -5.86 16 12 C -0.03 -0.11 4.81 22.56 0.11 0.00 16 13 C 0.14 0.56 6.48 22.44 0.15 0.71 16 14 F -0.12 -1.18 16.73 44.97 0.75 -0.42 16 15 C -0.11 0.38 9.58 22.30 0.21 0.59 16 16 C -0.03 0.24 5.39 -19.86 -0.11 0.13 16 17 C -0.08 0.83 2.82 71.24 0.20 1.03 16 18 O -0.54 4.49 12.77 -148.98 -1.90 2.59 16 19 Si 0.97 -9.56 25.07 68.60 1.72 -7.84 16 20 H -0.24 2.58 7.11 99.48 0.71 3.29 16 21 H -0.27 1.36 7.11 99.48 0.71 2.06 16 22 H -0.25 2.29 7.11 99.48 0.71 3.00 16 23 C -0.14 1.02 8.64 22.31 0.19 1.22 16 24 C 0.13 -0.26 6.33 22.45 0.14 -0.11 16 25 F -0.11 0.33 14.68 44.97 0.66 0.99 16 26 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.39 7.96 -2.38 -0.02 -0.40 16 32 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 33 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 34 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 35 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 36 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 37 H 0.09 -0.29 7.79 -2.39 -0.02 -0.31 16 38 H 0.09 -0.44 7.79 -2.38 -0.02 -0.45 16 39 H 0.16 -1.03 6.09 -2.39 -0.01 -1.04 16 40 H 0.16 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.18 -1.27 8.06 -2.91 -0.02 -1.29 16 42 H 0.15 -1.96 7.96 -2.39 -0.02 -1.98 16 43 H 0.39 -5.80 8.70 -74.06 -0.64 -6.44 16 44 H 0.18 -2.20 4.87 -2.91 -0.01 -2.21 16 Total: 0.00 -23.14 382.09 2.90 -20.24 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: 1.14 Total: -10.31 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 4.63 Total: 17.06 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -6.55 Total: -32.40 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 1.41 Total: 0.56 kcal Atomic # 14 Polarization: -16.79 SS G_CDS: 2.56 Total: -14.23 kcal Atomic # 16 Polarization: 19.37 SS G_CDS: -0.29 Total: 19.07 kcal Total: -23.14 2.90 -20.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.747 kcal (2) G-P(sol) polarization free energy of solvation -23.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds