Wall clock time and date at job start Mon Mar 8 2021 11:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00207 * 2 1 4 4 O 1.20821 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99926 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.91064 * 48.75165 * 5 3 2 7 7 C 1.53787 * 113.61150 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.07963 * 139.98062 * 7 5 3 9 9 H 1.09001 * 113.61377 * 89.20020 * 8 7 5 10 10 S 1.81401 * 113.61178 * 220.01571 * 8 7 5 11 11 O 1.42099 * 110.54303 * 291.62237 * 10 8 7 12 12 O 1.42102 * 110.54066 * 68.37666 * 10 8 7 13 13 O 1.52203 * 104.45089 * 180.02562 * 10 8 7 14 14 C 1.35919 * 113.99646 * 74.99628 * 13 10 8 15 15 C 1.38706 * 120.04441 * 90.00578 * 14 13 10 16 16 C 1.38160 * 119.95980 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.98257 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.46932 * 15.00007 * 17 16 15 19 19 Si 1.86294 * 109.47059 * 134.99707 * 17 16 15 20 20 C 1.38324 * 120.04044 * 359.97438 * 16 15 14 21 21 Br 1.89097 * 119.95173 * 180.02562 * 20 16 15 22 22 C 1.38366 * 120.09253 * 0.02562 * 20 16 15 23 23 C 1.38113 * 120.04434 * 359.71774 * 22 20 16 24 24 C 1.53779 * 87.08402 * 334.56577 * 8 7 5 25 25 H 1.09002 * 109.46921 * 60.00622 * 1 2 3 26 26 H 1.09002 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47738 * 299.99919 * 1 2 3 28 28 H 1.08997 * 113.61028 * 254.53022 * 7 5 3 29 29 H 1.09000 * 113.61529 * 25.43161 * 7 5 3 30 30 H 1.08001 * 120.02062 * 0.02562 * 15 14 13 31 31 H 1.08994 * 109.47317 * 255.00004 * 17 16 15 32 32 H 0.96699 * 114.00255 * 59.99991 * 18 17 16 33 33 H 1.48508 * 109.99905 * 180.02562 * 19 17 16 34 34 H 1.48501 * 110.00291 * 301.32035 * 19 17 16 35 35 H 1.08000 * 119.97813 * 180.02562 * 22 20 16 36 36 H 1.08011 * 120.02160 * 180.27491 * 23 22 20 37 37 H 1.09002 * 113.61557 * 270.88569 * 24 8 7 38 38 H 1.09004 * 113.61501 * 139.97990 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0249 0.6358 -0.7539 7 6 4.1078 2.7142 0.0011 8 6 5.1806 2.2265 0.9890 9 1 6.0812 1.8493 0.5044 10 16 5.5381 3.4103 2.3162 11 8 6.1844 4.5635 1.7951 12 8 4.4260 3.5270 3.1931 13 8 6.6087 2.7279 3.1557 14 6 7.8424 2.7291 2.5854 15 6 8.7195 3.7756 2.8298 16 6 9.9729 3.7753 2.2488 17 6 10.9260 4.9122 2.5136 18 8 10.4666 5.6671 3.6366 19 14 12.6213 4.2300 2.8755 20 6 10.3537 2.7320 1.4242 21 35 12.0702 2.7339 0.6308 22 6 9.4804 1.6872 1.1790 23 6 8.2284 1.6811 1.7622 24 6 4.1906 1.1231 1.3978 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.5111 3.0292 -0.9612 29 1 3.4171 3.4403 0.4299 30 1 8.4226 4.5901 3.4740 31 1 10.9737 5.5579 1.6368 32 1 10.3995 5.1548 4.4540 33 1 13.5704 5.3413 3.1390 34 1 12.5637 3.3227 4.0498 35 1 9.7798 0.8734 0.5352 36 1 7.5487 0.8631 1.5741 37 1 3.5226 1.4143 2.2085 38 1 4.6609 0.1537 1.5630 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_7425988_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:41:20 Heat of formation + Delta-G solvation = -155.670910 kcal Electronic energy + Delta-G solvation = -28587.100418 eV Core-core repulsion = 24151.038074 eV Total energy + Delta-G solvation = -4436.062344 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54523 -41.96809 -40.19470 -39.71955 -38.40643 -37.82043 -37.39741 -37.30296 -34.04776 -32.94535 -30.69828 -30.01076 -27.97152 -27.35772 -27.32692 -24.76316 -23.87155 -23.12461 -21.64408 -20.94512 -19.90122 -19.43927 -18.89180 -18.52782 -18.17850 -17.85653 -17.60840 -17.55587 -16.98010 -16.78200 -16.38924 -16.11612 -15.70043 -15.46443 -14.99894 -14.81078 -14.60350 -14.45669 -14.16900 -14.13638 -13.94483 -13.85474 -13.59581 -13.50270 -13.32425 -13.27123 -13.15974 -12.96521 -12.85822 -12.70552 -12.57642 -12.28789 -12.14422 -11.87647 -11.86284 -11.76178 -11.37091 -11.06337 -10.32474 -10.04292 -4.64336 -1.35795 -0.56054 -0.33943 -0.11360 0.75206 1.03012 1.11145 1.57075 1.58002 1.85521 2.06373 2.30120 2.42129 2.67084 2.85595 2.98698 3.01888 3.06799 3.22441 3.32148 3.50085 3.64743 3.72441 3.75259 3.91260 4.03357 4.10994 4.15178 4.17114 4.20281 4.30023 4.30962 4.39053 4.41671 4.51453 4.55146 4.60705 4.70015 4.70449 5.16248 5.27908 6.26535 6.60731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.139 0.861 7 C -0.086 4.086 8 C -0.653 4.653 9 H 0.163 0.837 10 S 2.596 3.404 11 O -0.938 6.938 12 O -0.912 6.912 13 O -0.659 6.659 14 C 0.093 3.907 15 C -0.078 4.078 16 C -0.059 4.059 17 C -0.068 4.068 18 O -0.529 6.529 19 Si 0.546 3.454 20 C -0.090 4.090 21 Br 0.080 6.920 22 C -0.058 4.058 23 C -0.132 4.132 24 C -0.093 4.093 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.377 0.623 33 H -0.226 1.226 34 H -0.243 1.243 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.111 0.889 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -7.766 -4.927 9.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.156 0.844 7 C -0.124 4.124 8 C -0.759 4.759 9 H 0.181 0.819 10 S 2.691 3.309 11 O -0.936 6.936 12 O -0.910 6.910 13 O -0.618 6.618 14 C 0.051 3.949 15 C -0.099 4.099 16 C -0.061 4.061 17 C -0.177 4.177 18 O -0.334 6.334 19 Si 0.442 3.558 20 C -0.170 4.170 21 Br 0.166 6.834 22 C -0.078 4.078 23 C -0.152 4.152 24 C -0.131 4.131 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.225 0.775 33 H -0.148 1.148 34 H -0.166 1.166 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.130 0.870 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.422 -6.547 -4.460 8.629 hybrid contribution -1.590 -0.239 0.799 1.795 sum 1.832 -6.786 -3.661 7.925 Atomic orbital electron populations 1.23365 0.75615 1.04166 1.02926 1.86498 1.23979 1.32977 1.83741 1.23438 0.91488 0.81694 0.72524 1.90716 1.66826 1.36390 1.44534 1.22426 0.88001 1.00092 1.01025 0.84350 1.22625 0.93902 0.95974 0.99947 1.32283 1.08243 1.16505 1.18915 0.81933 1.05594 0.74459 0.75351 0.75533 1.93694 1.72283 1.46555 1.81072 1.93686 1.51176 1.84895 1.61221 1.85769 1.27956 1.85508 1.62577 1.18115 0.82460 0.97042 0.97249 1.21113 0.91579 0.97681 0.99553 1.20207 0.95102 0.95699 0.95102 1.25166 1.04744 0.94736 0.93057 1.86599 1.88302 1.39076 1.19447 0.93825 0.78738 0.87065 0.96210 1.21696 0.93694 0.98810 1.02771 1.96374 1.17289 1.95714 1.74037 1.20996 0.91457 0.97113 0.98184 1.21383 0.98183 0.98071 0.97602 1.22676 0.95513 0.98411 0.96471 0.91611 0.87695 0.91538 0.87484 0.87244 0.82427 0.84721 0.77501 1.14847 1.16572 0.82391 0.82696 0.87033 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.15 10.56 -39.26 -0.41 -0.57 16 3 C 0.47 0.47 7.48 36.01 0.27 0.74 16 4 O -0.50 -2.11 15.65 -18.75 -0.29 -2.40 16 5 C -0.10 0.24 4.26 -90.95 -0.39 -0.15 16 6 H 0.14 -0.73 8.14 -51.93 -0.42 -1.16 16 7 C -0.09 0.17 6.99 -25.92 -0.18 -0.01 16 8 C -0.65 1.95 4.03 -25.92 -0.10 1.84 16 9 H 0.16 -1.03 6.12 -51.93 -0.32 -1.35 16 10 S 2.60 3.24 5.14 -107.50 -0.55 2.69 16 11 O -0.94 -3.39 16.26 -67.04 -1.09 -4.48 16 12 O -0.91 -4.32 17.27 -67.03 -1.16 -5.48 16 13 O -0.66 -0.40 10.05 -51.81 -0.52 -0.92 16 14 C 0.09 -0.02 4.79 -39.22 -0.19 -0.21 16 15 C -0.08 -0.05 8.24 -39.44 -0.32 -0.38 16 16 C -0.06 0.02 5.13 -104.62 -0.54 -0.52 16 17 C -0.07 -0.02 2.84 36.00 0.10 0.09 16 18 O -0.53 -0.78 11.64 -35.23 -0.41 -1.19 16 19 Si 0.55 0.27 26.82 -169.99 -4.56 -4.29 16 20 C -0.09 0.19 5.81 -39.50 -0.23 -0.04 16 21 Br 0.08 -0.25 27.33 -68.01 -1.86 -2.11 16 22 C -0.06 0.23 9.78 -39.58 -0.39 -0.16 16 23 C -0.13 0.46 8.50 -39.44 -0.34 0.12 16 24 C -0.09 0.28 7.19 -25.92 -0.19 0.10 16 25 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 26 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 27 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 28 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 29 H 0.11 -0.04 7.39 -51.93 -0.38 -0.42 16 30 H 0.16 0.13 7.08 -52.49 -0.37 -0.24 16 31 H 0.14 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.38 -0.58 8.43 45.56 0.38 -0.19 16 33 H -0.23 -0.78 7.11 56.52 0.40 -0.37 16 34 H -0.24 -0.64 7.11 56.52 0.40 -0.24 16 35 H 0.16 -1.10 8.06 -52.49 -0.42 -1.53 16 36 H 0.16 -1.08 7.28 -52.48 -0.38 -1.46 16 37 H 0.11 -0.18 7.38 -51.93 -0.38 -0.57 16 38 H 0.11 -0.63 8.14 -51.93 -0.42 -1.05 16 LS Contribution 349.09 15.07 5.26 5.26 Total: 0.00 -11.68 349.09 -11.04 -22.72 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: -4.02 Total: -11.68 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.42 Total: 2.45 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -3.89 Total: -15.04 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: -4.56 Total: -4.29 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -0.55 Total: 2.69 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -1.86 Total: -2.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -11.68 -11.04 -22.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7425988_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.947 kcal (2) G-P(sol) polarization free energy of solvation -11.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds