Wall clock time and date at job start Mon Mar 8 2021 10:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99579 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99505 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47518 * 300.00344 * 6 4 3 8 8 C 1.53002 * 109.46783 * 60.00307 * 6 4 3 9 9 C 1.52997 * 109.46817 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47452 * 300.00239 * 9 8 6 11 11 F 1.39895 * 109.47472 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46864 * 299.99825 * 10 9 8 13 13 S 1.81401 * 109.47014 * 179.97438 * 12 10 9 14 14 O 1.42093 * 110.54364 * 291.62976 * 13 12 10 15 15 O 1.42103 * 110.54082 * 68.38116 * 13 12 10 16 16 O 1.52202 * 104.44714 * 180.02562 * 13 12 10 17 17 C 1.35912 * 113.99761 * 75.00371 * 16 13 12 18 18 C 1.38710 * 120.04963 * 89.99970 * 17 16 13 19 19 C 1.38157 * 119.95772 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.97920 * 180.02562 * 19 18 17 21 21 O 1.42906 * 109.47149 * 255.00524 * 20 19 18 22 22 Si 1.86298 * 109.47392 * 135.00278 * 20 19 18 23 23 C 1.38330 * 120.04468 * 0.02562 * 19 18 17 24 24 Br 1.89100 * 119.95218 * 180.02562 * 23 19 18 25 25 C 1.38358 * 120.09042 * 0.02562 * 23 19 18 26 26 C 1.38123 * 120.05025 * 359.71828 * 25 23 19 27 27 C 1.52999 * 109.47159 * 59.99536 * 10 9 8 28 28 C 1.52997 * 109.47317 * 300.00546 * 27 10 9 29 29 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 31 31 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 32 32 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 33 33 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 34 34 H 1.08993 * 109.47662 * 299.99813 * 8 6 4 35 35 H 1.09002 * 109.47075 * 60.00319 * 8 6 4 36 36 H 1.09002 * 109.47153 * 60.00231 * 9 8 6 37 37 H 1.09001 * 109.47289 * 180.02562 * 9 8 6 38 38 H 1.09001 * 109.47377 * 300.00173 * 12 10 9 39 39 H 1.09000 * 109.46866 * 60.00024 * 12 10 9 40 40 H 1.08005 * 120.01843 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.47096 * 14.99647 * 20 19 18 42 42 H 0.96703 * 113.99549 * 299.99394 * 21 20 19 43 43 H 1.48498 * 110.00218 * 180.02562 * 22 20 19 44 44 H 1.48501 * 109.99744 * 301.32077 * 22 20 19 45 45 H 1.08004 * 119.97450 * 180.02562 * 25 23 19 46 46 H 1.07988 * 120.02989 * 180.27892 * 26 25 23 47 47 H 1.08996 * 109.46929 * 179.97438 * 27 10 9 48 48 H 1.09002 * 109.46716 * 60.00455 * 27 10 9 49 49 H 1.09002 * 109.47153 * 299.99641 * 28 27 10 50 50 H 1.09001 * 109.46832 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0337 5.0987 1.2484 10 6 5.5616 5.0183 1.2494 11 9 6.0967 6.3108 1.2498 12 6 6.0322 4.2717 2.4993 13 16 7.8436 4.1757 2.5001 14 8 8.2983 3.3239 1.4576 15 8 8.4112 5.4640 2.6936 16 8 8.1833 3.4198 3.7768 17 6 7.9390 2.0845 3.7102 18 6 8.9293 1.2183 3.2707 19 6 8.6791 -0.1388 3.2042 20 6 9.7548 -1.0803 2.7274 21 8 9.4566 -1.5099 1.3975 22 14 9.8296 -2.5606 3.8561 23 6 7.4419 -0.6340 3.5751 24 35 7.1025 -2.4920 3.4838 25 6 6.4524 0.2284 4.0127 26 6 6.7000 1.5853 4.0857 27 6 6.0338 4.2706 0.0008 28 6 5.4485 2.8570 0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.3600 3.7421 1.2482 35 1 3.7841 3.1535 2.1391 36 1 3.6984 5.6306 0.3580 37 1 3.6977 5.6312 2.1382 38 1 5.6958 4.8043 3.3889 39 1 5.6153 3.2646 2.4994 40 1 9.8953 1.6046 2.9807 41 1 10.7167 -0.5675 2.7364 42 1 8.6129 -1.9751 1.3144 43 1 10.8871 -3.4965 3.3970 44 1 10.1076 -2.1243 5.2481 45 1 5.4872 -0.1603 4.3022 46 1 5.9289 2.2575 4.4316 47 1 7.1222 4.2137 0.0013 48 1 5.6985 4.8025 -0.8896 49 1 5.7838 2.3251 0.8915 50 1 5.7846 2.3245 -0.8887 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7425988_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:48:15 Heat of formation + Delta-G solvation = -240.213264 kcal Electronic energy + Delta-G solvation = -42065.682145 eV Core-core repulsion = 36534.349318 eV Total energy + Delta-G solvation = -5531.332827 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.07568 -42.56080 -41.77462 -40.21348 -39.60362 -38.57939 -37.73569 -37.58391 -37.47884 -33.88605 -33.57818 -33.12375 -32.36363 -32.06771 -30.63335 -29.30282 -27.22588 -25.35753 -24.82712 -24.12692 -23.74760 -23.46787 -21.87215 -21.62768 -20.48563 -19.67248 -19.25639 -18.83131 -18.66317 -18.26566 -17.84581 -17.66891 -17.58984 -17.38398 -17.22250 -16.68807 -16.59115 -16.13128 -16.04352 -15.65665 -15.35819 -15.27299 -15.11769 -14.89068 -14.77054 -14.51853 -14.42640 -14.30823 -14.16498 -14.07484 -13.86095 -13.67073 -13.57646 -13.49945 -13.45152 -13.26900 -13.13095 -12.99877 -12.91056 -12.79884 -12.77555 -12.60555 -12.43820 -12.40327 -12.27336 -12.14079 -12.11369 -11.93802 -11.56434 -11.43453 -11.29144 -11.12478 -10.82671 -10.32092 -10.15375 -4.84755 -1.43967 -0.55460 -0.24989 -0.09060 0.71312 0.99020 1.18573 1.41455 1.67214 1.82009 1.95488 2.23620 2.58787 2.79617 3.05572 3.09658 3.14604 3.26108 3.36550 3.37635 3.42332 3.55885 3.70162 3.72139 3.77855 3.83405 4.00124 4.05601 4.07656 4.11312 4.13291 4.19596 4.22579 4.25323 4.31027 4.41741 4.47441 4.57872 4.61201 4.67992 4.68680 4.77525 4.82332 4.89161 4.94401 4.95478 4.97893 5.07442 5.16204 5.21386 5.24036 5.25650 5.53053 6.38862 6.75122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.466 3.534 5 O -0.530 6.530 6 C -0.083 4.083 7 H 0.133 0.867 8 C -0.111 4.111 9 C -0.122 4.122 10 C 0.130 3.870 11 F -0.210 7.210 12 C -0.673 4.673 13 S 2.581 3.419 14 O -0.958 6.958 15 O -0.957 6.957 16 O -0.665 6.665 17 C 0.068 3.932 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.071 4.071 21 O -0.539 6.539 22 Si 0.590 3.410 23 C -0.091 4.091 24 Br 0.106 6.894 25 C -0.046 4.046 26 C -0.118 4.118 27 C -0.176 4.176 28 C -0.099 4.099 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.385 0.615 43 H -0.265 1.265 44 H -0.268 1.268 45 H 0.197 0.803 46 H 0.198 0.802 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.074 0.926 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 -2.650 2.274 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.274 6.274 4 C 0.310 3.690 5 O -0.419 6.419 6 C -0.102 4.102 7 H 0.151 0.849 8 C -0.148 4.148 9 C -0.160 4.160 10 C 0.111 3.889 11 F -0.191 7.191 12 C -0.802 4.802 13 S 2.680 3.320 14 O -0.956 6.956 15 O -0.956 6.956 16 O -0.624 6.624 17 C 0.026 3.974 18 C -0.111 4.111 19 C -0.075 4.075 20 C -0.181 4.181 21 O -0.347 6.347 22 Si 0.491 3.509 23 C -0.171 4.171 24 Br 0.191 6.809 25 C -0.066 4.066 26 C -0.138 4.138 27 C -0.214 4.214 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.210 0.790 39 H 0.200 0.800 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.234 0.766 43 H -0.190 1.190 44 H -0.193 1.193 45 H 0.214 0.786 46 H 0.215 0.785 47 H 0.096 0.904 48 H 0.131 0.869 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.240 -3.611 2.652 13.034 hybrid contribution 1.033 1.116 -0.274 1.546 sum -11.207 -2.495 2.378 11.725 Atomic orbital electron populations 1.21824 0.91128 1.04061 1.03674 1.23225 0.96532 0.79400 1.02652 1.86511 1.24061 1.33343 1.83499 1.23986 0.80672 0.92818 0.71516 1.90698 1.60978 1.44064 1.46167 1.21285 0.95246 0.89443 1.04255 0.84909 1.21656 1.03348 0.93904 0.95870 1.22082 0.88443 0.98695 1.06765 1.20762 0.98120 0.77572 0.92492 1.92976 1.87997 1.40639 1.97443 1.31564 1.24763 1.14197 1.09695 1.05786 0.79422 0.73913 0.72857 1.93667 1.79555 1.65592 1.56789 1.93638 1.76612 1.41429 1.83873 1.85758 1.86893 1.26935 1.62811 1.18468 0.96550 0.77210 1.05140 1.21241 1.00358 0.92099 0.97448 1.20065 0.95155 0.94151 0.98156 1.25035 0.98124 1.03342 0.91595 1.86558 1.44576 1.78074 1.25461 0.93134 0.98910 0.81856 0.77040 1.22035 0.96721 0.91813 1.06571 1.96365 1.83007 1.04692 1.96821 1.21477 0.99822 0.90810 0.94445 1.21913 0.95399 0.97443 0.99069 1.22652 1.02717 0.97235 0.98766 1.21363 0.92479 0.95065 1.04731 0.88916 0.90938 0.91702 0.91880 0.90609 0.87345 0.89300 0.88131 0.87460 0.78974 0.79964 0.84071 0.86892 0.76551 1.18984 1.19320 0.78577 0.78461 0.90435 0.86877 0.90707 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.23 10.29 71.98 0.74 1.97 16 2 C 0.06 -0.27 6.19 71.98 0.45 0.18 16 3 O -0.36 1.20 10.12 -51.40 -0.52 0.68 16 4 C 0.47 -1.12 7.25 71.24 0.52 -0.60 16 5 O -0.53 -1.93 15.73 21.99 0.35 -1.59 16 6 C -0.08 0.62 2.63 -11.54 -0.03 0.59 16 7 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 8 C -0.11 1.34 4.86 30.59 0.15 1.49 16 9 C -0.12 1.29 5.19 30.60 0.16 1.44 16 10 C 0.13 -0.51 1.10 -10.79 -0.01 -0.52 16 11 F -0.21 -0.70 16.08 44.97 0.72 0.03 16 12 C -0.67 4.34 4.06 71.98 0.29 4.63 16 13 S 2.58 12.39 4.51 -56.49 -0.25 12.14 16 14 O -0.96 -8.12 13.88 -118.57 -1.65 -9.76 16 15 O -0.96 -13.35 17.61 -118.57 -2.09 -15.44 16 16 O -0.66 -2.26 10.05 -61.65 -0.62 -2.88 16 17 C 0.07 0.06 4.79 22.51 0.11 0.17 16 18 C -0.09 -0.39 8.67 22.36 0.19 -0.20 16 19 C -0.07 -0.17 4.78 -19.86 -0.09 -0.27 16 20 C -0.07 -0.33 2.79 71.23 0.20 -0.13 16 21 O -0.54 -3.25 12.88 -148.98 -1.92 -5.17 16 22 Si 0.59 2.66 26.94 68.60 1.85 4.51 16 23 C -0.09 0.29 5.78 22.32 0.13 0.42 16 24 Br 0.11 -0.63 26.06 -20.37 -0.53 -1.16 16 25 C -0.05 0.40 9.78 22.27 0.22 0.62 16 26 C -0.12 0.91 8.46 22.37 0.19 1.10 16 27 C -0.18 0.40 4.71 30.59 0.14 0.55 16 28 C -0.10 0.34 4.22 30.59 0.13 0.46 16 29 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.06 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.06 -0.20 8.13 -2.39 -0.02 -0.22 16 33 H 0.08 -0.44 8.13 -2.39 -0.02 -0.46 16 34 H 0.11 -1.52 8.11 -2.39 -0.02 -1.53 16 35 H 0.09 -1.33 6.43 -2.39 -0.02 -1.35 16 36 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 38 H 0.19 -2.58 8.14 -2.39 -0.02 -2.60 16 39 H 0.18 -2.26 3.28 -2.39 -0.01 -2.27 16 40 H 0.14 0.76 8.00 -2.91 -0.02 0.73 16 41 H 0.11 0.60 7.77 -2.38 -0.02 0.58 16 42 H 0.38 -0.15 7.30 -74.05 -0.54 -0.69 16 43 H -0.26 -2.93 7.11 99.48 0.71 -2.23 16 44 H -0.27 -2.45 7.11 99.48 0.71 -1.75 16 45 H 0.20 -3.24 8.06 -2.91 -0.02 -3.26 16 46 H 0.20 -3.38 7.52 -2.92 -0.02 -3.41 16 47 H 0.08 0.19 5.46 -2.39 -0.01 0.18 16 48 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H 0.07 -0.26 6.39 -2.39 -0.02 -0.28 16 50 H 0.08 -0.03 8.10 -2.39 -0.02 -0.05 16 Total: 0.00 -31.37 421.45 -0.68 -32.05 By element: Atomic # 1 Polarization: -25.83 SS G_CDS: 0.50 Total: -25.33 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 3.48 Total: 11.90 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -6.45 Total: -34.15 kcal Atomic # 9 Polarization: -0.70 SS G_CDS: 0.72 Total: 0.03 kcal Atomic # 14 Polarization: 2.66 SS G_CDS: 1.85 Total: 4.51 kcal Atomic # 16 Polarization: 12.39 SS G_CDS: -0.25 Total: 12.14 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -0.53 Total: -1.16 kcal Total: -31.37 -0.68 -32.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7425988_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.159 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds