Wall clock time and date at job start Mon Mar 8 2021 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47108 * 2 1 4 4 C 1.86296 * 109.47339 * 239.99905 * 2 1 3 5 5 C 1.86305 * 109.47029 * 119.99854 * 2 1 3 6 6 C 1.52999 * 109.47127 * 59.99936 * 5 2 1 7 7 C 1.52994 * 109.47404 * 179.97438 * 6 5 2 8 8 S 1.81397 * 109.47517 * 180.02562 * 7 6 5 9 9 O 1.42095 * 110.54497 * 68.37593 * 8 7 6 10 10 O 1.42101 * 110.54152 * 291.62407 * 8 7 6 11 11 O 1.52198 * 104.45267 * 180.02562 * 8 7 6 12 12 C 1.35953 * 114.00097 * 74.99795 * 11 8 7 13 13 C 1.38621 * 120.06403 * 90.00505 * 12 11 8 14 14 C 1.38221 * 119.96962 * 179.97438 * 13 12 11 15 15 C 1.38223 * 120.09462 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93324 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38297 * 120.12913 * 0.22850 * 15 14 13 23 23 C 1.38296 * 120.02466 * 359.49524 * 22 15 14 24 24 F 1.35095 * 120.04347 * 180.25545 * 23 22 15 25 25 H 1.08997 * 109.47345 * 299.99983 * 1 2 3 26 26 H 1.08996 * 109.46801 * 60.00240 * 1 2 3 27 27 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47139 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47093 * 299.99581 * 3 2 1 30 30 H 1.08997 * 109.47004 * 59.99808 * 3 2 1 31 31 H 1.09000 * 109.47082 * 300.00146 * 4 2 1 32 32 H 1.08995 * 109.47420 * 59.99616 * 4 2 1 33 33 H 1.09001 * 109.47586 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47190 * 300.00258 * 5 2 1 35 35 H 1.08990 * 109.47207 * 180.02562 * 5 2 1 36 36 H 1.09009 * 109.47201 * 59.99931 * 6 5 2 37 37 H 1.09003 * 109.47250 * 300.00475 * 6 5 2 38 38 H 1.09007 * 109.47020 * 60.00383 * 7 6 5 39 39 H 1.09003 * 109.47365 * 300.00478 * 7 6 5 40 40 H 1.07999 * 120.01115 * 359.95282 * 13 12 11 41 41 H 1.07997 * 119.95705 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 43 43 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 44 44 H 1.07992 * 119.98853 * 179.74882 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4844 -3.0421 2.7701 8 16 1.8804 -4.7526 2.7698 9 8 2.4930 -5.4976 1.7264 10 8 0.4730 -4.7844 2.9639 11 8 2.4485 -5.3563 4.0462 12 6 1.8166 -4.9495 5.1792 13 6 0.7303 -5.6622 5.6625 14 6 0.0897 -5.2473 6.8149 15 6 0.5303 -4.1221 7.4860 16 6 -0.1713 -3.6726 8.7418 17 8 -1.5395 -3.3855 8.4462 18 14 0.6571 -2.1396 9.4009 19 1 0.5868 -1.0618 8.3818 20 1 -0.0345 -1.6962 10.6380 21 1 2.0790 -2.4384 9.7082 22 6 1.6104 -3.4051 7.0045 23 6 2.2587 -3.8189 5.8551 24 9 3.3171 -3.1217 5.3873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7564 0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1206 2.2702 0.8899 31 1 2.1207 -1.9059 -1.5211 32 1 2.1207 -0.3645 -2.4111 33 1 3.5741 -0.8786 -1.5209 34 1 2.1206 -0.3644 2.4112 35 1 3.5739 -0.8778 1.5215 36 1 2.3373 -2.8346 0.6312 37 1 0.8839 -2.3207 1.5211 38 1 2.1214 -2.5284 3.6604 39 1 3.5744 -3.0421 2.7698 40 1 0.3845 -6.5411 5.1387 41 1 -0.7569 -5.8024 7.1910 42 1 -0.1193 -4.4635 9.4900 43 1 -1.6617 -2.6894 7.7863 44 1 1.9502 -2.5240 7.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_7834718_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:50:37 Heat of formation + Delta-G solvation = -201.451578 kcal Electronic energy + Delta-G solvation = -27642.696107 eV Core-core repulsion = 23533.084915 eV Total energy + Delta-G solvation = -4109.611191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.49289 -42.22388 -40.11679 -38.30828 -37.58525 -37.20261 -35.99772 -32.72959 -31.95507 -29.77313 -28.55700 -28.46322 -28.38981 -27.31405 -24.70247 -23.86781 -23.01201 -21.68804 -19.80482 -19.24514 -19.00807 -18.73182 -17.70505 -17.48170 -17.13325 -16.92454 -16.49048 -16.35862 -16.14451 -15.72778 -15.31330 -14.95415 -14.87944 -14.38606 -14.24944 -14.22986 -14.16017 -14.08218 -13.82362 -13.69338 -13.64020 -13.36678 -13.30082 -13.28467 -13.19395 -13.13923 -13.12071 -13.09028 -12.83777 -12.50234 -12.32388 -12.02507 -12.01077 -11.90861 -10.88575 -10.85159 -10.78429 -10.61765 -10.44655 -10.14430 -1.21591 -0.42363 -0.34847 0.85111 0.88404 1.22333 1.29453 1.67749 1.71583 1.79623 1.81127 1.91057 2.41634 2.52857 2.57896 2.79991 3.01298 3.13210 3.38791 3.41375 3.53100 3.65192 3.70334 3.78976 3.97616 4.18484 4.26107 4.29153 4.44334 4.48620 4.52081 4.61673 4.66582 4.67991 4.71088 4.71782 4.73277 4.74360 4.78292 4.86846 4.91128 5.22204 5.31316 5.42331 5.50131 5.52409 6.28877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.002 2.998 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.406 4.406 6 C -0.101 4.101 7 C -0.644 4.644 8 S 2.579 3.421 9 O -0.919 6.919 10 O -0.946 6.946 11 O -0.657 6.657 12 C 0.039 3.961 13 C -0.059 4.059 14 C -0.079 4.079 15 C -0.075 4.075 16 C -0.082 4.082 17 O -0.531 6.531 18 Si 0.939 3.061 19 H -0.247 1.247 20 H -0.245 1.245 21 H -0.246 1.246 22 C -0.145 4.145 23 C 0.098 3.902 24 F -0.121 7.121 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.380 0.620 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 3.502 3.411 4.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.199 2.801 3 C -0.556 4.556 4 C -0.561 4.561 5 C -0.491 4.491 6 C -0.139 4.139 7 C -0.772 4.772 8 S 2.676 3.324 9 O -0.917 6.917 10 O -0.944 6.944 11 O -0.615 6.615 12 C -0.004 4.004 13 C -0.079 4.079 14 C -0.097 4.097 15 C -0.077 4.077 16 C -0.193 4.193 17 O -0.337 6.337 18 Si 0.761 3.239 19 H -0.170 1.170 20 H -0.168 1.168 21 H -0.169 1.169 22 C -0.164 4.164 23 C 0.076 3.924 24 F -0.099 7.099 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.148 0.852 43 H 0.228 0.772 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.727 3.039 3.947 5.034 hybrid contribution 0.729 0.651 -0.725 1.217 sum 0.002 3.690 3.222 4.899 Atomic orbital electron populations 1.26166 1.20644 1.04610 1.04580 0.79327 0.67284 0.67030 0.66471 1.26100 1.06253 1.18806 1.04490 1.26174 1.06388 1.08177 1.15343 1.26171 1.06348 1.00355 1.16245 1.20986 1.01589 0.97069 0.94269 1.30978 1.13958 1.23629 1.08591 1.06034 0.74819 0.77588 0.73982 1.93668 1.77546 1.67818 1.52686 1.93659 1.31133 1.86281 1.83325 1.85780 1.70274 1.76088 1.29367 1.18074 0.96882 0.96718 0.88681 1.21401 0.91588 0.99216 0.95646 1.21114 0.99658 0.95599 0.93376 1.20489 0.94649 0.94978 0.97535 1.25058 0.87239 1.10569 0.96441 1.86562 1.21782 1.60925 1.64398 0.85805 0.79912 0.76569 0.81637 1.17018 1.16830 1.16940 1.21022 0.97533 1.02242 0.95607 1.17645 0.87628 0.91481 0.95613 1.91581 1.53317 1.77408 1.87590 0.91182 0.91092 0.91107 0.91246 0.91135 0.91279 0.91102 0.91096 0.91135 0.90099 0.89963 0.89870 0.89913 0.84856 0.83952 0.82553 0.82674 0.85191 0.77205 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.76 8.65 101.05 0.87 1.63 16 2 Si 1.00 -2.85 12.19 -169.99 -2.07 -4.92 16 3 C -0.45 0.78 8.65 101.05 0.87 1.66 16 4 C -0.45 0.64 8.65 101.05 0.87 1.51 16 5 C -0.41 0.89 4.45 37.16 0.17 1.05 16 6 C -0.10 0.11 4.59 -26.73 -0.12 -0.01 16 7 C -0.64 0.40 4.64 37.15 0.17 0.57 16 8 S 2.58 5.94 5.17 -107.50 -0.56 5.38 16 9 O -0.92 -5.14 18.09 -67.03 -1.21 -6.35 16 10 O -0.95 -3.35 16.26 -67.04 -1.09 -4.44 16 11 O -0.66 -1.53 9.92 -51.92 -0.51 -2.05 16 12 C 0.04 0.05 4.80 -39.18 -0.19 -0.14 16 13 C -0.06 0.01 9.05 -39.45 -0.36 -0.34 16 14 C -0.08 0.16 9.60 -39.59 -0.38 -0.22 16 15 C -0.08 0.17 5.39 -104.60 -0.56 -0.39 16 16 C -0.08 0.28 2.82 36.01 0.10 0.38 16 17 O -0.53 1.35 12.77 -35.23 -0.45 0.90 16 18 Si 0.94 -2.78 25.07 -169.99 -4.26 -7.04 16 19 H -0.25 0.71 7.11 56.52 0.40 1.11 16 20 H -0.24 0.32 7.11 56.52 0.40 0.72 16 21 H -0.25 0.58 7.11 56.52 0.40 0.98 16 22 C -0.15 0.23 8.64 -39.54 -0.34 -0.11 16 23 C 0.10 0.01 6.33 -39.30 -0.25 -0.24 16 24 F -0.12 -0.03 14.68 2.25 0.03 0.01 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 35 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 36 H 0.08 -0.15 7.79 -51.92 -0.40 -0.55 16 37 H 0.08 -0.18 7.79 -51.93 -0.40 -0.58 16 38 H 0.13 -0.25 6.09 -51.92 -0.32 -0.57 16 39 H 0.14 -0.27 8.14 -51.92 -0.42 -0.69 16 40 H 0.16 -0.22 8.06 -52.49 -0.42 -0.65 16 41 H 0.16 -0.58 8.06 -52.49 -0.42 -1.01 16 42 H 0.13 -0.60 7.96 -51.93 -0.41 -1.01 16 43 H 0.38 -2.13 8.70 45.56 0.40 -1.74 16 44 H 0.15 -0.47 4.88 -52.49 -0.26 -0.73 16 LS Contribution 376.47 15.07 5.67 5.67 Total: 0.00 -8.54 376.47 -9.58 -18.12 By element: Atomic # 1 Polarization: -4.63 SS G_CDS: -5.99 Total: -10.63 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 0.86 Total: 5.34 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -3.27 Total: -11.94 kcal Atomic # 9 Polarization: -0.03 SS G_CDS: 0.03 Total: 0.01 kcal Atomic # 14 Polarization: -5.63 SS G_CDS: -6.33 Total: -11.96 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -0.56 Total: 5.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -8.54 -9.58 -18.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.327 kcal (2) G-P(sol) polarization free energy of solvation -8.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds