Wall clock time and date at job start Mon Mar 8 2021 12:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86295 * 109.47108 * 2 1 4 4 C 1.86296 * 109.47339 * 239.99905 * 2 1 3 5 5 C 1.86305 * 109.47029 * 119.99854 * 2 1 3 6 6 C 1.52999 * 109.47127 * 59.99936 * 5 2 1 7 7 C 1.52994 * 109.47404 * 179.97438 * 6 5 2 8 8 S 1.81397 * 109.47517 * 180.02562 * 7 6 5 9 9 O 1.42095 * 110.54497 * 68.37593 * 8 7 6 10 10 O 1.42101 * 110.54152 * 291.62407 * 8 7 6 11 11 O 1.52198 * 104.45267 * 180.02562 * 8 7 6 12 12 C 1.35953 * 114.00097 * 74.99795 * 11 8 7 13 13 C 1.38621 * 120.06403 * 90.00505 * 12 11 8 14 14 C 1.38221 * 119.96962 * 179.97438 * 13 12 11 15 15 C 1.38223 * 120.09462 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93324 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 20 20 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 22 22 C 1.38297 * 120.12913 * 0.22850 * 15 14 13 23 23 C 1.38296 * 120.02466 * 359.49524 * 22 15 14 24 24 F 1.35095 * 120.04347 * 180.25545 * 23 22 15 25 25 H 1.08997 * 109.47345 * 299.99983 * 1 2 3 26 26 H 1.08996 * 109.46801 * 60.00240 * 1 2 3 27 27 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47139 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47093 * 299.99581 * 3 2 1 30 30 H 1.08997 * 109.47004 * 59.99808 * 3 2 1 31 31 H 1.09000 * 109.47082 * 300.00146 * 4 2 1 32 32 H 1.08995 * 109.47420 * 59.99616 * 4 2 1 33 33 H 1.09001 * 109.47586 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47190 * 300.00258 * 5 2 1 35 35 H 1.08990 * 109.47207 * 180.02562 * 5 2 1 36 36 H 1.09009 * 109.47201 * 59.99931 * 6 5 2 37 37 H 1.09003 * 109.47250 * 300.00475 * 6 5 2 38 38 H 1.09007 * 109.47020 * 60.00383 * 7 6 5 39 39 H 1.09003 * 109.47365 * 300.00478 * 7 6 5 40 40 H 1.07999 * 120.01115 * 359.95282 * 13 12 11 41 41 H 1.07997 * 119.95705 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 43 43 H 0.96698 * 114.00355 * 299.99977 * 17 16 15 44 44 H 1.07992 * 119.98853 * 179.74882 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 6 2.4844 -3.0421 2.7701 8 16 1.8804 -4.7526 2.7698 9 8 2.4930 -5.4976 1.7264 10 8 0.4730 -4.7844 2.9639 11 8 2.4485 -5.3563 4.0462 12 6 1.8166 -4.9495 5.1792 13 6 0.7303 -5.6622 5.6625 14 6 0.0897 -5.2473 6.8149 15 6 0.5303 -4.1221 7.4860 16 6 -0.1713 -3.6726 8.7418 17 8 -1.5395 -3.3855 8.4462 18 14 0.6571 -2.1396 9.4009 19 1 0.5868 -1.0618 8.3818 20 1 -0.0345 -1.6962 10.6380 21 1 2.0790 -2.4384 9.7082 22 6 1.6104 -3.4051 7.0045 23 6 2.2587 -3.8189 5.8551 24 9 3.3171 -3.1217 5.3873 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5740 1.7564 0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1206 2.2702 0.8899 31 1 2.1207 -1.9059 -1.5211 32 1 2.1207 -0.3645 -2.4111 33 1 3.5741 -0.8786 -1.5209 34 1 2.1206 -0.3644 2.4112 35 1 3.5739 -0.8778 1.5215 36 1 2.3373 -2.8346 0.6312 37 1 0.8839 -2.3207 1.5211 38 1 2.1214 -2.5284 3.6604 39 1 3.5744 -3.0421 2.7698 40 1 0.3845 -6.5411 5.1387 41 1 -0.7569 -5.8024 7.1910 42 1 -0.1193 -4.4635 9.4900 43 1 -1.6617 -2.6894 7.7863 44 1 1.9502 -2.5240 7.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7834718_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:50:36 Heat of formation + Delta-G solvation = -198.390547 kcal Electronic energy + Delta-G solvation = -27642.563370 eV Core-core repulsion = 23533.084915 eV Total energy + Delta-G solvation = -4109.478455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.45191 -42.24250 -40.02164 -38.52998 -37.44970 -37.36086 -35.89874 -32.61499 -31.84546 -29.63323 -28.42502 -28.31339 -28.25635 -27.16749 -24.59702 -23.80248 -22.89033 -21.67448 -19.88285 -19.17900 -19.04038 -18.73972 -17.71223 -17.33711 -17.09580 -16.92301 -16.33068 -16.11564 -16.05138 -15.74453 -15.27360 -14.83175 -14.77504 -14.29112 -14.23461 -14.09848 -14.04084 -13.97491 -13.76024 -13.60421 -13.57478 -13.46456 -13.45373 -13.20126 -13.15643 -13.06471 -13.00316 -12.99119 -12.71193 -12.29897 -12.10876 -11.91676 -11.85987 -11.80810 -10.72686 -10.69451 -10.58896 -10.45748 -10.33278 -10.04708 -1.27640 -0.38980 -0.24145 0.78568 1.13297 1.46488 1.51732 1.88676 1.94188 1.99864 2.00546 2.02545 2.35865 2.57635 2.70474 2.72048 3.14581 3.36497 3.49068 3.59040 3.60349 3.77586 3.81557 3.91301 4.12108 4.33735 4.40690 4.46306 4.58375 4.61683 4.66229 4.75023 4.80984 4.82593 4.85506 4.85931 4.87167 4.87855 4.91412 5.04778 5.04977 5.42399 5.42892 5.58477 5.65436 5.66723 6.69941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 Si 1.070 2.930 3 C -0.463 4.463 4 C -0.474 4.474 5 C -0.413 4.413 6 C -0.118 4.118 7 C -0.628 4.628 8 S 2.578 3.422 9 O -0.963 6.963 10 O -0.965 6.965 11 O -0.666 6.666 12 C 0.013 3.987 13 C -0.072 4.072 14 C -0.073 4.073 15 C -0.067 4.067 16 C -0.075 4.075 17 O -0.544 6.544 18 Si 0.962 3.038 19 H -0.245 1.245 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.144 4.144 23 C 0.089 3.911 24 F -0.123 7.123 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.145 0.855 43 H 0.393 0.607 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 4.460 4.527 6.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.576 4.576 2 Si 1.262 2.738 3 C -0.569 4.569 4 C -0.580 4.580 5 C -0.498 4.498 6 C -0.157 4.157 7 C -0.758 4.758 8 S 2.678 3.322 9 O -0.962 6.962 10 O -0.964 6.964 11 O -0.625 6.625 12 C -0.030 4.030 13 C -0.092 4.092 14 C -0.091 4.091 15 C -0.069 4.069 16 C -0.185 4.185 17 O -0.351 6.351 18 Si 0.786 3.214 19 H -0.169 1.169 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.163 4.163 23 C 0.068 3.932 24 F -0.102 7.102 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.192 0.808 42 H 0.163 0.837 43 H 0.243 0.757 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.985 3.970 5.034 6.486 hybrid contribution 0.779 0.414 -1.005 1.337 sum -0.206 4.384 4.029 5.958 Atomic orbital electron populations 1.26374 1.22132 1.04508 1.04605 0.78284 0.65422 0.65333 0.64758 1.26267 1.06377 1.19834 1.04449 1.26434 1.06545 1.08399 1.16608 1.26282 1.06920 0.99441 1.17153 1.21234 1.02472 0.97853 0.94104 1.30875 1.14818 1.20373 1.09767 1.05956 0.74278 0.78625 0.73325 1.93605 1.78079 1.69949 1.54534 1.93614 1.32304 1.87041 1.83431 1.85738 1.70330 1.76624 1.29758 1.18423 0.97941 0.97870 0.88748 1.21619 0.91610 0.99522 0.96434 1.21343 0.99691 0.95581 0.92493 1.20660 0.94145 0.94479 0.97604 1.25047 0.86809 1.10712 0.95973 1.86541 1.21959 1.61632 1.65002 0.85491 0.78975 0.76618 0.80348 1.16855 1.19471 1.17681 1.21240 0.97399 1.02652 0.94960 1.17761 0.87893 0.91408 0.96183 1.91565 1.53503 1.77394 1.87728 0.90865 0.91399 0.91289 0.91251 0.91484 0.91043 0.91409 0.91387 0.91182 0.89045 0.89306 0.89532 0.89021 0.83239 0.82514 0.82235 0.80757 0.83714 0.75741 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.66 8.65 113.37 0.98 2.64 16 2 Si 1.07 -6.60 12.19 68.60 0.84 -5.77 16 3 C -0.46 1.86 8.65 113.37 0.98 2.84 16 4 C -0.47 1.19 8.65 113.37 0.98 2.17 16 5 C -0.41 2.27 4.45 71.98 0.32 2.59 16 6 C -0.12 0.29 4.59 30.59 0.14 0.43 16 7 C -0.63 0.86 4.64 71.98 0.33 1.20 16 8 S 2.58 15.42 5.17 -56.49 -0.29 15.12 16 9 O -0.96 -12.90 18.09 -118.57 -2.15 -15.04 16 10 O -0.97 -8.17 16.26 -118.57 -1.93 -10.10 16 11 O -0.67 -4.07 9.92 -62.11 -0.62 -4.69 16 12 C 0.01 0.04 4.80 22.53 0.11 0.15 16 13 C -0.07 0.01 9.05 22.36 0.20 0.21 16 14 C -0.07 0.35 9.60 22.26 0.21 0.56 16 15 C -0.07 0.39 5.39 -19.85 -0.11 0.28 16 16 C -0.07 0.61 2.82 71.24 0.20 0.82 16 17 O -0.54 3.59 12.77 -148.98 -1.90 1.69 16 18 Si 0.96 -6.59 25.07 68.60 1.72 -4.87 16 19 H -0.25 1.74 7.11 99.48 0.71 2.45 16 20 H -0.27 0.70 7.11 99.48 0.71 1.40 16 21 H -0.25 1.42 7.11 99.48 0.71 2.13 16 22 C -0.14 0.59 8.64 22.30 0.19 0.78 16 23 C 0.09 0.01 6.33 22.45 0.14 0.15 16 24 F -0.12 -0.02 14.68 44.97 0.66 0.64 16 25 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 32 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.09 -0.66 7.96 -2.39 -0.02 -0.68 16 35 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 36 H 0.09 -0.28 7.79 -2.38 -0.02 -0.30 16 37 H 0.09 -0.41 7.79 -2.39 -0.02 -0.43 16 38 H 0.15 -0.68 6.09 -2.39 -0.01 -0.69 16 39 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 41 H 0.18 -1.57 8.06 -2.91 -0.02 -1.59 16 42 H 0.15 -1.60 7.96 -2.39 -0.02 -1.62 16 43 H 0.39 -4.97 8.70 -74.06 -0.64 -5.61 16 44 H 0.16 -1.26 4.88 -2.91 -0.01 -1.27 16 Total: 0.00 -20.22 376.47 2.14 -18.08 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: 1.12 Total: -9.90 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.69 Total: 14.83 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -6.59 Total: -28.14 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.66 Total: 0.64 kcal Atomic # 14 Polarization: -13.20 SS G_CDS: 2.56 Total: -10.64 kcal Atomic # 16 Polarization: 15.42 SS G_CDS: -0.29 Total: 15.12 kcal Total: -20.22 2.14 -18.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.307 kcal (2) G-P(sol) polarization free energy of solvation -20.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds