Wall clock time and date at job start Mon Mar 8 2021 10:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46770 * 2 1 4 4 C 1.34234 * 116.99720 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00165 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.85405 * 311.20083 * 6 4 3 8 8 C 1.53965 * 113.74410 * 82.40161 * 6 4 3 9 9 C 1.53780 * 87.01838 * 139.94368 * 8 6 4 10 10 F 1.39905 * 113.61457 * 220.04840 * 9 8 6 11 11 C 1.52999 * 113.61453 * 89.23383 * 9 8 6 12 12 S 1.81397 * 109.47236 * 80.85763 * 11 9 8 13 13 O 1.42103 * 110.54477 * 291.62670 * 12 11 9 14 14 O 1.42107 * 110.54042 * 68.37705 * 12 11 9 15 15 O 1.52202 * 104.45174 * 179.97438 * 12 11 9 16 16 C 1.35961 * 113.99784 * 75.00132 * 15 12 11 17 17 C 1.38906 * 120.06186 * 90.00031 * 16 15 12 18 18 F 1.35101 * 120.04725 * 0.02562 * 17 16 15 19 19 C 1.38334 * 119.90471 * 179.97438 * 17 16 15 20 20 C 1.38259 * 120.02993 * 359.97438 * 19 17 16 21 21 C 1.50697 * 119.93633 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47102 * 65.00356 * 21 20 19 23 23 Si 1.86296 * 109.46974 * 185.00170 * 21 20 19 24 24 C 1.38264 * 120.12252 * 0.02883 * 20 19 17 25 25 C 1.38176 * 120.10000 * 359.73763 * 24 20 19 26 26 C 1.53781 * 87.17569 * 334.64054 * 9 8 6 27 27 H 1.09000 * 109.47417 * 300.00025 * 1 2 3 28 28 H 1.09004 * 109.47196 * 59.99977 * 1 2 3 29 29 H 1.08999 * 109.47301 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46975 * 240.00201 * 2 1 3 31 31 H 1.08995 * 109.46977 * 120.00208 * 2 1 3 32 32 H 1.09000 * 113.60928 * 25.42425 * 8 6 4 33 33 H 1.08995 * 113.66684 * 254.47608 * 8 6 4 34 34 H 1.09002 * 109.47442 * 200.86227 * 11 9 8 35 35 H 1.09008 * 109.46889 * 320.85840 * 11 9 8 36 36 H 1.07995 * 119.98195 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.46947 * 305.00309 * 21 20 19 38 38 H 0.96699 * 114.00549 * 59.99529 * 22 21 20 39 39 H 1.48501 * 110.00087 * 58.68451 * 23 21 20 40 40 H 1.48505 * 110.00323 * 179.97438 * 23 21 20 41 41 H 1.07997 * 119.94657 * 180.02562 * 24 20 19 42 42 H 1.07998 * 120.02053 * 180.25840 * 25 24 20 43 43 H 1.09001 * 113.61695 * 139.93767 * 26 9 8 44 44 H 1.09002 * 113.61213 * 270.75827 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.4714 3.5817 -0.7546 8 6 3.9850 3.5811 1.3983 9 6 5.3561 4.1436 0.9879 10 9 6.3087 4.1007 2.0117 11 6 5.2783 5.5109 0.3058 12 16 5.1161 6.8065 1.5650 13 8 3.8507 6.7231 2.2062 14 8 6.3142 6.9203 2.3206 15 8 5.0499 8.1027 0.7700 16 6 3.8573 8.3118 0.1516 17 6 2.8429 8.9958 0.8093 18 9 3.0400 9.4548 2.0646 19 6 1.6309 9.2072 0.1768 20 6 1.4302 8.7387 -1.1084 21 6 0.1092 8.9707 -1.7957 22 8 -0.0809 10.3718 -2.0017 23 14 0.1024 8.0947 -3.4398 24 6 2.4391 8.0577 -1.7642 25 6 3.6534 7.8478 -1.1391 26 6 5.4582 2.9681 0.0017 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0358 2.8564 2.2109 33 1 3.2289 4.3490 1.5614 34 1 6.1855 5.6797 -0.2744 35 1 4.4131 5.5377 -0.3567 36 1 0.8415 9.7391 0.6869 37 1 -0.6972 8.5822 -1.1736 38 1 0.6015 10.7852 -2.5481 39 1 0.3310 6.6408 -3.2416 40 1 -1.1952 8.3151 -4.1275 41 1 2.2793 7.6933 -2.7682 42 1 4.4420 7.3194 -1.6541 43 1 5.8898 3.2420 -0.9610 44 1 5.9139 2.0760 0.4315 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7834718_15494190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:25 Heat of formation + Delta-G solvation = -247.583017 kcal Electronic energy + Delta-G solvation = -36280.484477 eV Core-core repulsion = 30930.271339 eV Total energy + Delta-G solvation = -5350.213138 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.092 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.28250 -49.11948 -42.24983 -41.92866 -39.98714 -39.61081 -38.58409 -37.63325 -37.49748 -37.34134 -32.80137 -32.43362 -32.04215 -31.50098 -27.34143 -27.22351 -27.05839 -24.51857 -24.05012 -23.67835 -22.42412 -21.90948 -20.55604 -19.93165 -19.40178 -19.12816 -18.86079 -18.56887 -18.14837 -17.87524 -17.66896 -17.27510 -17.06701 -16.90833 -16.79138 -16.34559 -16.15640 -16.07330 -15.70850 -15.58820 -15.42657 -15.19514 -14.90126 -14.63482 -14.47504 -14.27682 -14.21729 -14.13604 -13.72263 -13.69378 -13.57677 -13.54363 -13.47188 -13.18282 -13.05377 -12.97864 -12.81167 -12.76630 -12.51459 -12.48106 -12.15724 -12.06855 -11.83271 -11.60057 -11.53908 -11.46673 -10.52845 -10.29302 -10.02949 -4.90962 -1.41097 -0.36988 -0.16328 0.74851 0.97241 1.31856 1.53183 1.73235 2.05633 2.10978 2.24594 2.54558 2.69638 2.71426 2.80191 2.92857 3.13464 3.27111 3.30026 3.45420 3.55181 3.64885 3.70318 3.83238 3.90542 3.94826 3.97963 4.00936 4.05195 4.24411 4.29762 4.39718 4.40922 4.44354 4.57218 4.60201 4.64257 4.72174 4.74827 4.80517 4.80954 4.87107 5.00327 5.04997 5.10742 5.38779 5.47448 6.58091 6.79528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.535 6.535 6 C -0.098 4.098 7 H 0.181 0.819 8 C -0.160 4.160 9 C 0.088 3.912 10 F -0.205 7.205 11 C -0.643 4.643 12 S 2.577 3.423 13 O -0.966 6.966 14 O -0.960 6.960 15 O -0.657 6.657 16 C 0.004 3.996 17 C 0.098 3.902 18 F -0.143 7.143 19 C -0.121 4.121 20 C -0.065 4.065 21 C -0.088 4.088 22 O -0.555 6.555 23 Si 0.789 3.211 24 C -0.094 4.094 25 C -0.082 4.082 26 C -0.115 4.115 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.203 0.797 35 H 0.205 0.795 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.399 0.601 39 H -0.258 1.258 40 H -0.309 1.309 41 H 0.193 0.807 42 H 0.209 0.791 43 H 0.137 0.863 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 -0.600 -12.985 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.316 3.684 5 O -0.424 6.424 6 C -0.116 4.116 7 H 0.199 0.801 8 C -0.198 4.198 9 C 0.068 3.932 10 F -0.186 7.186 11 C -0.771 4.771 12 S 2.676 3.324 13 O -0.964 6.964 14 O -0.958 6.958 15 O -0.616 6.616 16 C -0.038 4.038 17 C 0.076 3.924 18 F -0.121 7.121 19 C -0.140 4.140 20 C -0.066 4.066 21 C -0.197 4.197 22 O -0.363 6.363 23 Si 0.693 3.307 24 C -0.111 4.111 25 C -0.102 4.102 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.220 0.780 35 H 0.222 0.778 36 H 0.168 0.832 37 H 0.132 0.868 38 H 0.250 0.750 39 H -0.184 1.184 40 H -0.238 1.238 41 H 0.210 0.790 42 H 0.226 0.774 43 H 0.155 0.845 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.295 -1.134 -12.332 13.108 hybrid contribution 0.232 -0.274 1.703 1.740 sum -4.063 -1.409 -10.629 11.466 Atomic orbital electron populations 1.21831 0.90776 1.04234 1.03784 1.23266 0.96863 0.79276 1.02587 1.86517 1.24048 1.33499 1.83311 1.23777 0.80675 0.92679 0.71268 1.90697 1.61173 1.44141 1.46426 1.22550 0.97158 0.90834 1.01081 0.80130 1.23984 0.96207 1.02278 0.97314 1.21913 0.88472 0.94955 0.87830 1.92970 1.66821 1.97401 1.61358 1.31151 1.18727 1.08603 1.18664 1.05888 0.73921 0.75836 0.76732 1.93636 1.43469 1.85147 1.74177 1.93631 1.49424 1.84609 1.68187 1.85801 1.41818 1.61069 1.72948 1.18609 0.80800 1.08877 0.95551 1.18313 0.95504 0.98226 0.80315 1.91525 1.95546 1.86451 1.38609 1.21152 0.94961 1.01639 0.96265 1.20685 0.97665 0.95367 0.92921 1.25548 0.94656 0.89040 1.10426 1.86536 1.54178 1.20014 1.75612 0.93843 0.83880 0.77933 0.75052 1.21439 0.90596 0.97509 1.01591 1.21849 1.00264 0.98606 0.89438 1.23611 0.93745 0.96409 1.01587 0.91502 0.90895 0.88696 0.90912 0.91722 0.88026 0.86225 0.77997 0.77787 0.83186 0.86799 0.75042 1.18353 1.23782 0.79021 0.77417 0.84490 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.77 10.29 71.98 0.74 1.51 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.15 10.22 -51.45 -0.53 -0.68 16 4 C 0.47 0.35 7.49 71.23 0.53 0.88 16 5 O -0.53 -4.08 15.65 21.98 0.34 -3.74 16 6 C -0.10 0.70 3.91 -10.95 -0.04 0.65 16 7 H 0.18 -3.02 7.64 -2.39 -0.02 -3.04 16 8 C -0.16 0.51 7.11 31.18 0.22 0.73 16 9 C 0.09 -0.27 1.76 -10.27 -0.02 -0.29 16 10 F -0.21 -1.29 16.37 44.97 0.74 -0.55 16 11 C -0.64 6.09 5.05 71.98 0.36 6.45 16 12 S 2.58 11.12 4.91 -56.49 -0.28 10.84 16 13 O -0.97 -8.49 15.19 -118.57 -1.80 -10.29 16 14 O -0.96 -14.00 17.56 -118.57 -2.08 -16.08 16 15 O -0.66 -1.73 9.92 -62.20 -0.62 -2.35 16 16 C 0.00 -0.01 4.80 22.53 0.11 0.10 16 17 C 0.10 0.35 6.48 22.45 0.15 0.50 16 18 F -0.14 -1.60 16.73 44.97 0.75 -0.84 16 19 C -0.12 0.23 9.66 22.30 0.22 0.44 16 20 C -0.06 0.56 5.35 -19.85 -0.11 0.45 16 21 C -0.09 0.79 2.80 71.24 0.20 0.99 16 22 O -0.55 3.58 12.83 -148.98 -1.91 1.67 16 23 Si 0.79 -9.62 29.80 68.60 2.04 -7.58 16 24 C -0.09 1.37 8.66 22.26 0.19 1.57 16 25 C -0.08 1.06 8.47 22.36 0.19 1.25 16 26 C -0.12 0.74 6.89 31.12 0.21 0.95 16 27 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 32 H 0.10 -0.05 8.10 -2.39 -0.02 -0.07 16 33 H 0.12 -0.59 7.32 -2.39 -0.02 -0.61 16 34 H 0.20 -3.43 8.14 -2.39 -0.02 -3.45 16 35 H 0.20 -4.04 5.82 -2.39 -0.01 -4.05 16 36 H 0.15 -0.26 8.06 -2.91 -0.02 -0.29 16 37 H 0.11 -0.83 7.96 -2.38 -0.02 -0.85 16 38 H 0.40 -6.03 8.70 -74.06 -0.64 -6.68 16 39 H -0.26 2.73 7.11 99.48 0.71 3.44 16 40 H -0.31 0.58 7.11 99.48 0.71 1.29 16 41 H 0.19 -4.36 4.90 -2.91 -0.01 -4.37 16 42 H 0.21 -4.89 7.52 -2.91 -0.02 -4.91 16 43 H 0.14 -1.87 8.10 -2.39 -0.02 -1.89 16 44 H 0.10 -0.11 7.44 -2.39 -0.02 -0.13 16 Total: 0.00 -40.75 388.72 0.53 -40.22 By element: Atomic # 1 Polarization: -27.67 SS G_CDS: 0.47 Total: -27.20 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 3.40 Total: 16.59 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -6.59 Total: -31.47 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 1.49 Total: -1.39 kcal Atomic # 14 Polarization: -9.62 SS G_CDS: 2.04 Total: -7.58 kcal Atomic # 16 Polarization: 11.12 SS G_CDS: -0.28 Total: 10.84 kcal Total: -40.75 0.53 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_15494190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.365 kcal (2) G-P(sol) polarization free energy of solvation -40.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds