Wall clock time and date at job start Mon Mar 8 2021 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46939 * 2 1 4 4 C 1.34227 * 116.99601 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00441 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99964 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46937 * 300.00312 * 6 4 3 8 8 C 1.53004 * 109.47094 * 59.99857 * 6 4 3 9 9 C 1.52995 * 109.47352 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47235 * 300.00365 * 9 8 6 11 11 F 1.39901 * 109.47557 * 180.02562 * 10 9 8 12 12 C 1.53009 * 109.46846 * 299.99588 * 10 9 8 13 13 S 1.81397 * 109.47235 * 305.00026 * 12 10 9 14 14 O 1.42105 * 110.54275 * 68.37271 * 13 12 10 15 15 O 1.42101 * 110.54298 * 291.62373 * 13 12 10 16 16 O 1.52200 * 104.44908 * 179.97438 * 13 12 10 17 17 C 1.35960 * 113.99608 * 75.00210 * 16 13 12 18 18 C 1.38907 * 120.06125 * 89.99941 * 17 16 13 19 19 F 1.35098 * 120.05146 * 359.97438 * 18 17 16 20 20 C 1.38332 * 119.90431 * 179.97438 * 18 17 16 21 21 C 1.38261 * 120.02648 * 0.02562 * 20 18 17 22 22 C 1.50701 * 119.93578 * 179.97438 * 21 20 18 23 23 O 1.42906 * 109.47062 * 65.00483 * 22 21 20 24 24 Si 1.86301 * 109.47292 * 185.00367 * 22 21 20 25 25 C 1.38258 * 120.12731 * 359.97438 * 21 20 18 26 26 C 1.38178 * 120.09511 * 359.74176 * 25 21 20 27 27 C 1.52997 * 109.47368 * 59.99322 * 10 9 8 28 28 C 1.52995 * 109.47496 * 300.00519 * 27 10 9 29 29 H 1.09005 * 109.46944 * 59.99694 * 1 2 3 30 30 H 1.09000 * 109.47580 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47440 * 300.00111 * 1 2 3 32 32 H 1.08991 * 109.46989 * 240.00236 * 2 1 3 33 33 H 1.09001 * 109.46939 * 119.99787 * 2 1 3 34 34 H 1.08997 * 109.47218 * 300.00358 * 8 6 4 35 35 H 1.09003 * 109.47270 * 59.99877 * 8 6 4 36 36 H 1.08999 * 109.47842 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47137 * 59.99668 * 9 8 6 38 38 H 1.09004 * 109.47149 * 185.00052 * 12 10 9 39 39 H 1.09000 * 109.46805 * 64.99903 * 12 10 9 40 40 H 1.07994 * 119.98726 * 180.02562 * 20 18 17 41 41 H 1.09001 * 109.47244 * 305.00777 * 22 21 20 42 42 H 0.96698 * 113.99689 * 59.99401 * 23 22 21 43 43 H 1.48499 * 109.99786 * 58.68228 * 24 22 21 44 44 H 1.48503 * 110.00001 * 180.02562 * 24 22 21 45 45 H 1.08004 * 119.95452 * 179.97438 * 25 21 20 46 46 H 1.08004 * 120.01796 * 180.25846 * 26 25 21 47 47 H 1.09003 * 109.47006 * 60.00695 * 27 10 9 48 48 H 1.09006 * 109.47304 * 180.02562 * 27 10 9 49 49 H 1.08995 * 109.47157 * 179.97438 * 28 27 10 50 50 H 1.09003 * 109.47137 * 300.00096 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4700 -0.8894 8 6 3.4498 3.6836 1.2499 9 6 4.0340 5.0976 1.2502 10 6 5.5619 5.0181 1.2491 11 9 6.0963 6.3111 1.2499 12 6 6.0346 4.2708 2.4978 13 16 5.3531 5.0714 3.9759 14 8 3.9451 4.8895 4.0372 15 8 5.9347 6.3546 4.1610 16 8 5.8886 4.2450 5.1365 17 6 7.2022 4.4635 5.4111 18 6 7.5688 5.4513 6.3163 19 9 6.6207 6.1968 6.9250 20 6 8.9062 5.6705 6.5937 21 6 9.8762 4.9077 5.9701 22 6 11.3326 5.1486 6.2734 23 8 11.5940 4.8265 7.6409 24 14 12.3824 4.0747 5.1709 25 6 9.5126 3.9242 5.0689 26 6 8.1780 3.6969 4.7925 27 6 6.0329 4.2719 -0.0007 28 6 5.4487 2.8579 -0.0010 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3613 3.7407 1.2505 35 1 3.7861 3.1510 2.1395 36 1 3.6989 5.6292 2.1409 37 1 3.6973 5.6301 0.3607 38 1 7.1236 4.2911 2.5429 39 1 5.6920 3.2369 2.4538 40 1 9.1927 6.4378 7.2975 41 1 11.5723 6.1968 6.0948 42 1 11.4026 3.9073 7.8720 43 1 12.0967 4.3777 3.7455 44 1 13.8210 4.3026 5.4607 45 1 10.2726 3.3302 4.5832 46 1 7.8952 2.9255 4.0914 47 1 5.6962 4.8043 -0.8903 48 1 7.1215 4.2148 -0.0013 49 1 5.7838 2.3264 -0.8916 50 1 5.7853 2.3254 0.8885 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7834718_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:17:42 Heat of formation + Delta-G solvation = -279.895073 kcal Electronic energy + Delta-G solvation = -41268.464724 eV Core-core repulsion = 35605.775192 eV Total energy + Delta-G solvation = -5662.689532 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.35077 -49.06905 -42.31865 -41.85062 -40.05967 -39.64724 -38.59052 -37.68346 -37.53984 -37.38285 -33.59827 -32.57079 -32.32801 -32.13562 -32.04814 -29.30695 -27.20319 -25.41412 -24.55235 -24.22508 -23.75689 -23.58702 -22.10292 -21.83292 -20.61091 -19.75129 -19.23515 -19.05250 -18.77166 -18.65137 -18.11569 -17.97471 -17.66883 -17.44703 -17.34805 -17.01974 -16.76137 -16.46175 -16.21572 -16.10639 -15.73237 -15.59701 -15.38535 -15.27113 -15.08484 -14.97357 -14.63153 -14.47438 -14.38305 -14.23316 -14.12263 -13.82507 -13.69198 -13.61291 -13.58118 -13.51154 -13.35987 -13.23138 -13.12903 -12.90333 -12.87014 -12.79116 -12.70826 -12.49815 -12.29174 -12.20088 -12.00297 -11.88333 -11.61693 -11.50946 -11.39451 -11.16650 -10.58201 -10.35808 -10.09917 -4.95924 -1.42670 -0.43161 -0.23875 0.70210 1.08594 1.26967 1.62360 1.69247 1.99032 2.05035 2.21778 2.55462 2.71114 2.78654 3.06156 3.09956 3.22605 3.32711 3.37914 3.41780 3.58361 3.60982 3.64970 3.76535 3.81773 3.88939 3.94176 3.98834 4.02215 4.04427 4.16057 4.20101 4.28509 4.32783 4.34802 4.51435 4.52303 4.56657 4.64468 4.64593 4.73195 4.75953 4.81992 4.88534 4.89801 4.91579 4.96922 5.01840 5.11231 5.14202 5.23919 5.40004 5.45374 6.65082 6.75486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.466 3.534 5 O -0.532 6.532 6 C -0.083 4.083 7 H 0.139 0.861 8 C -0.108 4.108 9 C -0.177 4.177 10 C 0.132 3.868 11 F -0.207 7.207 12 C -0.674 4.674 13 S 2.574 3.426 14 O -0.944 6.944 15 O -0.971 6.971 16 O -0.660 6.660 17 C 0.004 3.996 18 C 0.097 3.903 19 F -0.141 7.141 20 C -0.121 4.121 21 C -0.066 4.066 22 C -0.087 4.087 23 O -0.553 6.553 24 Si 0.791 3.209 25 C -0.096 4.096 26 C -0.086 4.086 27 C -0.119 4.119 28 C -0.107 4.107 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.185 0.815 39 H 0.190 0.810 40 H 0.155 0.845 41 H 0.116 0.884 42 H 0.399 0.601 43 H -0.266 1.266 44 H -0.303 1.303 45 H 0.192 0.808 46 H 0.201 0.799 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -7.501 -4.947 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.422 6.422 6 C -0.101 4.101 7 H 0.156 0.844 8 C -0.146 4.146 9 C -0.215 4.215 10 C 0.113 3.887 11 F -0.187 7.187 12 C -0.803 4.803 13 S 2.673 3.327 14 O -0.942 6.942 15 O -0.969 6.969 16 O -0.619 6.619 17 C -0.038 4.038 18 C 0.076 3.924 19 F -0.119 7.119 20 C -0.139 4.139 21 C -0.067 4.067 22 C -0.195 4.195 23 O -0.361 6.361 24 Si 0.695 3.305 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.158 4.158 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.203 0.797 39 H 0.208 0.792 40 H 0.173 0.827 41 H 0.133 0.867 42 H 0.250 0.750 43 H -0.192 1.192 44 H -0.232 1.232 45 H 0.208 0.792 46 H 0.218 0.782 47 H 0.120 0.880 48 H 0.126 0.874 49 H 0.112 0.888 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.587 -6.823 -4.953 9.598 hybrid contribution -0.852 0.827 0.434 1.264 sum 3.735 -5.996 -4.519 8.386 Atomic orbital electron populations 1.21835 0.91071 1.04201 1.03646 1.23243 0.96704 0.79347 1.02621 1.86525 1.24473 1.33481 1.83404 1.24117 0.80588 0.93063 0.71260 1.90669 1.60904 1.44111 1.46491 1.21335 0.97270 0.88710 1.02825 0.84353 1.21507 1.03203 0.93490 0.96393 1.22683 0.92461 0.99712 1.06609 1.20704 0.93892 0.78415 0.95711 1.92976 1.87885 1.40293 1.97541 1.31582 1.17440 1.16358 1.14908 1.06038 0.75270 0.74644 0.76702 1.93627 1.29376 1.85727 1.85507 1.93650 1.78459 1.41423 1.83367 1.85755 1.31827 1.77775 1.66541 1.18581 0.78725 1.01757 1.04780 1.18294 0.87521 0.91560 0.95054 1.91519 1.64191 1.75051 1.81153 1.21191 0.88623 1.02160 1.01967 1.20711 0.96787 0.94434 0.94810 1.25536 0.94053 1.08220 0.91720 1.86535 1.88784 1.36016 1.24764 0.93788 0.75057 0.86474 0.75199 1.21427 0.95791 0.97055 0.97010 1.21791 0.91139 0.98072 0.99552 1.22064 1.03605 0.94970 0.95124 1.21561 0.90862 0.96482 1.05488 0.91257 0.88607 0.91499 0.91095 0.91309 0.88511 0.91079 0.90944 0.86119 0.79724 0.79234 0.82730 0.86667 0.75010 1.19178 1.23159 0.79187 0.78187 0.87960 0.87361 0.88795 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 10.29 71.98 0.74 1.33 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.65 10.12 -51.39 -0.52 -1.17 16 4 C 0.47 0.55 7.26 71.24 0.52 1.07 16 5 O -0.53 -3.22 15.73 21.96 0.35 -2.87 16 6 C -0.08 0.42 2.63 -11.54 -0.03 0.39 16 7 H 0.14 -1.26 8.14 -2.39 -0.02 -1.28 16 8 C -0.11 0.30 4.56 30.59 0.14 0.44 16 9 C -0.18 0.28 4.62 30.59 0.14 0.42 16 10 C 0.13 -0.39 1.11 -10.79 -0.01 -0.40 16 11 F -0.21 -0.67 16.36 44.97 0.74 0.07 16 12 C -0.67 3.36 4.08 71.99 0.29 3.65 16 13 S 2.57 16.98 4.41 -56.49 -0.25 16.73 16 14 O -0.94 -10.97 14.90 -118.57 -1.77 -12.74 16 15 O -0.97 -13.13 15.65 -118.57 -1.86 -14.99 16 16 O -0.66 -3.85 9.92 -62.20 -0.62 -4.46 16 17 C 0.00 0.01 4.80 22.53 0.11 0.12 16 18 C 0.10 0.69 6.48 22.45 0.15 0.84 16 19 F -0.14 -1.93 16.73 44.97 0.75 -1.17 16 20 C -0.12 -0.16 9.66 22.30 0.22 0.06 16 21 C -0.07 0.33 5.35 -19.85 -0.11 0.23 16 22 C -0.09 0.54 2.80 71.24 0.20 0.74 16 23 O -0.55 2.54 12.83 -148.98 -1.91 0.62 16 24 Si 0.79 -7.51 29.80 68.60 2.04 -5.46 16 25 C -0.10 0.95 8.66 22.26 0.19 1.15 16 26 C -0.09 0.65 8.47 22.36 0.19 0.84 16 27 C -0.12 1.04 5.19 30.59 0.16 1.20 16 28 C -0.11 0.83 4.22 30.59 0.13 0.96 16 29 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 30 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.07 -0.04 8.13 -2.39 -0.02 -0.05 16 33 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 34 H 0.10 -0.22 8.11 -2.39 -0.02 -0.24 16 35 H 0.07 -0.17 6.06 -2.39 -0.01 -0.18 16 36 H 0.07 0.24 5.40 -2.39 -0.01 0.23 16 37 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.19 -2.19 6.63 -2.39 -0.02 -2.21 16 39 H 0.19 -2.04 4.83 -2.39 -0.01 -2.05 16 40 H 0.16 0.09 8.06 -2.91 -0.02 0.06 16 41 H 0.12 -0.55 7.96 -2.39 -0.02 -0.57 16 42 H 0.40 -5.32 8.70 -74.06 -0.64 -5.96 16 43 H -0.27 1.79 7.11 99.48 0.71 2.50 16 44 H -0.30 0.04 7.11 99.48 0.71 0.75 16 45 H 0.19 -3.43 4.90 -2.91 -0.01 -3.45 16 46 H 0.20 -3.41 7.52 -2.91 -0.02 -3.43 16 47 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 48 H 0.11 -1.26 8.14 -2.38 -0.02 -1.28 16 49 H 0.09 -0.73 8.10 -2.39 -0.02 -0.75 16 50 H 0.08 -0.75 6.28 -2.39 -0.01 -0.76 16 Total: 0.00 -34.48 412.83 0.83 -33.65 By element: Atomic # 1 Polarization: -22.06 SS G_CDS: 0.41 Total: -21.65 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 3.47 Total: 13.45 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -6.33 Total: -35.61 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 1.49 Total: -1.11 kcal Atomic # 14 Polarization: -7.51 SS G_CDS: 2.04 Total: -5.46 kcal Atomic # 16 Polarization: 16.98 SS G_CDS: -0.25 Total: 16.73 kcal Total: -34.48 0.83 -33.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.246 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds