Wall clock time and date at job start Mon Mar 8 2021 11:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.47292 * 2 1 4 4 C 1.86306 * 109.47002 * 239.99980 * 2 1 3 5 5 C 1.86301 * 109.47067 * 120.00054 * 2 1 3 6 6 C 1.52999 * 109.47115 * 60.00162 * 5 2 1 7 7 C 1.52998 * 109.46987 * 179.97438 * 6 5 2 8 8 S 1.81397 * 109.47056 * 179.97438 * 7 6 5 9 9 O 1.42102 * 110.54050 * 68.38067 * 8 7 6 10 10 O 1.42097 * 110.54728 * 291.62691 * 8 7 6 11 11 O 1.52206 * 104.45132 * 180.02562 * 8 7 6 12 12 C 1.35899 * 113.99819 * 75.00290 * 11 8 7 13 13 C 1.38735 * 120.05582 * 269.73295 * 12 11 8 14 14 C 1.38140 * 119.94311 * 179.74552 * 13 12 11 15 15 C 1.38268 * 120.05575 * 0.50153 * 14 13 12 16 16 C 1.50704 * 119.94243 * 179.74866 * 15 14 13 17 17 O 1.42904 * 109.46763 * 245.02296 * 16 15 14 18 18 Si 1.86299 * 109.47447 * 5.01865 * 16 15 14 19 19 H 1.48505 * 109.46776 * 60.00258 * 18 16 15 20 20 H 1.48499 * 109.47317 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47137 * 300.00568 * 18 16 15 22 22 C 1.38257 * 120.11303 * 359.77058 * 15 14 13 23 23 C 1.38149 * 120.05674 * 359.97438 * 22 15 14 24 24 H 1.09006 * 109.46812 * 299.99818 * 1 2 3 25 25 H 1.08994 * 109.47262 * 59.99497 * 1 2 3 26 26 H 1.08994 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46969 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46628 * 300.00164 * 3 2 1 29 29 H 1.08993 * 109.47185 * 60.00064 * 3 2 1 30 30 H 1.09000 * 109.46871 * 300.00500 * 4 2 1 31 31 H 1.09003 * 109.46756 * 59.99570 * 4 2 1 32 32 H 1.09000 * 109.46988 * 179.97438 * 4 2 1 33 33 H 1.08993 * 109.47126 * 299.99762 * 5 2 1 34 34 H 1.09006 * 109.46993 * 179.97438 * 5 2 1 35 35 H 1.08993 * 109.47450 * 59.99799 * 6 5 2 36 36 H 1.09006 * 109.46698 * 299.99577 * 6 5 2 37 37 H 1.09006 * 109.47227 * 59.99790 * 7 6 5 38 38 H 1.09000 * 109.47376 * 299.99966 * 7 6 5 39 39 H 1.08006 * 120.02806 * 359.97438 * 13 12 11 40 40 H 1.08005 * 119.96993 * 180.22342 * 14 13 12 41 41 H 1.08994 * 109.47028 * 125.02309 * 16 15 14 42 42 H 0.96699 * 113.99983 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.97284 * 179.97438 * 22 15 14 44 44 H 1.07993 * 120.03185 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5211 7 6 2.4845 -3.0422 2.7700 8 16 1.8793 -4.7522 2.7704 9 8 2.4911 -5.4979 1.7269 10 8 0.4720 -4.7831 2.9650 11 8 2.4475 -5.3560 4.0468 12 6 1.8165 -4.9487 5.1794 13 6 2.2622 -3.8229 5.8566 14 6 1.6159 -3.4080 7.0048 15 6 0.5320 -4.1196 7.4849 16 6 -0.1678 -3.6679 8.7409 17 8 -0.0002 -4.6548 9.7607 18 14 0.5642 -2.0531 9.3133 19 1 0.3901 -1.0275 8.2535 20 1 -0.1249 -1.6084 10.5512 21 1 2.0114 -2.2367 9.5915 22 6 0.0893 -5.2451 6.8150 23 6 0.7290 -5.6612 5.6634 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.5741 1.7564 -0.0005 28 1 2.1206 2.2702 -0.8900 29 1 2.1208 2.2703 0.8899 30 1 2.1205 -1.9059 -1.5212 31 1 2.1205 -0.3644 -2.4112 32 1 3.5740 -0.8779 -1.5214 33 1 2.1207 -0.3644 2.4111 34 1 3.5740 -0.8786 1.5209 35 1 2.3373 -2.8346 0.6312 36 1 0.8839 -2.3207 1.5212 37 1 2.1216 -2.5284 3.6603 38 1 3.5745 -3.0422 2.7696 39 1 3.1116 -3.2692 5.4844 40 1 1.9603 -2.5295 7.5303 41 1 -1.2299 -3.5332 8.5367 42 1 -0.4260 -4.4301 10.5993 43 1 -0.7573 -5.7995 7.1923 44 1 0.3832 -6.5407 5.1407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79476_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:43 Heat of formation + Delta-G solvation = -158.315812 kcal Electronic energy + Delta-G solvation = -24695.985863 eV Core-core repulsion = 21057.699154 eV Total energy + Delta-G solvation = -3638.286709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.112 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24822 -39.75665 -38.43221 -37.40820 -37.30967 -35.85165 -32.46242 -32.24862 -29.60318 -28.37911 -28.30263 -28.21630 -26.89936 -24.34321 -23.57775 -22.57762 -21.44955 -19.62090 -18.83496 -18.64433 -18.36196 -17.34992 -16.95918 -16.76198 -16.03753 -15.81074 -15.50899 -14.82370 -14.74214 -14.54512 -14.51807 -14.13954 -14.08525 -14.02370 -13.96027 -13.80328 -13.56904 -13.54665 -13.46013 -13.36723 -13.24124 -13.14906 -13.03888 -12.98485 -12.97608 -12.47682 -12.23412 -11.96089 -11.84380 -11.80219 -11.72393 -10.70637 -10.67822 -10.44008 -10.35458 -10.24007 -9.92976 -1.13204 -0.11783 0.08587 0.96723 1.17127 1.49795 1.56099 1.92505 1.94356 2.01438 2.02529 2.27954 2.50243 2.74330 2.85656 3.34497 3.50995 3.62899 3.65623 3.70805 3.85821 3.97270 4.09256 4.18503 4.22125 4.42307 4.48749 4.64811 4.75171 4.76515 4.81124 4.81901 4.84335 4.87011 4.87704 4.88150 4.89803 4.92638 5.08462 5.11308 5.25783 5.46557 5.60474 5.62698 5.66940 5.67624 6.81841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.068 2.932 3 C -0.462 4.462 4 C -0.476 4.476 5 C -0.409 4.409 6 C -0.121 4.121 7 C -0.625 4.625 8 S 2.578 3.422 9 O -0.972 6.972 10 O -0.977 6.977 11 O -0.670 6.670 12 C 0.043 3.957 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.066 4.066 16 C -0.089 4.089 17 O -0.562 6.562 18 Si 0.973 3.027 19 H -0.246 1.246 20 H -0.257 1.257 21 H -0.263 1.263 22 C -0.079 4.079 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.103 0.897 42 H 0.401 0.599 43 H 0.155 0.845 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 7.024 4.886 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.261 2.739 3 C -0.569 4.569 4 C -0.581 4.581 5 C -0.495 4.495 6 C -0.160 4.160 7 C -0.756 4.756 8 S 2.680 3.320 9 O -0.970 6.970 10 O -0.975 6.975 11 O -0.630 6.630 12 C 0.002 3.998 13 C -0.141 4.141 14 C -0.130 4.130 15 C -0.067 4.067 16 C -0.199 4.199 17 O -0.372 6.372 18 Si 0.796 3.204 19 H -0.170 1.170 20 H -0.182 1.182 21 H -0.187 1.187 22 C -0.097 4.097 23 C -0.129 4.129 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.195 0.805 40 H 0.174 0.826 41 H 0.121 0.879 42 H 0.252 0.748 43 H 0.172 0.828 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.046 6.699 4.464 8.050 hybrid contribution -0.187 -0.167 -0.081 0.264 sum -0.233 6.532 4.383 7.870 Atomic orbital electron populations 1.26417 1.22578 1.04360 1.04497 0.78306 0.65133 0.65410 0.65095 1.26267 1.06441 1.19801 1.04394 1.26458 1.06602 1.08344 1.16694 1.26211 1.07130 0.99254 1.16898 1.21222 1.02356 0.97933 0.94462 1.30780 1.15210 1.19677 1.09932 1.05848 0.74073 0.78960 0.73145 1.93594 1.78154 1.70352 1.54920 1.93609 1.33101 1.87263 1.83548 1.85696 1.70173 1.77029 1.30073 1.18398 0.95629 0.98291 0.87457 1.21609 1.01280 0.95145 0.96039 1.21211 0.94713 1.00965 0.96118 1.19872 0.95582 0.95480 0.95769 1.24885 1.04571 1.02346 0.88090 1.86457 1.79824 1.45973 1.24909 0.85360 0.79844 0.74543 0.80681 1.16998 1.18151 1.18705 1.21154 1.00032 0.95755 0.92738 1.21575 0.94038 1.00252 0.97049 0.90879 0.91615 0.91469 0.91117 0.91708 0.90968 0.91531 0.91612 0.91073 0.88588 0.88815 0.89826 0.89468 0.81968 0.81543 0.80459 0.82615 0.87938 0.74833 0.82767 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.66 8.65 113.37 0.98 2.64 16 2 Si 1.07 -7.40 12.19 68.60 0.84 -6.56 16 3 C -0.46 2.22 8.65 113.37 0.98 3.20 16 4 C -0.48 1.36 8.65 113.37 0.98 2.34 16 5 C -0.41 3.13 4.45 71.98 0.32 3.45 16 6 C -0.12 0.51 4.59 30.59 0.14 0.65 16 7 C -0.62 3.11 5.48 71.98 0.39 3.51 16 8 S 2.58 13.64 5.17 -56.49 -0.29 13.35 16 9 O -0.97 -12.88 18.09 -118.57 -2.15 -15.03 16 10 O -0.98 -9.54 16.26 -118.57 -1.93 -11.47 16 11 O -0.67 -3.80 10.05 -61.50 -0.62 -4.42 16 12 C 0.04 0.17 4.79 22.51 0.11 0.28 16 13 C -0.12 0.26 8.47 22.37 0.19 0.45 16 14 C -0.11 0.28 8.66 22.25 0.19 0.48 16 15 C -0.07 0.05 5.38 -19.85 -0.11 -0.06 16 16 C -0.09 0.46 2.79 71.24 0.20 0.65 16 17 O -0.56 1.97 12.81 -148.98 -1.91 0.06 16 18 Si 0.97 -5.83 25.14 68.60 1.72 -4.11 16 19 H -0.25 1.47 7.11 99.48 0.71 2.18 16 20 H -0.26 1.34 7.11 99.48 0.71 2.05 16 21 H -0.26 0.84 7.04 99.48 0.70 1.54 16 22 C -0.08 -0.10 9.68 22.25 0.22 0.11 16 23 C -0.11 -0.51 9.05 22.37 0.20 -0.30 16 24 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 25 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 26 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 27 H 0.07 -0.35 7.96 -2.38 -0.02 -0.36 16 28 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 30 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 31 H 0.06 -0.14 7.96 -2.39 -0.02 -0.15 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.10 -0.96 7.96 -2.39 -0.02 -0.98 16 34 H 0.09 -0.88 7.96 -2.38 -0.02 -0.90 16 35 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 36 H 0.09 -0.44 7.79 -2.38 -0.02 -0.46 16 37 H 0.16 -1.62 6.62 -2.39 -0.02 -1.64 16 38 H 0.17 -1.65 8.14 -2.39 -0.02 -1.67 16 39 H 0.18 -1.74 7.53 -2.91 -0.02 -1.76 16 40 H 0.16 -1.11 4.86 -2.91 -0.01 -1.12 16 41 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 42 H 0.40 -4.91 8.74 -74.06 -0.65 -5.56 16 43 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.14 0.59 8.06 -2.91 -0.02 0.57 16 Total: 0.00 -24.03 373.06 1.55 -22.48 By element: Atomic # 1 Polarization: -12.78 SS G_CDS: 1.08 Total: -11.70 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 4.80 Total: 17.40 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -6.60 Total: -30.86 kcal Atomic # 14 Polarization: -13.23 SS G_CDS: 2.56 Total: -10.67 kcal Atomic # 16 Polarization: 13.64 SS G_CDS: -0.29 Total: 13.35 kcal Total: -24.03 1.55 -22.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.836 kcal (2) G-P(sol) polarization free energy of solvation -24.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds