Wall clock time and date at job start Mon Mar 8 2021 12:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47199 * 2 1 4 4 C 1.34226 * 116.99908 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00060 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99965 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47580 * 59.99931 * 6 4 3 8 8 C 1.52998 * 109.47465 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47340 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46829 * 299.99534 * 9 8 6 11 11 F 1.39902 * 109.47113 * 299.99724 * 10 9 8 12 12 C 1.53009 * 109.46680 * 180.02562 * 10 9 8 13 13 S 1.81397 * 109.46705 * 185.00158 * 12 10 9 14 14 O 1.42097 * 110.54633 * 68.37423 * 13 12 10 15 15 O 1.42106 * 110.54239 * 291.62239 * 13 12 10 16 16 O 1.52202 * 104.44771 * 179.97438 * 13 12 10 17 17 C 1.35898 * 114.00106 * 75.00265 * 16 13 12 18 18 C 1.38733 * 120.06190 * 89.99277 * 17 16 13 19 19 C 1.38143 * 119.94722 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05458 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.94183 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47131 * 299.99242 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.97438 * 21 20 19 24 24 C 1.38266 * 120.11357 * 0.26829 * 20 19 18 25 25 C 1.38148 * 120.05160 * 359.45039 * 24 20 19 26 26 C 1.52996 * 109.47048 * 60.00391 * 10 9 8 27 27 C 1.52997 * 109.46986 * 299.99513 * 26 10 9 28 28 H 1.08997 * 109.47223 * 299.99985 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99721 * 1 2 3 30 30 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46684 * 240.00247 * 2 1 3 32 32 H 1.08993 * 109.46841 * 120.00317 * 2 1 3 33 33 H 1.08996 * 109.47214 * 59.99172 * 8 6 4 34 34 H 1.09005 * 109.46398 * 300.00020 * 8 6 4 35 35 H 1.09001 * 109.46904 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47105 * 59.99623 * 9 8 6 37 37 H 1.08996 * 109.47360 * 65.00230 * 12 10 9 38 38 H 1.09000 * 109.47207 * 304.99709 * 12 10 9 39 39 H 1.08006 * 120.02574 * 0.02562 * 18 17 16 40 40 H 1.08000 * 119.97202 * 179.97438 * 19 18 17 41 41 H 1.08999 * 109.47358 * 59.99601 * 21 20 19 42 42 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 43 43 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 44 44 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 45 45 H 1.07998 * 119.97551 * 179.73033 * 24 20 19 46 46 H 1.07999 * 120.02807 * 180.27340 * 25 24 20 47 47 H 1.08996 * 109.47299 * 60.00124 * 26 10 9 48 48 H 1.08999 * 109.46869 * 179.97438 * 26 10 9 49 49 H 1.09004 * 109.47036 * 300.00194 * 27 26 10 50 50 H 1.09001 * 109.46904 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4693 0.8911 8 6 5.4487 2.8573 0.0010 9 6 6.0334 4.2711 0.0010 10 6 5.5619 5.0180 -1.2483 11 9 5.9931 4.3350 -2.3905 12 6 6.1472 6.4317 -1.2486 13 16 5.4718 7.3653 -2.6495 14 8 4.0866 7.6184 -2.4588 15 8 5.9588 6.8429 -3.8781 16 8 6.1220 8.7372 -2.5403 17 6 7.4247 8.7638 -2.9264 18 6 7.7525 9.0271 -4.2485 19 6 9.0775 9.0541 -4.6382 20 6 10.0767 8.8185 -3.7120 21 6 11.5213 8.8480 -4.1401 22 8 11.7406 7.8562 -5.1453 23 14 12.6116 8.4956 -2.6710 24 6 9.7525 8.5498 -2.3950 25 6 8.4291 8.5274 -1.9991 26 6 4.0340 5.0981 -1.2482 27 6 3.4492 3.6843 -1.2481 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.7846 2.3255 -0.8891 34 1 5.7846 2.3247 0.8908 35 1 7.1220 4.2140 0.0014 36 1 5.6975 4.8032 0.8910 37 1 7.2320 6.3757 -1.3384 38 1 5.8851 6.9337 -0.3172 39 1 6.9724 9.2116 -4.9723 40 1 9.3331 9.2586 -5.6674 41 1 11.7611 9.8322 -4.5423 42 1 11.5469 6.9539 -4.8565 43 1 12.2729 7.1701 -2.0935 44 1 14.0389 8.5212 -3.0801 45 1 10.5345 8.3618 -1.6743 46 1 8.1765 8.3219 -0.9693 47 1 3.6981 5.6303 -0.3583 48 1 3.6981 5.6306 -2.1379 49 1 3.7851 3.1521 -2.1382 50 1 2.3607 3.7414 -1.2485 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79476_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:47:31 Heat of formation + Delta-G solvation = -240.510743 kcal Electronic energy + Delta-G solvation = -37626.078118 eV Core-core repulsion = 32434.550394 eV Total energy + Delta-G solvation = -5191.527724 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.07634 -42.36713 -41.67616 -40.00386 -39.17288 -38.37423 -37.62168 -37.53113 -37.26373 -34.31972 -32.70411 -32.55612 -32.28669 -32.20551 -29.19177 -27.08833 -25.19715 -24.44493 -24.31932 -23.71287 -23.42058 -21.95638 -21.61351 -20.94638 -19.64333 -19.05180 -18.77433 -18.68779 -18.47620 -17.94155 -17.61965 -17.20700 -17.13738 -16.84475 -16.65093 -16.40379 -16.32061 -16.21241 -15.63097 -15.33394 -15.09358 -14.99077 -14.93212 -14.61629 -14.54356 -14.42963 -14.27684 -14.16178 -13.84397 -13.80578 -13.64121 -13.51585 -13.40571 -13.31108 -13.26769 -13.21139 -13.06138 -12.88346 -12.67105 -12.53423 -12.51527 -12.42064 -12.31858 -12.01129 -11.86392 -11.79463 -11.50582 -11.32217 -11.19605 -10.83124 -10.38200 -10.12124 -5.12121 -1.27756 -0.24513 -0.05710 0.86650 1.09526 1.19276 1.43615 1.61477 1.83486 2.16451 2.28337 2.64606 2.74047 2.96424 3.14634 3.17416 3.20364 3.31267 3.40360 3.45072 3.49278 3.52526 3.67597 3.79133 3.87596 3.90379 3.94413 3.95792 3.98042 4.01308 4.08421 4.09582 4.13556 4.29018 4.34747 4.40353 4.47096 4.57242 4.61156 4.62238 4.68518 4.70232 4.78770 4.80199 4.81698 4.86673 4.95864 4.98267 5.02199 5.10754 5.12599 5.47702 5.48399 6.24324 6.75104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.467 3.533 5 O -0.504 6.504 6 C -0.082 4.082 7 H 0.115 0.885 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.138 3.862 11 F -0.188 7.188 12 C -0.687 4.687 13 S 2.594 3.406 14 O -0.915 6.915 15 O -0.931 6.931 16 O -0.660 6.660 17 C 0.065 3.935 18 C -0.085 4.085 19 C -0.073 4.073 20 C -0.099 4.099 21 C -0.079 4.079 22 O -0.526 6.526 23 Si 0.684 3.316 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.171 4.171 27 C -0.111 4.111 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.126 0.874 42 H 0.379 0.621 43 H -0.257 1.257 44 H -0.253 1.253 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 2.850 5.334 6.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.101 4.101 7 H 0.133 0.867 8 C -0.147 4.147 9 C -0.166 4.166 10 C 0.118 3.882 11 F -0.169 7.169 12 C -0.812 4.812 13 S 2.687 3.313 14 O -0.914 6.914 15 O -0.930 6.930 16 O -0.619 6.619 17 C 0.024 3.976 18 C -0.105 4.105 19 C -0.091 4.091 20 C -0.100 4.100 21 C -0.188 4.188 22 O -0.332 6.332 23 Si 0.585 3.415 24 C -0.118 4.118 25 C -0.146 4.146 26 C -0.209 4.209 27 C -0.149 4.149 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.227 0.773 43 H -0.182 1.182 44 H -0.178 1.178 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.123 0.877 48 H 0.112 0.888 49 H 0.099 0.901 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.886 2.820 4.813 5.889 hybrid contribution -0.206 -1.371 -0.012 1.387 sum 1.679 1.449 4.801 5.289 Atomic orbital electron populations 1.21823 0.92279 1.03277 1.03693 1.23090 0.95632 0.79797 1.02758 1.86501 1.24281 1.32802 1.83750 1.23594 0.80765 0.92410 0.72314 1.90693 1.60468 1.43054 1.44878 1.21171 0.96637 0.90240 1.02097 0.86713 1.21482 0.91703 0.96377 1.05150 1.22095 1.02511 0.95929 0.96098 1.20466 0.94790 0.87499 0.85397 1.92981 1.91120 1.81067 1.51720 1.31588 1.15033 1.10102 1.24524 1.05690 0.75389 0.73749 0.76426 1.93673 1.28950 1.82023 1.86709 1.93698 1.80487 1.78954 1.39837 1.85748 1.31677 1.57603 1.86875 1.18126 0.77602 1.07760 0.94138 1.21426 0.98186 0.96812 0.94077 1.21034 0.90550 0.96913 1.00579 1.20600 0.96931 0.98713 0.93775 1.25119 0.95546 0.96368 1.01805 1.86632 1.89499 1.19015 1.38063 0.95129 0.79136 0.86879 0.80395 1.20921 0.95499 0.99628 0.95703 1.21286 0.92196 1.01509 0.99633 1.22691 0.91976 0.99572 1.06615 1.21497 1.02471 0.93959 0.96933 0.91357 0.91309 0.90006 0.91072 0.91111 0.89777 0.89643 0.89299 0.89032 0.83223 0.82203 0.83707 0.83678 0.85663 0.77315 1.18158 1.17799 0.83877 0.83679 0.87706 0.88797 0.90085 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.16 0.38 0.61 16 2 C 0.06 0.03 6.19 37.16 0.23 0.26 16 3 O -0.36 -0.59 10.12 -39.25 -0.40 -0.98 16 4 C 0.47 0.97 7.25 36.00 0.26 1.23 16 5 O -0.50 -2.51 15.73 -18.75 -0.29 -2.80 16 6 C -0.08 0.06 2.63 -91.77 -0.24 -0.18 16 7 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 8 C -0.11 0.09 4.37 -26.73 -0.12 -0.03 16 9 C -0.13 0.34 5.00 -26.73 -0.13 0.21 16 10 C 0.14 -0.12 0.89 -90.62 -0.08 -0.20 16 11 F -0.19 -0.40 15.33 2.25 0.03 -0.36 16 12 C -0.69 1.79 4.78 37.16 0.18 1.96 16 13 S 2.59 3.62 4.41 -107.50 -0.47 3.15 16 14 O -0.92 -3.39 15.64 -67.04 -1.05 -4.44 16 15 O -0.93 -3.86 15.96 -67.03 -1.07 -4.93 16 16 O -0.66 -0.65 10.05 -51.74 -0.52 -1.17 16 17 C 0.06 0.03 4.80 -39.21 -0.19 -0.16 16 18 C -0.08 -0.05 9.05 -39.43 -0.36 -0.40 16 19 C -0.07 0.05 9.60 -39.61 -0.38 -0.33 16 20 C -0.10 0.17 5.39 -104.60 -0.56 -0.39 16 21 C -0.08 0.17 2.82 36.00 0.10 0.27 16 22 O -0.53 0.16 12.77 -35.23 -0.45 -0.29 16 23 Si 0.68 -1.95 29.79 -169.99 -5.06 -7.01 16 24 C -0.10 0.28 8.66 -39.60 -0.34 -0.07 16 25 C -0.13 0.28 8.46 -39.43 -0.33 -0.05 16 26 C -0.17 0.14 4.32 -26.73 -0.12 0.02 16 27 C -0.11 0.07 5.01 -26.73 -0.13 -0.07 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 31 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 33 H 0.08 0.09 7.76 -51.93 -0.40 -0.32 16 34 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 35 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 36 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 37 H 0.15 -0.66 6.60 -51.93 -0.34 -1.00 16 38 H 0.16 -0.98 8.14 -51.92 -0.42 -1.41 16 39 H 0.15 -0.02 8.06 -52.48 -0.42 -0.44 16 40 H 0.15 -0.26 8.06 -52.49 -0.42 -0.68 16 41 H 0.13 -0.39 7.96 -51.93 -0.41 -0.80 16 42 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 43 H -0.26 0.30 7.10 56.52 0.40 0.70 16 44 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 45 H 0.14 -0.74 4.87 -52.49 -0.26 -1.00 16 46 H 0.15 -0.81 7.49 -52.49 -0.39 -1.20 16 47 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 48 H 0.09 0.05 5.40 -51.93 -0.28 -0.23 16 49 H 0.08 0.04 7.80 -51.93 -0.41 -0.37 16 50 H 0.09 -0.13 8.11 -51.93 -0.42 -0.55 16 LS Contribution 413.85 15.07 6.24 6.24 Total: 0.00 -11.71 413.85 -12.09 -23.80 By element: Atomic # 1 Polarization: -6.69 SS G_CDS: -7.21 Total: -13.90 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.83 Total: 2.69 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -3.78 Total: -14.61 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.03 Total: -0.36 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.06 Total: -7.01 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -0.47 Total: 3.15 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -11.71 -12.09 -23.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.706 kcal (2) G-P(sol) polarization free energy of solvation -11.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds