Wall clock time and date at job start Mon Mar 8 2021 12:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45203 * 109.47397 * 2 1 4 4 C 1.34224 * 117.00119 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00273 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99984 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.84858 * 48.80875 * 6 4 3 8 8 C 1.53784 * 113.61400 * 180.02562 * 6 4 3 9 9 C 1.53786 * 87.07915 * 139.98193 * 8 6 4 10 10 F 1.39900 * 113.61531 * 89.19955 * 9 8 6 11 11 C 1.52998 * 113.61517 * 220.01736 * 9 8 6 12 12 S 1.81392 * 109.47399 * 180.02562 * 11 9 8 13 13 O 1.42102 * 110.54544 * 68.37319 * 12 11 9 14 14 O 1.42101 * 110.54554 * 291.62690 * 12 11 9 15 15 O 1.52195 * 104.45213 * 180.02562 * 12 11 9 16 16 C 1.35898 * 114.00139 * 75.00079 * 15 12 11 17 17 C 1.38738 * 120.05510 * 270.27750 * 16 15 12 18 18 C 1.38141 * 119.94395 * 180.29870 * 17 16 15 19 19 C 1.38274 * 120.05552 * 359.44290 * 18 17 16 20 20 C 1.50696 * 119.94301 * 180.27916 * 19 18 17 21 21 O 1.42901 * 109.47185 * 65.00307 * 20 19 18 22 22 Si 1.86301 * 109.46880 * 185.00271 * 20 19 18 23 23 C 1.38260 * 120.11026 * 0.25933 * 19 18 17 24 24 C 1.38149 * 120.05668 * 0.02562 * 23 19 18 25 25 C 1.53775 * 87.08246 * 334.56824 * 9 8 6 26 26 H 1.08996 * 109.46840 * 300.00130 * 1 2 3 27 27 H 1.08998 * 109.46613 * 60.00053 * 1 2 3 28 28 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47219 * 240.00096 * 2 1 3 30 30 H 1.09011 * 109.47261 * 119.99995 * 2 1 3 31 31 H 1.08996 * 113.61369 * 25.43919 * 8 6 4 32 32 H 1.08999 * 113.61326 * 254.52566 * 8 6 4 33 33 H 1.09004 * 109.47059 * 60.00006 * 11 9 8 34 34 H 1.09010 * 109.47124 * 300.00521 * 11 9 8 35 35 H 1.07998 * 120.02566 * 0.03783 * 17 16 15 36 36 H 1.08002 * 119.97550 * 179.72852 * 18 17 16 37 37 H 1.08998 * 109.47404 * 304.99778 * 20 19 18 38 38 H 0.96702 * 114.00258 * 60.00153 * 21 20 19 39 39 H 1.48500 * 109.99835 * 180.02562 * 22 20 19 40 40 H 1.48503 * 109.99893 * 301.31796 * 22 20 19 41 41 H 1.07997 * 119.97485 * 180.02562 * 23 19 18 42 42 H 1.07997 * 120.02837 * 180.02562 * 24 23 19 43 43 H 1.08997 * 113.61703 * 139.98343 * 25 9 8 44 44 H 1.09004 * 113.61592 * 270.88375 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.4709 3.5818 0.7553 8 6 5.4583 2.9680 0.0001 9 6 5.3566 4.1420 -0.9880 10 9 5.2852 5.3932 -0.3663 11 6 6.3988 4.0933 -2.1071 12 16 6.1785 5.5232 -3.2013 13 8 6.5241 6.7252 -2.5269 14 8 4.9609 5.4138 -3.9257 15 8 7.2601 5.3617 -4.2598 16 6 6.9940 4.3972 -5.1794 17 6 7.4073 3.0917 -4.9566 18 6 7.1410 2.1143 -5.8958 19 6 6.4530 2.4339 -7.0519 20 6 6.1583 1.3644 -8.0718 21 8 5.2713 0.3975 -7.5056 22 14 5.3617 2.1363 -9.5686 23 6 6.0346 3.7329 -7.2734 24 6 6.3036 4.7152 -6.3399 25 6 3.9865 3.5764 -1.3973 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8901 31 1 5.9128 2.0748 -0.4285 32 1 5.8895 3.2435 0.9625 33 1 6.2742 3.1743 -2.6799 34 1 7.3988 4.1185 -1.6737 35 1 7.9405 2.8406 -4.0516 36 1 7.4663 1.0987 -5.7249 37 1 7.0877 0.8767 -8.3658 38 1 4.4221 0.7620 -7.2208 39 1 5.0655 1.0919 -10.5818 40 1 4.1098 2.8318 -9.1758 41 1 5.4970 3.9800 -8.1769 42 1 5.9762 5.7296 -6.5133 43 1 3.2294 4.3428 -1.5629 44 1 4.0386 2.8494 -2.2078 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79476_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:50:30 Heat of formation + Delta-G solvation = -201.905799 kcal Electronic energy + Delta-G solvation = -33299.145978 eV Core-core repulsion = 28420.367528 eV Total energy + Delta-G solvation = -4878.778450 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.101 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.24938 -42.30907 -41.88283 -39.89271 -39.37612 -38.51655 -37.57815 -37.52618 -37.38437 -32.90322 -32.55371 -32.14704 -31.84273 -27.32985 -27.01678 -26.91063 -24.36363 -23.98166 -23.55050 -22.31199 -21.55403 -20.89928 -19.70799 -19.23050 -19.05779 -18.68134 -18.37330 -17.81507 -17.65020 -17.30318 -17.16776 -16.64990 -16.49938 -16.26705 -16.18254 -16.06860 -15.53230 -15.40381 -14.90136 -14.72491 -14.65649 -14.53260 -14.43541 -14.26605 -14.24309 -13.71555 -13.67035 -13.55393 -13.50684 -13.46469 -13.25446 -13.10238 -12.98497 -12.94706 -12.55662 -12.48107 -12.42422 -12.29566 -11.90301 -11.71118 -11.59964 -11.53637 -11.43191 -10.68182 -10.24824 -10.01893 -4.92261 -1.30465 -0.16524 0.11308 0.86202 0.96130 1.28197 1.53064 1.59506 1.96544 2.28405 2.31980 2.60137 2.68889 2.76234 2.85767 3.14171 3.22767 3.37625 3.50622 3.55050 3.67088 3.68453 3.76730 3.94009 3.95141 4.00700 4.08281 4.11845 4.23624 4.29474 4.31953 4.33698 4.40666 4.54890 4.60994 4.72034 4.75597 4.79107 4.81321 4.86772 4.97508 4.99816 5.05482 5.10050 5.24369 5.37687 5.63420 6.46255 6.56986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.528 6.528 6 C -0.111 4.111 7 H 0.148 0.852 8 C -0.113 4.113 9 C 0.092 3.908 10 F -0.188 7.188 11 C -0.656 4.656 12 S 2.592 3.408 13 O -0.958 6.958 14 O -0.961 6.961 15 O -0.664 6.664 16 C 0.040 3.960 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.097 4.097 20 C -0.077 4.077 21 O -0.542 6.542 22 Si 0.752 3.248 23 C -0.102 4.102 24 C -0.101 4.101 25 C -0.147 4.147 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.388 0.612 39 H -0.302 1.302 40 H -0.282 1.282 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -4.755 -2.049 5.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.321 3.679 5 O -0.417 6.417 6 C -0.130 4.130 7 H 0.166 0.834 8 C -0.152 4.152 9 C 0.072 3.928 10 F -0.169 7.169 11 C -0.784 4.784 12 S 2.690 3.310 13 O -0.957 6.957 14 O -0.960 6.960 15 O -0.623 6.623 16 C -0.001 4.001 17 C -0.148 4.148 18 C -0.091 4.091 19 C -0.098 4.098 20 C -0.186 4.186 21 O -0.351 6.351 22 Si 0.658 3.342 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.185 4.185 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.205 0.795 34 H 0.204 0.796 35 H 0.191 0.809 36 H 0.181 0.819 37 H 0.157 0.843 38 H 0.237 0.763 39 H -0.230 1.230 40 H -0.209 1.209 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.127 0.873 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.536 -4.618 -2.926 5.493 hybrid contribution -0.684 -0.453 1.412 1.633 sum -0.149 -5.071 -1.514 5.295 Atomic orbital electron populations 1.21838 0.90956 1.04265 1.03681 1.23288 0.96778 0.79104 1.02773 1.86532 1.24179 1.33755 1.83281 1.23597 0.80673 0.92291 0.71327 1.90673 1.60964 1.43699 1.46415 1.22596 0.97778 0.90975 1.01602 0.83415 1.23610 0.93239 0.97313 1.01007 1.21389 0.96134 0.81732 0.93550 1.92988 1.97129 1.42753 1.83984 1.31259 1.11011 1.23583 1.12575 1.05456 0.73346 0.76906 0.75300 1.93629 1.82847 1.43828 1.75363 1.93628 1.46859 1.87355 1.68145 1.85755 1.66948 1.60411 1.49183 1.18485 1.04754 0.86123 0.90710 1.21764 1.00139 0.89743 1.03116 1.21213 0.95877 1.00339 0.91673 1.20657 0.97606 0.94605 0.96956 1.25149 0.99624 0.92623 1.01234 1.86606 1.30653 1.36303 1.81497 0.94155 0.83288 0.80963 0.75777 1.21192 0.99493 0.91920 0.99393 1.21481 0.96194 1.01938 0.92512 1.23880 0.95862 1.01986 0.96723 0.91400 0.91310 0.88500 0.90948 0.91176 0.85140 0.87123 0.79529 0.79557 0.80856 0.81924 0.84283 0.76274 1.23040 1.20854 0.82709 0.83865 0.87304 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.03 6.19 71.98 0.45 0.41 16 3 O -0.36 -0.77 10.22 -51.36 -0.52 -1.30 16 4 C 0.48 0.90 7.48 71.24 0.53 1.43 16 5 O -0.53 -3.40 15.65 21.96 0.34 -3.06 16 6 C -0.11 0.31 4.24 -11.01 -0.05 0.27 16 7 H 0.15 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.11 0.54 6.86 31.12 0.21 0.76 16 9 C 0.09 -0.21 1.62 -10.27 -0.02 -0.23 16 10 F -0.19 -0.75 16.28 44.97 0.73 -0.02 16 11 C -0.66 3.81 5.16 71.98 0.37 4.18 16 12 S 2.59 10.12 4.89 -56.49 -0.28 9.85 16 13 O -0.96 -12.43 17.54 -118.57 -2.08 -14.51 16 14 O -0.96 -6.65 16.26 -118.57 -1.93 -8.58 16 15 O -0.66 -1.78 10.05 -61.49 -0.62 -2.40 16 16 C 0.04 -0.01 4.80 22.51 0.11 0.10 16 17 C -0.13 0.79 8.46 22.37 0.19 0.98 16 18 C -0.07 0.51 9.68 22.26 0.22 0.72 16 19 C -0.10 0.53 5.35 -19.85 -0.11 0.43 16 20 C -0.08 0.47 2.80 71.23 0.20 0.67 16 21 O -0.54 1.61 12.83 -148.98 -1.91 -0.30 16 22 Si 0.75 -3.88 29.88 68.60 2.05 -1.84 16 23 C -0.10 0.41 8.66 22.25 0.19 0.60 16 24 C -0.10 0.01 9.05 22.37 0.20 0.21 16 25 C -0.15 0.48 7.08 31.12 0.22 0.70 16 26 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.07 -0.07 8.13 -2.39 -0.02 -0.08 16 30 H 0.07 -0.02 8.13 -2.38 -0.02 -0.04 16 31 H 0.13 -0.83 7.39 -2.39 -0.02 -0.85 16 32 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.19 -2.32 6.38 -2.39 -0.02 -2.33 16 34 H 0.19 -2.13 8.14 -2.39 -0.02 -2.15 16 35 H 0.17 -2.25 7.46 -2.91 -0.02 -2.27 16 36 H 0.16 -1.71 8.06 -2.91 -0.02 -1.73 16 37 H 0.14 -1.22 7.96 -2.39 -0.02 -1.24 16 38 H 0.39 -3.07 8.70 -74.06 -0.64 -3.71 16 39 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 40 H -0.28 0.26 7.01 99.48 0.70 0.96 16 41 H 0.16 -1.14 4.83 -2.91 -0.01 -1.15 16 42 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 43 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.13 -0.81 7.91 -2.38 -0.02 -0.83 16 Total: 0.00 -28.15 385.44 -0.32 -28.46 By element: Atomic # 1 Polarization: -19.35 SS G_CDS: 0.43 Total: -18.92 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 3.46 Total: 12.62 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -6.72 Total: -30.16 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.73 Total: -0.02 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.05 Total: -1.84 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -0.28 Total: 9.85 kcal Total: -28.15 -0.32 -28.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.441 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds