Wall clock time and date at job start Mon Mar 8 2021 13:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38268 * 119.94292 * 244.72777 * 4 2 1 6 6 C 1.38149 * 120.05340 * 179.72585 * 5 4 2 7 7 C 1.38731 * 119.94415 * 0.54416 * 6 5 4 8 8 O 1.35900 * 120.05787 * 179.74760 * 7 6 5 9 9 S 1.52205 * 113.99998 * 269.98595 * 8 7 6 10 10 O 1.42097 * 104.27571 * 191.07164 * 9 8 7 11 11 O 1.42104 * 104.27525 * 318.92650 * 9 8 7 12 12 C 1.81395 * 104.45370 * 74.99510 * 9 8 7 13 13 H 1.09000 * 112.84572 * 53.80172 * 12 9 8 14 14 C 1.53779 * 113.61701 * 185.00121 * 12 9 8 15 15 C 1.53778 * 87.08148 * 89.11630 * 14 12 9 16 16 H 1.09001 * 113.61722 * 270.80252 * 15 14 12 17 17 C 1.50704 * 113.61365 * 139.98163 * 15 14 12 18 18 C 1.38235 * 119.99721 * 299.72615 * 17 15 14 19 19 C 1.38236 * 119.99449 * 179.80920 * 18 17 15 20 20 C 1.38235 * 120.00333 * 0.41700 * 19 18 17 21 21 C 1.38235 * 119.99757 * 359.82012 * 20 19 18 22 22 C 1.38232 * 120.00150 * 359.97438 * 21 20 19 23 23 C 1.53776 * 113.61606 * 282.49824 * 12 9 8 24 24 C 1.38739 * 119.88806 * 359.73421 * 7 6 5 25 25 C 1.38142 * 119.94183 * 359.97438 * 24 7 6 26 26 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 27 27 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 28 28 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 29 29 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 30 30 H 1.07997 * 119.97326 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.02598 * 180.27714 * 6 5 4 32 32 H 1.08998 * 113.61262 * 203.66763 * 14 12 9 33 33 H 1.09005 * 113.61237 * 334.48015 * 14 12 9 34 34 H 1.07994 * 120.00470 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.99985 * 180.21057 * 19 18 17 36 36 H 1.08002 * 120.00107 * 179.78630 * 20 19 18 37 37 H 1.07998 * 120.00121 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00213 * 179.97438 * 22 21 20 39 39 H 1.09002 * 113.61731 * 25.43274 * 23 12 9 40 40 H 1.08998 * 113.61485 * 156.33021 * 23 12 9 41 41 H 1.07999 * 120.02496 * 180.02562 * 24 7 6 42 42 H 1.07995 * 119.96818 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6436 -0.0121 2.1880 6 6 3.1003 -0.6598 3.3196 7 6 2.8534 -2.0143 3.4894 8 8 3.3060 -2.6549 4.5993 9 16 4.7004 -3.2459 4.4476 10 8 4.8574 -4.0718 5.5932 11 8 4.7058 -3.7997 3.1389 12 6 5.8110 -1.8146 4.5375 13 1 5.6523 -1.2112 5.4313 14 6 7.2871 -2.1633 4.2838 15 6 7.0068 -1.9192 2.7917 16 1 6.6676 -2.8083 2.2599 17 6 8.1222 -1.2001 2.0776 18 6 8.5039 0.0636 2.4878 19 6 9.5297 0.7215 1.8352 20 6 10.1679 0.1194 0.7671 21 6 9.7829 -1.1423 0.3538 22 6 8.7600 -1.8020 1.0090 23 6 5.8635 -0.9930 3.2387 24 6 2.1434 -2.7139 2.5244 25 6 1.6838 -2.0604 1.3975 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 1.5879 2.4585 -1.2243 29 1 1.5614 2.4679 1.2084 30 1 2.8397 1.0413 2.0532 31 1 3.6527 -0.1130 4.0694 32 1 7.9856 -1.4488 4.7194 33 1 7.5380 -3.1977 4.5189 34 1 8.0031 0.5354 3.3202 35 1 9.8302 1.7074 2.1578 36 1 10.9670 0.6349 0.2551 37 1 10.2812 -1.6126 -0.4809 38 1 8.4589 -2.7876 0.6859 39 1 4.9648 -1.0829 2.6285 40 1 6.1728 0.0414 3.3885 41 1 1.9496 -3.7684 2.6545 42 1 1.1314 -2.6046 0.6458 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79476_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:27:34 Heat of formation + Delta-G solvation = -36.922440 kcal Electronic energy + Delta-G solvation = -28849.304932 eV Core-core repulsion = 24855.358255 eV Total energy + Delta-G solvation = -3993.946677 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.096 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.33415 -41.18990 -39.83073 -38.99682 -38.17545 -37.64235 -37.15504 -32.60340 -32.45935 -32.15388 -31.81461 -27.25369 -27.01434 -26.94838 -24.34261 -23.81473 -23.43107 -22.91403 -21.58821 -20.90626 -19.47111 -18.76400 -18.64139 -18.34224 -18.08506 -17.34829 -17.23702 -16.56937 -16.28113 -16.13538 -15.77472 -15.58074 -15.27108 -15.07801 -14.79647 -14.52192 -14.42459 -14.30407 -14.20999 -13.94817 -13.87424 -13.82967 -13.50620 -13.27647 -13.24607 -13.20221 -13.09620 -12.60695 -12.51092 -12.29502 -12.02087 -11.91046 -11.86486 -11.55829 -11.38154 -10.68170 -10.21986 -9.95885 -9.84777 -9.61240 -5.11753 -1.09685 -0.12859 0.04068 0.37969 0.47371 1.00883 1.09697 1.45072 1.80551 2.21281 2.44780 2.64403 2.78813 3.00410 3.09697 3.25997 3.45834 3.52372 3.53292 3.61606 3.65773 3.85440 3.94254 4.00313 4.05179 4.07784 4.10153 4.21225 4.28379 4.31332 4.36996 4.41713 4.53848 4.56108 4.61107 4.67343 4.70088 4.73864 4.89172 5.01662 5.05679 5.06273 5.13540 5.21176 5.54069 5.56908 5.61317 5.67912 6.06530 6.27023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.080 4.080 3 Si 0.682 3.318 4 C -0.051 4.051 5 C -0.105 4.105 6 C -0.114 4.114 7 C 0.064 3.936 8 O -0.661 6.661 9 S 2.611 3.389 10 O -0.923 6.923 11 O -0.942 6.942 12 C -0.659 4.659 13 H 0.151 0.849 14 C -0.086 4.086 15 C -0.090 4.090 16 H 0.122 0.878 17 C -0.070 4.070 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.076 4.076 26 H 0.383 0.617 27 H 0.084 0.916 28 H -0.258 1.258 29 H -0.252 1.252 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.144 0.856 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 4.866 -4.088 6.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.190 4.190 3 Si 0.582 3.418 4 C -0.052 4.052 5 C -0.122 4.122 6 C -0.134 4.134 7 C 0.023 3.977 8 O -0.620 6.620 9 S 2.704 3.296 10 O -0.921 6.921 11 O -0.940 6.940 12 C -0.766 4.766 13 H 0.169 0.831 14 C -0.125 4.125 15 C -0.108 4.108 16 H 0.140 0.860 17 C -0.070 4.070 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.094 4.094 26 H 0.232 0.768 27 H 0.102 0.898 28 H -0.183 1.183 29 H -0.176 1.176 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.162 0.838 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.989 4.701 -3.366 6.115 hybrid contribution -0.695 0.361 -0.080 0.787 sum 1.294 5.062 -3.446 6.259 Atomic orbital electron populations 1.86585 1.17313 1.80253 1.49998 1.24830 0.84891 1.11194 0.98055 0.95089 0.91503 0.74436 0.80753 1.19471 0.96690 0.94063 0.95004 1.20864 0.98505 1.00072 0.92777 1.21236 1.00989 0.92321 0.98873 1.18054 1.03926 0.91353 0.84377 1.85724 1.53862 1.75542 1.46839 1.05089 0.74142 0.75721 0.74619 1.93662 1.83904 1.62955 1.51609 1.93645 1.84051 1.75880 1.40433 1.32567 1.14041 1.21010 1.08965 0.83123 1.22642 0.90816 1.03432 0.95569 1.21940 0.94092 0.99807 0.95004 0.86044 1.19516 0.96736 0.94592 0.96189 1.20997 0.97715 0.94660 1.00198 1.21159 0.96229 1.00004 0.96166 1.21216 0.99979 0.95574 0.97211 1.21201 0.97215 0.95183 0.99872 1.21127 0.96261 1.00099 0.95531 1.23137 1.00212 0.99584 0.91168 1.21377 0.95332 1.01272 0.92382 1.20969 0.97776 0.93647 0.96977 0.76834 0.89825 1.18255 1.17630 0.83965 0.83556 0.87399 0.90072 0.86038 0.86004 0.86053 0.85913 0.85786 0.88866 0.87375 0.83773 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.25 12.81 -35.23 -0.45 -0.20 16 2 C -0.08 0.15 2.79 36.01 0.10 0.25 16 3 Si 0.68 -1.74 29.84 -169.99 -5.07 -6.82 16 4 C -0.05 0.03 5.39 -104.60 -0.56 -0.53 16 5 C -0.10 0.16 8.51 -39.60 -0.34 -0.17 16 6 C -0.11 0.14 6.24 -39.43 -0.25 -0.11 16 7 C 0.06 0.07 4.34 -39.21 -0.17 -0.10 16 8 O -0.66 -1.34 10.05 -51.75 -0.52 -1.86 16 9 S 2.61 4.93 5.07 -107.50 -0.55 4.38 16 10 O -0.92 -5.28 18.09 -67.04 -1.21 -6.49 16 11 O -0.94 -2.83 14.53 -67.04 -0.97 -3.80 16 12 C -0.66 1.16 4.13 -25.92 -0.11 1.06 16 13 H 0.15 -0.59 8.14 -51.93 -0.42 -1.02 16 14 C -0.09 0.14 7.15 -25.92 -0.19 -0.05 16 15 C -0.09 0.10 3.59 -90.96 -0.33 -0.23 16 16 H 0.12 -0.07 6.84 -51.93 -0.36 -0.42 16 17 C -0.07 0.03 5.29 -104.62 -0.55 -0.52 16 18 C -0.12 0.13 8.62 -39.58 -0.34 -0.21 16 19 C -0.12 0.09 10.05 -39.58 -0.40 -0.30 16 20 C -0.12 0.06 10.05 -39.58 -0.40 -0.34 16 21 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 22 C -0.11 0.01 9.71 -39.58 -0.38 -0.38 16 23 C -0.10 0.27 5.28 -25.92 -0.14 0.13 16 24 C -0.08 -0.09 9.05 -39.43 -0.36 -0.44 16 25 C -0.08 0.00 9.68 -39.61 -0.38 -0.38 16 26 H 0.38 -1.65 8.74 45.56 0.40 -1.25 16 27 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 28 H -0.26 0.08 7.11 56.52 0.40 0.48 16 29 H -0.25 -0.07 7.05 56.52 0.40 0.33 16 30 H 0.14 -0.53 4.86 -52.49 -0.26 -0.79 16 31 H 0.15 -0.58 7.16 -52.49 -0.38 -0.95 16 32 H 0.11 -0.29 7.73 -51.93 -0.40 -0.69 16 33 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 34 H 0.12 -0.36 6.64 -52.49 -0.35 -0.71 16 35 H 0.12 -0.29 8.06 -52.48 -0.42 -0.71 16 36 H 0.12 -0.23 8.06 -52.49 -0.42 -0.66 16 37 H 0.12 -0.21 8.06 -52.49 -0.42 -0.64 16 38 H 0.12 -0.14 8.05 -52.49 -0.42 -0.57 16 39 H 0.09 -0.25 4.55 -51.93 -0.24 -0.49 16 40 H 0.11 -0.48 6.30 -51.93 -0.33 -0.80 16 41 H 0.14 0.04 8.06 -52.49 -0.42 -0.39 16 42 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 349.82 15.07 5.27 5.27 Total: 0.00 -9.79 349.82 -13.58 -23.37 By element: Atomic # 1 Polarization: -6.26 SS G_CDS: -4.90 Total: -11.16 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -5.18 Total: -2.70 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -3.16 Total: -12.35 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.07 Total: -6.82 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -0.55 Total: 4.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -9.79 -13.58 -23.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.549 kcal (2) G-P(sol) polarization free energy of solvation -9.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds