Wall clock time and date at job start Mon Mar 8 2021 13:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38268 * 119.94292 * 244.72777 * 4 2 1 6 6 C 1.38149 * 120.05340 * 179.72585 * 5 4 2 7 7 C 1.38731 * 119.94415 * 0.54416 * 6 5 4 8 8 O 1.35900 * 120.05787 * 179.74760 * 7 6 5 9 9 S 1.52205 * 113.99998 * 269.98595 * 8 7 6 10 10 O 1.42097 * 104.27571 * 191.07164 * 9 8 7 11 11 O 1.42104 * 104.27525 * 318.92650 * 9 8 7 12 12 C 1.81395 * 104.45370 * 74.99510 * 9 8 7 13 13 H 1.09000 * 112.84572 * 53.80172 * 12 9 8 14 14 C 1.53779 * 113.61701 * 185.00121 * 12 9 8 15 15 C 1.53778 * 87.08148 * 89.11630 * 14 12 9 16 16 H 1.09001 * 113.61722 * 270.80252 * 15 14 12 17 17 C 1.50704 * 113.61365 * 139.98163 * 15 14 12 18 18 C 1.38235 * 119.99721 * 299.72615 * 17 15 14 19 19 C 1.38236 * 119.99449 * 179.80920 * 18 17 15 20 20 C 1.38235 * 120.00333 * 0.41700 * 19 18 17 21 21 C 1.38235 * 119.99757 * 359.82012 * 20 19 18 22 22 C 1.38232 * 120.00150 * 359.97438 * 21 20 19 23 23 C 1.53776 * 113.61606 * 282.49824 * 12 9 8 24 24 C 1.38739 * 119.88806 * 359.73421 * 7 6 5 25 25 C 1.38142 * 119.94183 * 359.97438 * 24 7 6 26 26 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 27 27 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 28 28 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 29 29 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 30 30 H 1.07997 * 119.97326 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.02598 * 180.27714 * 6 5 4 32 32 H 1.08998 * 113.61262 * 203.66763 * 14 12 9 33 33 H 1.09005 * 113.61237 * 334.48015 * 14 12 9 34 34 H 1.07994 * 120.00470 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.99985 * 180.21057 * 19 18 17 36 36 H 1.08002 * 120.00107 * 179.78630 * 20 19 18 37 37 H 1.07998 * 120.00121 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00213 * 179.97438 * 22 21 20 39 39 H 1.09002 * 113.61731 * 25.43274 * 23 12 9 40 40 H 1.08998 * 113.61485 * 156.33021 * 23 12 9 41 41 H 1.07999 * 120.02496 * 180.02562 * 24 7 6 42 42 H 1.07995 * 119.96818 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6436 -0.0121 2.1880 6 6 3.1003 -0.6598 3.3196 7 6 2.8534 -2.0143 3.4894 8 8 3.3060 -2.6549 4.5993 9 16 4.7004 -3.2459 4.4476 10 8 4.8574 -4.0718 5.5932 11 8 4.7058 -3.7997 3.1389 12 6 5.8110 -1.8146 4.5375 13 1 5.6523 -1.2112 5.4313 14 6 7.2871 -2.1633 4.2838 15 6 7.0068 -1.9192 2.7917 16 1 6.6676 -2.8083 2.2599 17 6 8.1222 -1.2001 2.0776 18 6 8.5039 0.0636 2.4878 19 6 9.5297 0.7215 1.8352 20 6 10.1679 0.1194 0.7671 21 6 9.7829 -1.1423 0.3538 22 6 8.7600 -1.8020 1.0090 23 6 5.8635 -0.9930 3.2387 24 6 2.1434 -2.7139 2.5244 25 6 1.6838 -2.0604 1.3975 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 1.5879 2.4585 -1.2243 29 1 1.5614 2.4679 1.2084 30 1 2.8397 1.0413 2.0532 31 1 3.6527 -0.1130 4.0694 32 1 7.9856 -1.4488 4.7194 33 1 7.5380 -3.1977 4.5189 34 1 8.0031 0.5354 3.3202 35 1 9.8302 1.7074 2.1578 36 1 10.9670 0.6349 0.2551 37 1 10.2812 -1.6126 -0.4809 38 1 8.4589 -2.7876 0.6859 39 1 4.9648 -1.0829 2.6285 40 1 6.1728 0.0414 3.3885 41 1 1.9496 -3.7684 2.6545 42 1 1.1314 -2.6046 0.6458 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79476_17781816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:27:33 Heat of formation + Delta-G solvation = -35.655583 kcal Electronic energy + Delta-G solvation = -28849.249997 eV Core-core repulsion = 24855.358255 eV Total energy + Delta-G solvation = -3993.891742 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.096 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.33649 -41.06400 -39.77361 -38.90432 -38.33523 -37.54778 -37.33913 -32.51191 -32.38761 -32.04201 -31.68687 -27.11791 -26.89447 -26.83293 -24.25855 -23.71653 -23.37769 -22.81523 -21.56734 -20.83193 -19.50587 -18.78839 -18.58200 -18.22760 -18.02560 -17.26944 -17.15578 -16.51034 -16.18686 -16.10492 -15.69684 -15.49632 -15.16599 -14.99118 -14.68652 -14.51504 -14.31998 -14.25580 -14.12464 -13.95714 -13.78979 -13.69767 -13.54321 -13.35879 -13.28161 -13.14852 -13.12793 -12.52162 -12.40132 -12.20529 -11.89917 -11.79734 -11.75250 -11.42372 -11.26573 -10.52752 -10.14818 -9.89312 -9.73739 -9.49892 -4.90893 -1.15212 -0.10195 0.12365 0.49095 0.58245 0.95934 1.28893 1.62919 1.97190 2.28209 2.42772 2.66606 2.89416 3.11636 3.28297 3.29004 3.57550 3.64438 3.68123 3.77131 3.80200 3.92509 4.08930 4.12947 4.19711 4.23007 4.24431 4.37464 4.44806 4.48271 4.55763 4.63107 4.69503 4.71580 4.78125 4.79408 4.83058 4.87926 4.96023 5.11068 5.17651 5.21957 5.26797 5.28912 5.64392 5.66092 5.72821 5.79449 6.19809 6.57578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.093 4.093 3 Si 0.765 3.235 4 C -0.059 4.059 5 C -0.104 4.104 6 C -0.109 4.109 7 C 0.041 3.959 8 O -0.669 6.669 9 S 2.604 3.396 10 O -0.974 6.974 11 O -0.965 6.965 12 C -0.636 4.636 13 H 0.183 0.817 14 C -0.092 4.092 15 C -0.098 4.098 16 H 0.106 0.894 17 C -0.074 4.074 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.099 4.099 24 C -0.106 4.106 25 C -0.085 4.085 26 H 0.397 0.603 27 H 0.102 0.898 28 H -0.289 1.289 29 H -0.286 1.286 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 7.512 -3.965 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.201 4.201 3 Si 0.670 3.330 4 C -0.060 4.060 5 C -0.121 4.121 6 C -0.128 4.128 7 C 0.000 4.000 8 O -0.628 6.628 9 S 2.703 3.297 10 O -0.973 6.973 11 O -0.963 6.963 12 C -0.747 4.747 13 H 0.201 0.799 14 C -0.130 4.130 15 C -0.116 4.116 16 H 0.124 0.876 17 C -0.074 4.074 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.103 4.103 26 H 0.248 0.752 27 H 0.120 0.880 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.707 7.281 -3.258 8.424 hybrid contribution -0.947 -0.415 -0.200 1.054 sum 1.760 6.866 -3.458 7.887 Atomic orbital electron populations 1.86541 1.18167 1.80818 1.51213 1.25107 0.84408 1.12285 0.98267 0.94202 0.90047 0.71749 0.77030 1.19755 0.96588 0.93884 0.95763 1.21179 0.97682 1.01084 0.92161 1.21595 1.00436 0.91276 0.99531 1.18368 1.04869 0.92455 0.84327 1.85687 1.54073 1.75866 1.47204 1.05054 0.74572 0.76776 0.73304 1.93592 1.84844 1.65766 1.53057 1.93606 1.84504 1.77366 1.40840 1.32251 1.12405 1.18847 1.11184 0.79913 1.22808 0.91053 1.03847 0.95320 1.21944 0.94707 0.99840 0.95124 0.87580 1.19614 0.96766 0.95031 0.96020 1.21261 0.97575 0.94207 1.00635 1.21446 0.96181 1.00755 0.95910 1.21452 1.00503 0.95611 0.97735 1.21377 0.97462 0.95647 1.00333 1.21300 0.96881 1.00461 0.96347 1.23309 0.99659 1.00653 0.89996 1.21505 0.96383 1.01363 0.93329 1.21090 0.98093 0.94322 0.96838 0.75166 0.88032 1.21656 1.21328 0.81520 0.80358 0.85344 0.90673 0.83583 0.84362 0.85081 0.85316 0.85901 0.88706 0.84194 0.84542 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.69 12.81 -148.98 -1.91 -1.22 16 2 C -0.09 0.42 2.79 71.24 0.20 0.62 16 3 Si 0.77 -4.92 29.84 68.60 2.05 -2.88 16 4 C -0.06 0.10 5.39 -19.85 -0.11 -0.01 16 5 C -0.10 0.49 8.51 22.26 0.19 0.68 16 6 C -0.11 0.41 6.24 22.37 0.14 0.55 16 7 C 0.04 0.11 4.34 22.51 0.10 0.21 16 8 O -0.67 -3.50 10.05 -61.52 -0.62 -4.12 16 9 S 2.60 13.28 5.07 -56.49 -0.29 12.99 16 10 O -0.97 -13.41 18.09 -118.57 -2.15 -15.56 16 11 O -0.96 -7.99 14.53 -118.57 -1.72 -9.71 16 12 C -0.64 3.17 4.13 31.12 0.13 3.30 16 13 H 0.18 -2.03 8.14 -2.39 -0.02 -2.05 16 14 C -0.09 0.39 7.15 31.12 0.22 0.61 16 15 C -0.10 0.28 3.59 -11.02 -0.04 0.24 16 16 H 0.11 0.02 6.84 -2.39 -0.02 0.00 16 17 C -0.07 0.14 5.29 -19.86 -0.11 0.03 16 18 C -0.12 0.52 8.62 22.27 0.19 0.72 16 19 C -0.13 0.41 10.05 22.27 0.22 0.63 16 20 C -0.14 0.20 10.05 22.27 0.22 0.42 16 21 C -0.13 0.03 10.05 22.27 0.22 0.25 16 22 C -0.13 -0.05 9.71 22.27 0.22 0.17 16 23 C -0.10 0.73 5.28 31.12 0.16 0.89 16 24 C -0.11 -0.40 9.05 22.37 0.20 -0.20 16 25 C -0.09 -0.08 9.68 22.25 0.22 0.14 16 26 H 0.40 -3.54 8.74 -74.06 -0.65 -4.19 16 27 H 0.10 -0.84 7.96 -2.39 -0.02 -0.86 16 28 H -0.29 0.35 7.11 99.48 0.71 1.05 16 29 H -0.29 0.17 7.05 99.48 0.70 0.87 16 30 H 0.17 -1.69 4.86 -2.91 -0.01 -1.71 16 31 H 0.18 -1.99 7.16 -2.91 -0.02 -2.01 16 32 H 0.13 -1.02 7.73 -2.39 -0.02 -1.04 16 33 H 0.07 -0.22 8.10 -2.38 -0.02 -0.24 16 34 H 0.15 -1.45 6.64 -2.91 -0.02 -1.47 16 35 H 0.14 -0.98 8.06 -2.91 -0.02 -1.00 16 36 H 0.13 -0.57 8.06 -2.91 -0.02 -0.60 16 37 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 38 H 0.12 -0.08 8.05 -2.91 -0.02 -0.11 16 39 H 0.09 -0.67 4.55 -2.39 -0.01 -0.69 16 40 H 0.14 -1.86 6.30 -2.39 -0.02 -1.88 16 41 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.15 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -25.44 349.82 -1.80 -27.24 By element: Atomic # 1 Polarization: -16.46 SS G_CDS: 0.45 Total: -16.02 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 2.39 Total: 9.27 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -6.39 Total: -30.61 kcal Atomic # 14 Polarization: -4.92 SS G_CDS: 2.05 Total: -2.88 kcal Atomic # 16 Polarization: 13.28 SS G_CDS: -0.29 Total: 12.99 kcal Total: -25.44 -1.80 -27.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_17781816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.413 kcal (2) G-P(sol) polarization free energy of solvation -25.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds