Wall clock time and date at job start Mon Mar 8 2021 12:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99846 * 2 1 4 4 O 1.20824 * 120.00280 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99939 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.84755 * 48.80882 * 5 3 2 7 7 C 1.53788 * 113.61295 * 179.97438 * 5 3 2 8 8 C 1.53781 * 87.07742 * 140.06519 * 7 5 3 9 9 H 1.09005 * 113.61031 * 89.19992 * 8 7 5 10 10 S 1.81398 * 113.61440 * 220.01641 * 8 7 5 11 11 O 1.42101 * 110.54264 * 68.37843 * 10 8 7 12 12 O 1.42096 * 110.54357 * 291.62760 * 10 8 7 13 13 O 1.52197 * 104.44963 * 180.02562 * 10 8 7 14 14 C 1.35895 * 114.00320 * 75.00323 * 13 10 8 15 15 C 1.38709 * 120.05826 * 89.99715 * 14 13 10 16 16 C 1.50705 * 120.02722 * 0.04702 * 15 14 13 17 17 O 1.42896 * 109.46877 * 284.97736 * 16 15 14 18 18 Si 1.86298 * 109.47019 * 164.97816 * 16 15 14 19 19 C 1.38164 * 119.94688 * 180.02562 * 15 14 13 20 20 C 1.38245 * 120.05645 * 359.97438 * 19 15 14 21 21 C 1.38290 * 120.10982 * 0.02562 * 20 19 15 22 22 C 1.38126 * 120.05768 * 0.02562 * 21 20 19 23 23 C 1.53779 * 87.08563 * 334.56872 * 8 7 5 24 24 H 1.08996 * 109.47137 * 299.99556 * 1 2 3 25 25 H 1.08999 * 109.47029 * 60.00353 * 1 2 3 26 26 H 1.09004 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.08998 * 113.61039 * 25.52181 * 7 5 3 28 28 H 1.08999 * 113.68940 * 254.62668 * 7 5 3 29 29 H 1.09001 * 109.46566 * 44.97895 * 16 15 14 30 30 H 0.96694 * 114.00335 * 299.99667 * 17 16 15 31 31 H 1.48495 * 110.00504 * 58.68249 * 18 16 15 32 32 H 1.48502 * 109.99951 * 180.02562 * 18 16 15 33 33 H 1.07997 * 119.97398 * 179.97438 * 19 15 14 34 34 H 1.07995 * 119.94685 * 179.74958 * 20 19 15 35 35 H 1.08005 * 119.97140 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.03128 * 180.02562 * 22 21 20 37 37 H 1.09005 * 113.61654 * 139.97613 * 23 8 7 38 38 H 1.09003 * 113.61508 * 270.88612 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6363 -0.7550 7 6 4.1077 2.7143 -0.0001 8 6 5.1819 2.2270 0.9865 9 1 6.0818 1.8496 0.5008 10 16 5.5411 3.4112 2.3129 11 8 4.4303 3.5282 3.1912 12 8 6.1866 4.5643 1.7905 13 8 6.6128 2.7290 3.1510 14 6 7.8457 2.7301 2.5794 15 6 8.7232 3.7766 2.8222 16 6 8.3107 4.9135 3.7214 17 8 7.3927 5.7606 3.0274 18 14 9.8159 5.8968 4.2094 19 6 9.9759 3.7756 2.2394 20 6 10.3553 2.7326 1.4152 21 6 9.4823 1.6881 1.1715 22 6 8.2284 1.6849 1.7509 23 6 4.1925 1.1237 1.3970 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.4176 3.4405 0.4294 28 1 4.5099 3.0305 -0.9626 29 1 7.8319 4.5141 4.6155 30 1 7.7521 6.1518 2.2196 31 1 10.4957 6.4201 2.9973 32 1 9.4226 7.0207 5.0968 33 1 10.6592 4.5904 2.4278 34 1 11.3333 2.7356 0.9573 35 1 9.7809 0.8745 0.5269 36 1 7.5472 0.8688 1.5607 37 1 4.6630 0.1544 1.5618 38 1 3.5255 1.4151 2.2084 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79477_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:27:39 Heat of formation + Delta-G solvation = -141.634550 kcal Electronic energy + Delta-G solvation = -27318.442911 eV Core-core repulsion = 23222.807232 eV Total energy + Delta-G solvation = -4095.635679 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.079 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.36231 -41.89155 -39.63146 -39.38881 -38.10751 -37.62138 -37.33518 -36.88958 -32.93379 -31.60853 -29.90900 -27.79593 -27.25830 -26.94847 -24.74349 -23.42614 -23.05368 -21.61080 -20.82287 -19.76718 -19.10025 -18.78181 -18.39851 -18.08601 -17.65484 -17.48748 -16.88907 -16.78591 -16.48091 -16.13360 -15.87628 -15.71666 -15.11928 -14.80573 -14.51420 -14.30388 -14.15700 -14.03418 -13.95245 -13.83167 -13.53081 -13.38641 -13.24281 -13.11405 -13.01015 -12.92694 -12.72775 -12.47709 -12.04265 -12.03375 -11.81787 -11.73472 -11.61696 -11.23745 -10.41207 -10.26980 -10.06562 -4.97496 -1.02997 -0.09018 -0.05078 1.03023 1.13516 1.23076 1.54103 1.63127 1.95753 2.26073 2.51945 2.63976 2.87652 3.08022 3.15338 3.31912 3.41072 3.50837 3.55323 3.72802 3.80902 3.92651 3.99130 4.04502 4.09201 4.14961 4.23301 4.25095 4.28666 4.40822 4.42513 4.50087 4.58803 4.62790 4.80217 4.81753 4.89293 5.02257 5.12003 5.32795 5.56315 6.66142 6.66401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.137 0.863 7 C -0.085 4.085 8 C -0.662 4.662 9 H 0.159 0.841 10 S 2.597 3.403 11 O -0.919 6.919 12 O -0.912 6.912 13 O -0.659 6.659 14 C 0.088 3.912 15 C -0.086 4.086 16 C -0.099 4.099 17 O -0.491 6.491 18 Si 0.692 3.308 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.097 4.097 22 C -0.132 4.132 23 C -0.093 4.093 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.381 0.619 31 H -0.256 1.256 32 H -0.253 1.253 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -6.003 -3.142 9.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.116 4.116 6 H 0.155 0.845 7 C -0.123 4.123 8 C -0.767 4.767 9 H 0.176 0.824 10 S 2.689 3.311 11 O -0.918 6.918 12 O -0.911 6.911 13 O -0.618 6.618 14 C 0.046 3.954 15 C -0.089 4.089 16 C -0.208 4.208 17 O -0.299 6.299 18 Si 0.592 3.408 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.131 4.131 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.231 0.769 31 H -0.181 1.181 32 H -0.178 1.178 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.122 0.878 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.828 -4.603 -2.074 7.711 hybrid contribution -1.043 -0.287 -1.488 1.840 sum 4.785 -4.890 -3.562 7.713 Atomic orbital electron populations 1.23360 0.75693 1.04122 1.02904 1.86502 1.23929 1.33027 1.83773 1.23475 0.91528 0.81661 0.72464 1.90710 1.66842 1.36386 1.44576 1.22440 0.87857 1.00212 1.01106 0.84545 1.22577 0.94064 0.95783 0.99896 1.32411 1.07804 1.16915 1.19547 0.82350 1.05694 0.74404 0.75230 0.75727 1.93657 1.51747 1.84976 1.61392 1.93676 1.71312 1.45223 1.80862 1.85728 1.28055 1.85518 1.62491 1.17802 0.82385 0.96964 0.98205 1.20515 0.93971 0.95735 0.98695 1.25214 1.05122 0.93414 0.97074 1.86753 1.38240 1.63560 1.41309 0.95204 0.78797 0.83616 0.83139 1.21204 0.94852 0.99625 0.96787 1.21396 1.00207 0.93122 0.96639 1.21147 0.92376 0.98998 0.98996 1.21419 0.98797 0.97543 0.97396 1.22637 0.95644 0.98505 0.96270 0.91548 0.91642 0.87725 0.87425 0.87811 0.86278 0.76928 1.18108 1.17812 0.83958 0.84251 0.84045 0.84039 0.87783 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.49 10.57 -39.26 -0.41 -0.90 16 3 C 0.47 0.99 7.49 36.01 0.27 1.26 16 4 O -0.50 -2.62 15.65 -18.75 -0.29 -2.91 16 5 C -0.10 0.10 4.26 -90.95 -0.39 -0.28 16 6 H 0.14 -0.53 8.14 -51.93 -0.42 -0.95 16 7 C -0.08 0.05 6.99 -25.92 -0.18 -0.13 16 8 C -0.66 0.90 4.03 -25.92 -0.10 0.79 16 9 H 0.16 -0.69 6.10 -51.93 -0.32 -1.01 16 10 S 2.60 7.00 5.09 -107.50 -0.55 6.46 16 11 O -0.92 -6.08 17.27 -67.03 -1.16 -7.24 16 12 O -0.91 -3.47 12.06 -70.98 -0.86 -4.33 16 13 O -0.66 -1.44 9.40 -51.74 -0.49 -1.92 16 14 C 0.09 0.06 4.78 -39.21 -0.19 -0.13 16 15 C -0.09 -0.04 4.87 -104.47 -0.51 -0.55 16 16 C -0.10 -0.14 2.30 36.01 0.08 -0.05 16 17 O -0.49 -1.75 9.01 -60.50 -0.55 -2.30 16 18 Si 0.69 -0.51 30.25 -169.99 -5.14 -5.65 16 19 C -0.11 0.19 8.66 -39.61 -0.34 -0.16 16 20 C -0.09 0.30 10.04 -39.56 -0.40 -0.10 16 21 C -0.10 0.33 10.04 -39.60 -0.40 -0.07 16 22 C -0.13 0.28 8.50 -39.43 -0.34 -0.05 16 23 C -0.09 0.13 7.19 -25.92 -0.19 -0.06 16 24 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 25 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 27 H 0.11 0.12 7.39 -51.93 -0.38 -0.26 16 28 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 29 H 0.12 0.17 7.83 -51.93 -0.41 -0.23 16 30 H 0.38 0.45 8.35 45.56 0.38 0.83 16 31 H -0.26 -0.03 6.68 56.52 0.38 0.35 16 32 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 33 H 0.14 -0.46 4.86 -52.49 -0.26 -0.71 16 34 H 0.14 -0.77 8.06 -52.49 -0.42 -1.19 16 35 H 0.14 -0.84 8.06 -52.48 -0.42 -1.26 16 36 H 0.14 -0.68 7.25 -52.49 -0.38 -1.06 16 37 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 38 H 0.11 0.01 7.38 -51.93 -0.38 -0.37 16 LS Contribution 326.91 15.07 4.93 4.93 Total: 0.00 -11.17 326.91 -10.47 -21.64 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -4.35 Total: -9.30 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.61 Total: 1.53 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -3.75 Total: -19.60 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -5.14 Total: -5.65 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -0.55 Total: 6.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -11.17 -10.47 -21.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.994 kcal (2) G-P(sol) polarization free energy of solvation -11.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds