Wall clock time and date at job start Mon Mar 8 2021 12:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99846 * 2 1 4 4 O 1.20824 * 120.00280 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99939 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.84755 * 48.80882 * 5 3 2 7 7 C 1.53788 * 113.61295 * 179.97438 * 5 3 2 8 8 C 1.53781 * 87.07742 * 140.06519 * 7 5 3 9 9 H 1.09005 * 113.61031 * 89.19992 * 8 7 5 10 10 S 1.81398 * 113.61440 * 220.01641 * 8 7 5 11 11 O 1.42101 * 110.54264 * 68.37843 * 10 8 7 12 12 O 1.42096 * 110.54357 * 291.62760 * 10 8 7 13 13 O 1.52197 * 104.44963 * 180.02562 * 10 8 7 14 14 C 1.35895 * 114.00320 * 75.00323 * 13 10 8 15 15 C 1.38709 * 120.05826 * 89.99715 * 14 13 10 16 16 C 1.50705 * 120.02722 * 0.04702 * 15 14 13 17 17 O 1.42896 * 109.46877 * 284.97736 * 16 15 14 18 18 Si 1.86298 * 109.47019 * 164.97816 * 16 15 14 19 19 C 1.38164 * 119.94688 * 180.02562 * 15 14 13 20 20 C 1.38245 * 120.05645 * 359.97438 * 19 15 14 21 21 C 1.38290 * 120.10982 * 0.02562 * 20 19 15 22 22 C 1.38126 * 120.05768 * 0.02562 * 21 20 19 23 23 C 1.53779 * 87.08563 * 334.56872 * 8 7 5 24 24 H 1.08996 * 109.47137 * 299.99556 * 1 2 3 25 25 H 1.08999 * 109.47029 * 60.00353 * 1 2 3 26 26 H 1.09004 * 109.46835 * 179.97438 * 1 2 3 27 27 H 1.08998 * 113.61039 * 25.52181 * 7 5 3 28 28 H 1.08999 * 113.68940 * 254.62668 * 7 5 3 29 29 H 1.09001 * 109.46566 * 44.97895 * 16 15 14 30 30 H 0.96694 * 114.00335 * 299.99667 * 17 16 15 31 31 H 1.48495 * 110.00504 * 58.68249 * 18 16 15 32 32 H 1.48502 * 109.99951 * 180.02562 * 18 16 15 33 33 H 1.07997 * 119.97398 * 179.97438 * 19 15 14 34 34 H 1.07995 * 119.94685 * 179.74958 * 20 19 15 35 35 H 1.08005 * 119.97140 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.03128 * 180.02562 * 22 21 20 37 37 H 1.09005 * 113.61654 * 139.97613 * 23 8 7 38 38 H 1.09003 * 113.61508 * 270.88612 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6363 -0.7550 7 6 4.1077 2.7143 -0.0001 8 6 5.1819 2.2270 0.9865 9 1 6.0818 1.8496 0.5008 10 16 5.5411 3.4112 2.3129 11 8 4.4303 3.5282 3.1912 12 8 6.1866 4.5643 1.7905 13 8 6.6128 2.7290 3.1510 14 6 7.8457 2.7301 2.5794 15 6 8.7232 3.7766 2.8222 16 6 8.3107 4.9135 3.7214 17 8 7.3927 5.7606 3.0274 18 14 9.8159 5.8968 4.2094 19 6 9.9759 3.7756 2.2394 20 6 10.3553 2.7326 1.4152 21 6 9.4823 1.6881 1.1715 22 6 8.2284 1.6849 1.7509 23 6 4.1925 1.1237 1.3970 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.4176 3.4405 0.4294 28 1 4.5099 3.0305 -0.9626 29 1 7.8319 4.5141 4.6155 30 1 7.7521 6.1518 2.2196 31 1 10.4957 6.4201 2.9973 32 1 9.4226 7.0207 5.0968 33 1 10.6592 4.5904 2.4278 34 1 11.3333 2.7356 0.9573 35 1 9.7809 0.8745 0.5269 36 1 7.5472 0.8688 1.5607 37 1 4.6630 0.1544 1.5618 38 1 3.5255 1.4151 2.2084 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79477_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:27:38 Heat of formation + Delta-G solvation = -143.803985 kcal Electronic energy + Delta-G solvation = -27318.536985 eV Core-core repulsion = 23222.807232 eV Total energy + Delta-G solvation = -4095.729753 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.079 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31208 -41.97666 -39.62034 -39.30493 -38.33268 -37.73840 -37.50442 -37.09573 -32.79280 -31.42333 -29.91857 -27.76517 -27.16876 -26.90215 -24.62138 -23.45176 -22.98012 -21.60656 -20.77220 -19.83447 -19.14827 -18.83752 -18.49074 -18.15886 -17.65801 -17.52372 -16.84275 -16.71925 -16.48442 -16.13324 -15.92875 -15.66333 -15.01772 -14.83304 -14.55235 -14.25792 -14.22068 -14.07025 -13.96122 -13.81866 -13.51418 -13.36760 -13.27655 -13.20034 -13.07150 -12.97381 -12.73388 -12.47029 -11.98156 -11.92853 -11.90163 -11.75535 -11.65588 -11.30683 -10.45855 -10.08395 -9.89945 -4.96543 -1.10318 0.07598 0.13665 0.93510 1.06974 1.22265 1.52819 1.62950 1.93214 2.47344 2.53192 2.61202 2.89127 3.10738 3.16581 3.37830 3.55001 3.59032 3.72769 3.83542 3.97420 4.09099 4.19339 4.22749 4.24599 4.27459 4.30167 4.34523 4.38948 4.42461 4.58508 4.65318 4.67000 4.83005 4.90621 4.99868 5.11364 5.25292 5.27091 5.38342 5.81456 6.55110 6.59648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.461 3.539 4 O -0.541 6.541 5 C -0.088 4.088 6 H 0.179 0.821 7 C -0.100 4.100 8 C -0.629 4.629 9 H 0.201 0.799 10 S 2.585 3.415 11 O -0.980 6.980 12 O -0.935 6.935 13 O -0.668 6.668 14 C 0.053 3.947 15 C -0.107 4.107 16 C -0.125 4.125 17 O -0.518 6.518 18 Si 0.787 3.213 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.091 4.091 22 C -0.130 4.130 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.133 0.867 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.386 0.614 31 H -0.258 1.258 32 H -0.308 1.308 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 -8.791 -5.419 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.306 3.694 4 O -0.431 6.431 5 C -0.107 4.107 6 H 0.197 0.803 7 C -0.138 4.138 8 C -0.738 4.738 9 H 0.218 0.782 10 S 2.684 3.316 11 O -0.978 6.978 12 O -0.933 6.933 13 O -0.627 6.627 14 C 0.011 3.989 15 C -0.110 4.110 16 C -0.232 4.232 17 O -0.327 6.327 18 Si 0.690 3.310 19 C -0.132 4.132 20 C -0.108 4.108 21 C -0.109 4.109 22 C -0.150 4.150 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.121 0.879 30 H 0.236 0.764 31 H -0.184 1.184 32 H -0.236 1.236 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.337 -7.399 -4.327 11.957 hybrid contribution -1.832 0.520 -0.805 2.067 sum 6.505 -6.878 -5.132 10.768 Atomic orbital electron populations 1.23563 0.75027 1.05818 1.02405 1.86504 1.24738 1.32619 1.83360 1.24215 0.92896 0.81208 0.71112 1.90696 1.68036 1.37714 1.46624 1.22655 0.85598 1.00213 1.02234 0.80349 1.22718 0.94036 0.96053 1.01030 1.32192 1.09272 1.15212 1.17145 0.78174 1.05715 0.73574 0.76115 0.76192 1.93577 1.53905 1.86353 1.63958 1.93636 1.71291 1.47253 1.81133 1.85704 1.28850 1.85187 1.62959 1.18298 0.81803 0.98614 1.00158 1.20542 0.95295 0.95582 0.99588 1.25616 1.05916 0.94676 0.97012 1.86718 1.39916 1.64248 1.41837 0.94203 0.76691 0.80002 0.80117 1.21383 0.94044 1.00752 0.97006 1.21822 1.01418 0.92234 0.95339 1.21615 0.91406 0.99505 0.98357 1.21813 0.99994 0.97095 0.96127 1.22772 0.95298 1.00090 0.95464 0.92427 0.91875 0.84922 0.90262 0.85254 0.87940 0.76370 1.18373 1.23644 0.82902 0.81388 0.80628 0.81185 0.83928 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.88 10.57 -51.42 -0.54 -1.42 16 3 C 0.46 2.14 7.49 71.24 0.53 2.67 16 4 O -0.54 -6.79 15.65 21.97 0.34 -6.45 16 5 C -0.09 0.32 4.26 -11.01 -0.05 0.27 16 6 H 0.18 -2.14 8.14 -2.39 -0.02 -2.16 16 7 C -0.10 0.13 6.99 31.12 0.22 0.35 16 8 C -0.63 2.26 4.03 31.12 0.13 2.39 16 9 H 0.20 -2.48 6.10 -2.38 -0.01 -2.49 16 10 S 2.59 19.93 5.09 -56.49 -0.29 19.64 16 11 O -0.98 -17.27 17.27 -118.57 -2.05 -19.32 16 12 O -0.93 -9.66 12.06 -114.79 -1.38 -11.05 16 13 O -0.67 -4.12 9.40 -61.46 -0.58 -4.70 16 14 C 0.05 0.08 4.78 22.51 0.11 0.19 16 15 C -0.11 -0.18 4.87 -19.77 -0.10 -0.27 16 16 C -0.12 -0.66 2.30 71.24 0.16 -0.49 16 17 O -0.52 -5.47 9.01 -124.82 -1.12 -6.59 16 18 Si 0.79 -0.19 30.25 68.60 2.08 1.89 16 19 C -0.11 0.52 8.66 22.25 0.19 0.71 16 20 C -0.09 0.84 10.04 22.28 0.22 1.06 16 21 C -0.09 0.97 10.04 22.26 0.22 1.19 16 22 C -0.13 0.90 8.50 22.37 0.19 1.09 16 23 C -0.10 0.37 7.19 31.12 0.22 0.59 16 24 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 25 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 26 H 0.13 -0.88 8.14 -2.38 -0.02 -0.90 16 27 H 0.08 0.39 7.39 -2.39 -0.02 0.37 16 28 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.10 0.72 7.83 -2.39 -0.02 0.70 16 30 H 0.39 2.11 8.35 -74.06 -0.62 1.49 16 31 H -0.26 0.04 6.68 99.48 0.66 0.70 16 32 H -0.31 -2.61 7.11 99.48 0.71 -1.90 16 33 H 0.15 -1.16 4.86 -2.91 -0.01 -1.18 16 34 H 0.17 -2.56 8.06 -2.91 -0.02 -2.58 16 35 H 0.18 -3.05 8.06 -2.91 -0.02 -3.08 16 36 H 0.17 -2.32 7.25 -2.91 -0.02 -2.34 16 37 H 0.14 -1.64 8.14 -2.38 -0.02 -1.65 16 38 H 0.08 0.17 7.38 -2.39 -0.02 0.15 16 Total: 0.00 -32.97 326.91 0.19 -32.78 By element: Atomic # 1 Polarization: -16.20 SS G_CDS: 0.49 Total: -15.72 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 3.26 Total: 10.94 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -5.33 Total: -49.53 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: 2.08 Total: 1.89 kcal Atomic # 16 Polarization: 19.93 SS G_CDS: -0.29 Total: 19.64 kcal Total: -32.97 0.19 -32.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.027 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds