Wall clock time and date at job start Mon Mar 8 2021 11:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47033 * 2 1 4 4 C 1.50700 * 109.47156 * 240.00291 * 2 1 3 5 5 C 1.38707 * 120.02680 * 284.37772 * 4 2 1 6 6 O 1.35896 * 120.05747 * 359.74598 * 5 4 2 7 7 S 1.52200 * 113.99988 * 97.23785 * 6 5 4 8 8 O 1.42096 * 104.27808 * 192.83445 * 7 6 5 9 9 O 1.42098 * 104.27629 * 320.69498 * 7 6 5 10 10 C 1.81395 * 104.45021 * 76.76437 * 7 6 5 11 11 H 1.09004 * 112.85220 * 311.19826 * 10 7 6 12 12 C 1.53777 * 113.61542 * 82.50436 * 10 7 6 13 13 C 1.53778 * 87.08360 * 139.98191 * 12 10 7 14 14 H 1.09006 * 113.61544 * 220.01677 * 13 12 10 15 15 O 1.42903 * 113.61701 * 89.11620 * 13 12 10 16 16 C 1.42900 * 113.99986 * 112.50328 * 15 13 12 17 17 C 1.50706 * 109.47071 * 180.02562 * 16 15 13 18 18 C 1.38236 * 120.00126 * 269.73068 * 17 16 15 19 19 C 1.38234 * 119.99681 * 179.76503 * 18 17 16 20 20 C 1.38230 * 120.00302 * 0.48281 * 19 18 17 21 21 C 1.38243 * 119.99792 * 359.78915 * 20 19 18 22 22 C 1.38226 * 120.00215 * 359.95800 * 21 20 19 23 23 C 1.53780 * 87.08300 * 334.56574 * 13 12 10 24 24 C 1.38755 * 119.88978 * 179.72465 * 5 4 2 25 25 C 1.38127 * 119.94586 * 359.97438 * 24 5 4 26 26 C 1.38295 * 120.05027 * 0.02562 * 25 24 5 27 27 C 1.38173 * 120.02964 * 104.10430 * 4 2 1 28 28 H 0.96698 * 113.99830 * 60.00386 * 1 2 3 29 29 H 1.09000 * 109.47334 * 120.00048 * 2 1 3 30 30 H 1.48501 * 109.99984 * 298.68256 * 3 2 1 31 31 H 1.48498 * 109.99802 * 59.99806 * 3 2 1 32 32 H 1.09004 * 113.61567 * 254.53076 * 12 10 7 33 33 H 1.08994 * 113.61765 * 25.43401 * 12 10 7 34 34 H 1.09006 * 109.47237 * 299.99976 * 16 15 13 35 35 H 1.08998 * 109.47042 * 60.00474 * 16 15 13 36 36 H 1.08000 * 119.99536 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99584 * 180.24578 * 19 18 17 38 38 H 1.07994 * 120.00245 * 179.76415 * 20 19 18 39 39 H 1.08004 * 119.99499 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00429 * 179.97438 * 22 21 20 41 41 H 1.08996 * 113.61536 * 270.89002 * 23 13 12 42 42 H 1.08999 * 113.68992 * 139.98552 * 23 13 12 43 43 H 1.08001 * 120.03416 * 180.02562 * 24 5 4 44 44 H 1.07994 * 119.97579 * 179.97438 * 25 24 5 45 45 H 1.07999 * 119.94056 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.96787 * 0.27057 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.8816 -2.0947 -1.3017 6 8 1.3847 -2.8124 -0.2602 7 16 -0.0741 -3.2141 -0.4252 8 8 -0.4613 -3.6658 0.8652 9 8 -0.6859 -2.0764 -1.0174 10 6 -0.0328 -4.5973 -1.5980 11 1 0.5669 -4.3843 -2.4829 12 6 0.2910 -5.9505 -0.9433 13 6 -0.7677 -6.5652 -1.8739 14 1 -1.3857 -7.3228 -1.3919 15 8 -0.2442 -6.9931 -3.1329 16 6 -0.2616 -8.4099 -3.3184 17 6 0.3103 -8.7464 -4.6715 18 6 -0.5216 -8.8297 -5.7723 19 6 0.0038 -9.1336 -7.0143 20 6 1.3596 -9.3639 -7.1537 21 6 2.1908 -9.2861 -6.0518 22 6 1.6662 -8.9771 -4.8108 23 6 -1.4217 -5.1742 -1.9193 24 6 2.3396 -2.7455 -2.4384 25 6 2.8433 -2.0138 -3.4961 26 6 2.8919 -0.6336 -3.4225 27 6 2.4367 0.0171 -2.2910 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5614 2.4679 1.2085 32 1 1.3038 -6.3008 -1.1426 33 1 0.0254 -5.9995 0.1127 34 1 0.3382 -8.8854 -2.5423 35 1 -1.2880 -8.7717 -3.2573 36 1 -1.5816 -8.6540 -5.6626 37 1 -0.6457 -9.1947 -7.8750 38 1 1.7695 -9.6051 -8.1233 39 1 3.2500 -9.4666 -6.1607 40 1 2.3155 -8.9168 -3.9499 41 1 -2.1555 -5.0108 -1.1301 42 1 -1.7922 -4.8965 -2.9061 43 1 2.3016 -3.8233 -2.4965 44 1 3.2003 -2.5198 -4.3808 45 1 3.2865 -0.0632 -4.2504 46 1 2.4756 1.0950 -2.2360 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79477_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:13:06 Heat of formation + Delta-G solvation = -74.998370 kcal Electronic energy + Delta-G solvation = -32860.045559 eV Core-core repulsion = 28390.227974 eV Total energy + Delta-G solvation = -4469.817585 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.35280 -40.82432 -39.97508 -39.37649 -38.38911 -37.80129 -37.21567 -37.05569 -32.89355 -32.69665 -31.82557 -31.49198 -27.57711 -27.10308 -26.94207 -26.54798 -24.59474 -23.51552 -23.05900 -22.30642 -21.89236 -20.95892 -19.66700 -19.11090 -18.84806 -18.24158 -17.88373 -17.48645 -17.16677 -16.79149 -16.67055 -16.54331 -16.29263 -16.09524 -15.83012 -15.64308 -15.32428 -15.09577 -14.83587 -14.39435 -14.31835 -14.24999 -14.11023 -14.06906 -13.86261 -13.65328 -13.55171 -13.42896 -13.35160 -13.22649 -13.22390 -13.11377 -12.60496 -12.16194 -12.08140 -12.03725 -11.89963 -11.78600 -11.75163 -11.23838 -10.63380 -10.61450 -10.17083 -9.95623 -9.86034 -9.80349 -4.97683 -1.10571 0.00641 0.05484 0.29089 0.46338 1.00409 1.20001 1.52732 1.91519 2.36847 2.40889 2.52380 2.69002 2.93256 3.01958 3.24878 3.29887 3.40647 3.51011 3.60427 3.73761 3.84709 3.89515 3.93817 4.01071 4.11662 4.15655 4.18996 4.26574 4.27105 4.32017 4.35845 4.38147 4.42617 4.57764 4.63030 4.70525 4.72788 4.75220 4.76993 4.82088 4.93593 5.03226 5.04772 5.11925 5.19595 5.30259 5.51724 5.59108 5.61398 5.74021 6.05366 6.13344 6.48798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.123 4.123 3 Si 0.796 3.204 4 C -0.108 4.108 5 C 0.063 3.937 6 O -0.671 6.671 7 S 2.594 3.406 8 O -0.969 6.969 9 O -0.953 6.953 10 C -0.628 4.628 11 H 0.171 0.829 12 C -0.134 4.134 13 C 0.081 3.919 14 H 0.109 0.891 15 O -0.370 6.370 16 C 0.099 3.901 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.091 4.091 26 C -0.090 4.090 27 C -0.110 4.110 28 H 0.387 0.613 29 H 0.106 0.894 30 H -0.257 1.257 31 H -0.303 1.303 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.157 0.843 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 -2.400 -7.291 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.229 4.229 3 Si 0.698 3.302 4 C -0.111 4.111 5 C 0.022 3.978 6 O -0.631 6.631 7 S 2.693 3.307 8 O -0.967 6.967 9 O -0.951 6.951 10 C -0.738 4.738 11 H 0.189 0.811 12 C -0.173 4.173 13 C 0.021 3.979 14 H 0.127 0.873 15 O -0.289 6.289 16 C 0.023 3.977 17 C -0.107 4.107 18 C -0.130 4.130 19 C -0.152 4.152 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.164 4.164 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.128 4.128 28 H 0.237 0.763 29 H 0.124 0.876 30 H -0.182 1.182 31 H -0.231 1.231 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.174 0.826 44 H 0.188 0.812 45 H 0.189 0.811 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.910 -1.335 -6.214 8.031 hybrid contribution -1.328 -0.980 -0.173 1.659 sum 3.583 -2.315 -6.386 7.680 Atomic orbital electron populations 1.86631 1.17227 1.80758 1.49697 1.25696 0.84765 1.14429 0.98050 0.94024 0.89359 0.69557 0.77308 1.20537 1.00108 0.92298 0.98141 1.18213 1.04242 0.89959 0.85427 1.85647 1.52141 1.73111 1.52152 1.05484 0.73017 0.76414 0.75760 1.93564 1.80097 1.84022 1.39065 1.93587 1.75330 1.46627 1.79567 1.32221 1.09292 1.15064 1.17190 0.81123 1.23342 1.03473 0.90255 1.00187 1.22855 0.94414 0.95777 0.84814 0.87303 1.87937 1.83569 1.22562 1.34828 1.21546 1.01019 0.81227 0.93915 1.19782 0.94286 1.01671 0.95007 1.21316 1.00450 0.98749 0.92518 1.21458 0.96034 0.99839 0.97903 1.21540 0.93950 0.98914 0.99729 1.21466 1.00980 0.99932 0.92720 1.21314 0.94594 0.98540 0.98403 1.23015 0.91650 0.95353 1.05384 1.21785 1.00169 1.02220 0.92261 1.21558 0.96651 0.94440 0.98250 1.21809 0.96154 0.94881 0.98040 1.21438 0.97567 1.01460 0.92308 0.76325 0.87596 1.18240 1.23120 0.87561 0.87006 0.90838 0.90870 0.85069 0.84505 0.84405 0.84314 0.84844 0.87058 0.87633 0.82594 0.81219 0.81071 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -6.01 10.02 -126.93 -1.27 -7.28 16 2 C -0.12 -0.76 2.38 71.24 0.17 -0.59 16 3 Si 0.80 -0.14 30.28 68.60 2.08 1.94 16 4 C -0.11 -0.44 4.94 -19.77 -0.10 -0.54 16 5 C 0.06 0.34 4.63 22.51 0.10 0.44 16 6 O -0.67 -6.05 9.37 -61.47 -0.58 -6.63 16 7 S 2.59 23.78 5.14 -56.49 -0.29 23.49 16 8 O -0.97 -15.66 17.27 -118.57 -2.05 -17.71 16 9 O -0.95 -12.00 13.67 -115.17 -1.57 -13.57 16 10 C -0.63 -0.47 3.88 31.12 0.12 -0.35 16 11 H 0.17 -0.40 5.55 -2.38 -0.01 -0.41 16 12 C -0.13 0.18 7.47 31.12 0.23 0.41 16 13 C 0.08 -0.18 4.37 31.12 0.14 -0.05 16 14 H 0.11 -0.68 7.87 -2.38 -0.02 -0.70 16 15 O -0.37 -0.09 10.26 -148.98 -1.53 -1.62 16 16 C 0.10 -0.21 5.90 71.24 0.42 0.21 16 17 C -0.11 -0.08 5.51 -19.86 -0.11 -0.19 16 18 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 19 C -0.13 -0.02 10.05 22.27 0.22 0.21 16 20 C -0.12 0.04 10.05 22.27 0.22 0.26 16 21 C -0.13 0.05 10.05 22.27 0.22 0.28 16 22 C -0.11 -0.02 9.70 22.27 0.22 0.20 16 23 C -0.12 0.10 7.50 31.12 0.23 0.33 16 24 C -0.14 0.13 8.63 22.37 0.19 0.33 16 25 C -0.09 0.50 10.04 22.26 0.22 0.72 16 26 C -0.09 0.55 10.04 22.28 0.22 0.77 16 27 C -0.11 0.25 8.66 22.25 0.19 0.45 16 28 H 0.39 2.32 8.64 -74.06 -0.64 1.68 16 29 H 0.11 0.81 7.81 -2.39 -0.02 0.79 16 30 H -0.26 0.03 6.66 99.48 0.66 0.70 16 31 H -0.30 -2.39 7.11 99.48 0.71 -1.68 16 32 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.11 -0.09 7.43 -2.39 -0.02 -0.11 16 34 H 0.07 -0.35 8.09 -2.38 -0.02 -0.36 16 35 H 0.07 -0.33 8.08 -2.39 -0.02 -0.35 16 36 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 37 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 38 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 39 H 0.14 -0.58 8.06 -2.91 -0.02 -0.61 16 40 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 41 H 0.11 -0.28 8.10 -2.39 -0.02 -0.30 16 42 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.16 -0.79 6.43 -2.91 -0.02 -0.80 16 44 H 0.17 -1.93 8.06 -2.91 -0.02 -1.96 16 45 H 0.17 -2.15 8.06 -2.91 -0.02 -2.17 16 46 H 0.16 -1.02 4.87 -2.91 -0.01 -1.03 16 Total: 0.00 -26.39 388.84 -1.70 -28.09 By element: Atomic # 1 Polarization: -10.09 SS G_CDS: 0.37 Total: -9.72 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 3.15 Total: 3.02 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -7.00 Total: -46.81 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: 2.08 Total: 1.94 kcal Atomic # 16 Polarization: 23.78 SS G_CDS: -0.29 Total: 23.49 kcal Total: -26.39 -1.70 -28.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.913 kcal (2) G-P(sol) polarization free energy of solvation -26.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds