Wall clock time and date at job start Mon Mar 8 2021 11:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86307 * 109.46792 * 2 1 4 4 H 1.48508 * 109.46552 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47069 * 299.99925 * 3 2 1 6 6 H 1.48500 * 109.47013 * 60.00299 * 3 2 1 7 7 C 1.50703 * 109.47319 * 119.99819 * 2 1 3 8 8 C 1.38115 * 120.02782 * 255.16170 * 7 2 1 9 9 C 1.38292 * 120.05546 * 180.02562 * 8 7 2 10 10 C 1.38241 * 120.10846 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05831 * 359.97438 * 10 9 8 12 12 C 1.38709 * 119.94271 * 359.75074 * 11 10 9 13 13 O 1.35902 * 120.05734 * 180.02562 * 12 11 10 14 14 S 1.52196 * 113.99827 * 275.51291 * 13 12 11 15 15 O 1.42100 * 106.40175 * 188.57508 * 14 13 12 16 16 O 1.42100 * 106.40545 * 321.49771 * 14 13 12 17 17 C 1.76203 * 107.21813 * 75.03660 * 14 13 12 18 18 C 1.38232 * 119.99961 * 262.99073 * 17 14 13 19 19 C 1.38239 * 120.00377 * 180.02562 * 18 17 14 20 20 C 1.38242 * 119.99361 * 359.97378 * 19 18 17 21 Xx 1.81002 * 119.99718 * 179.97438 * 20 19 18 22 21 F 9.79098 * 133.43218 * 252.10559 * 7 1 2 23 22 F 1.60997 * 89.99812 * 134.99824 * 21 20 19 24 23 F 1.61000 * 89.99860 * 315.00196 * 21 20 19 25 24 F 1.60996 * 89.99767 * 225.00059 * 21 20 19 26 25 F 1.61006 * 89.99905 * 44.99975 * 21 20 19 27 26 C 1.38236 * 120.00234 * 359.95891 * 20 19 18 28 27 C 1.38230 * 119.99952 * 359.85847 * 27 20 19 29 28 H 0.96702 * 114.00485 * 55.09053 * 1 2 3 30 29 H 1.09002 * 109.47488 * 240.00404 * 2 1 3 31 30 H 1.08002 * 119.97404 * 0.02562 * 8 7 2 32 31 H 1.08001 * 119.94737 * 179.97438 * 9 8 7 33 32 H 1.08001 * 119.97075 * 179.97438 * 10 9 8 34 33 H 1.08002 * 120.02760 * 179.97438 * 11 10 9 35 34 H 1.08005 * 120.00015 * 359.97438 * 18 17 14 36 35 H 1.07990 * 120.00446 * 179.97438 * 19 18 17 37 36 H 1.07993 * 119.99836 * 180.02562 * 27 20 19 38 37 H 1.07998 * 119.99898 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 1 3.5349 1.7565 0.0006 5 1 1.5548 2.4565 -1.2125 6 1 1.5549 2.4565 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.4504 0.0159 2.2843 9 6 2.9121 -0.6354 3.4135 10 6 2.8548 -2.0144 3.4908 11 6 2.3355 -2.7455 2.4397 12 6 1.8665 -2.0942 1.3084 13 8 1.3547 -2.8109 0.2734 14 16 2.4042 -3.3301 -0.6989 15 8 1.6943 -3.8700 -1.8051 16 8 3.3766 -2.3018 -0.8265 17 6 3.2138 -4.6861 0.0826 18 6 4.4157 -4.4898 0.7365 19 6 5.0511 -5.5537 1.3492 20 6 4.4842 -6.8138 1.3082 21 9 6.0588 -9.4443 2.8262 22 9 3.9146 -8.6785 2.7458 23 9 6.7184 -7.7354 1.4738 24 9 5.0358 -9.1202 0.8139 25 9 5.5972 -7.2937 3.4057 26 6 3.2816 -7.0098 0.6554 27 6 2.6443 -5.9452 0.0461 28 1 -0.3934 0.5055 -0.7244 29 1 1.7923 -0.5138 -0.8900 30 1 2.4959 1.0934 2.2265 31 1 3.3181 -0.0657 4.2364 32 1 3.2164 -2.5208 4.3736 33 1 2.2913 -3.8229 2.5005 34 1 4.8588 -3.5053 0.7681 35 1 5.9903 -5.4004 1.8597 36 1 2.8385 -7.9942 0.6239 37 1 1.7050 -6.0985 -0.4642 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79477_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:19:43 Heat of formation + Delta-G solvation = 307.455917 kcal Electronic energy + Delta-G solvation = -35129.479126 eV Core-core repulsion = 29329.756238 eV Total energy + Delta-G solvation = -5799.722888 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 388.041 amu Computer time = 13.53 seconds Orbital eigenvalues (eV) -44.46815 -44.32289 -44.26832 -44.17387 -43.65577 -42.48424 -41.33374 -39.42311 -38.77984 -37.71778 -37.43110 -33.32838 -33.22529 -32.82450 -31.52453 -27.01968 -25.01722 -24.87394 -24.46367 -23.02958 -21.73129 -20.48326 -19.37753 -18.96074 -18.47303 -17.74504 -17.60575 -17.18275 -16.65710 -16.51466 -16.25937 -15.98905 -15.62477 -15.55664 -15.31191 -15.20940 -15.19975 -14.83392 -14.61753 -14.60415 -14.52550 -14.40376 -14.27344 -14.24318 -14.18192 -14.09102 -13.98779 -13.79049 -13.69113 -13.63255 -13.58361 -13.46035 -13.26152 -13.15868 -12.84884 -12.74815 -12.39827 -12.14401 -12.04372 -11.89550 -11.77359 -11.57944 -11.47175 -11.12375 -10.45458 -10.17345 -10.00216 -5.34323 -4.87742 -3.48714 -1.60354 -1.25786 -0.79728 -0.03086 0.04918 0.90356 1.05966 1.35775 1.44114 1.52336 1.87656 2.13258 2.35534 2.36076 2.56439 2.65506 3.11507 3.19864 3.27714 3.55759 3.65424 3.71658 3.80081 3.82829 3.94071 4.01464 4.13990 4.15849 4.24893 4.28397 4.32713 4.57890 4.73094 4.86968 4.99923 5.20592 5.31794 5.71124 6.68673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.113 4.113 3 Si 0.974 3.026 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.243 1.243 7 C -0.069 4.069 8 C -0.119 4.119 9 C -0.083 4.083 10 C -0.090 4.090 11 C -0.130 4.130 12 C 0.056 3.944 13 O -0.643 6.643 14 S 2.687 3.313 15 O -0.936 6.936 16 O -0.943 6.943 17 C -0.698 4.698 18 C 0.059 3.941 19 C -0.120 4.120 20 C 0.388 3.612 21 F -0.203 7.203 22 F -0.161 7.161 23 F -0.159 7.159 24 F -0.164 7.164 25 F -0.153 7.153 26 C -0.126 4.126 27 C 0.061 3.939 28 H 0.398 0.602 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.225 0.775 35 H 0.207 0.793 36 H 0.203 0.797 37 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 11.184 0.091 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.222 4.222 3 Si 0.794 3.206 4 H -0.167 1.167 5 H -0.177 1.177 6 H -0.166 1.166 7 C -0.072 4.072 8 C -0.137 4.137 9 C -0.101 4.101 10 C -0.108 4.108 11 C -0.150 4.150 12 C 0.014 3.986 13 O -0.603 6.603 14 S 2.777 3.223 15 O -0.934 6.934 16 O -0.942 6.942 17 C -0.779 4.779 18 C 0.041 3.959 19 C -0.138 4.138 20 C 0.382 3.618 21 F -0.203 7.203 22 F -0.160 7.160 23 F -0.158 7.158 24 F -0.163 7.163 25 F -0.152 7.152 26 C -0.144 4.144 27 C 0.043 3.957 28 H 0.249 0.751 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.242 0.758 35 H 0.224 0.776 36 H 0.220 0.780 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.338 12.046 0.060 12.500 hybrid contribution 0.522 -2.327 0.116 2.388 sum -2.816 9.719 0.176 10.120 Atomic orbital electron populations 1.86481 1.16589 1.77542 1.55758 1.25058 0.86459 1.13155 0.97506 0.85347 0.80948 0.72825 0.81480 1.16669 1.17670 1.16611 1.19636 0.98744 0.92152 0.96628 1.21388 0.98201 1.01278 0.92806 1.21813 0.95543 0.95270 0.97505 1.21574 0.96722 0.94004 0.98453 1.21759 0.98797 1.02651 0.91806 1.18123 1.03537 0.89575 0.87327 1.85754 1.56431 1.70966 1.47117 1.02591 0.72694 0.73542 0.73500 1.93680 1.72024 1.79995 1.47709 1.93659 1.62376 1.53271 1.84897 1.31917 1.10327 1.18219 1.17477 1.21701 0.89435 0.98239 0.86523 1.22203 1.05431 0.84111 1.02075 1.28050 0.85212 0.58508 0.90000 2.00000 1.60349 1.65317 1.94668 1.99921 1.31444 1.87453 1.97137 1.99920 1.57262 1.58910 1.99684 1.99921 1.63401 1.80305 1.72670 1.99919 1.82453 1.46718 1.86067 1.22191 0.90723 1.05015 0.96431 1.21605 0.99073 0.85193 0.89820 0.75103 0.91068 0.83485 0.81363 0.80891 0.81850 0.75822 0.77588 0.78019 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 262. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.68 12.92 -148.98 -1.93 -1.24 16 2 C -0.11 0.21 2.34 71.24 0.17 0.38 16 3 Si 0.97 -4.50 25.42 68.60 1.74 -2.76 16 4 H -0.24 0.97 7.11 99.48 0.71 1.68 16 5 H -0.25 1.04 7.11 99.48 0.71 1.74 16 6 H -0.24 1.19 6.73 99.48 0.67 1.86 16 7 C -0.07 0.16 4.86 -19.77 -0.10 0.06 16 8 C -0.12 0.76 8.66 22.25 0.19 0.95 16 9 C -0.08 0.93 10.04 22.28 0.22 1.15 16 10 C -0.09 1.14 10.04 22.25 0.22 1.37 16 11 C -0.13 1.34 8.46 22.36 0.19 1.53 16 12 C 0.06 -0.23 4.71 22.51 0.11 -0.12 16 13 O -0.64 2.19 9.52 -61.73 -0.59 1.60 16 14 S 2.69 -13.19 5.16 -56.49 -0.29 -13.48 16 15 O -0.94 -0.90 17.48 -118.78 -2.08 -2.98 16 16 O -0.94 2.75 14.40 -118.78 -1.71 1.04 16 17 C -0.70 8.10 4.74 22.27 0.11 8.20 16 18 C 0.06 -0.84 8.56 22.27 0.19 -0.65 16 19 C -0.12 1.31 8.62 22.27 0.19 1.50 16 20 C 0.39 -1.59 4.82 22.27 0.11 -1.48 16 21 F -0.20 -4.61 16.67 44.97 0.75 -3.86 16 22 F -0.16 -1.83 15.31 44.97 0.69 -1.14 16 23 F -0.16 -1.88 15.31 44.97 0.69 -1.19 16 24 F -0.16 -2.07 15.32 44.97 0.69 -1.38 16 25 F -0.15 -1.56 15.30 44.97 0.69 -0.87 16 26 C -0.13 1.21 8.62 22.27 0.19 1.40 16 27 C 0.06 -0.81 9.52 22.27 0.21 -0.60 16 28 H 0.40 -3.89 8.62 -74.06 -0.64 -4.53 16 29 H 0.07 -0.16 6.27 -2.39 -0.01 -0.18 16 30 H 0.15 -1.27 4.89 -2.91 -0.01 -1.28 16 31 H 0.17 -2.78 8.06 -2.91 -0.02 -2.81 16 32 H 0.17 -3.15 8.06 -2.91 -0.02 -3.18 16 33 H 0.16 -2.60 7.39 -2.91 -0.02 -2.62 16 34 H 0.23 -4.44 7.48 -2.91 -0.02 -4.46 16 35 H 0.21 -2.71 7.40 -2.92 -0.02 -2.73 16 36 H 0.20 -2.22 7.40 -2.91 -0.02 -2.24 16 37 H 0.22 -4.08 7.79 -2.91 -0.02 -4.10 16 Total: 0.00 -37.36 351.12 1.92 -35.44 By element: Atomic # 1 Polarization: -24.12 SS G_CDS: 1.26 Total: -22.86 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 2.01 Total: 13.69 kcal Atomic # 8 Polarization: 4.72 SS G_CDS: -6.30 Total: -1.58 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 3.50 Total: -8.45 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 1.74 Total: -2.76 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -0.29 Total: -13.48 kcal Total: -37.36 1.92 -35.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79477_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 342.893 kcal (2) G-P(sol) polarization free energy of solvation -37.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 305.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 307.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.53 seconds