Wall clock time and date at job start Mon Mar 8 2021 11:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00188 * 2 1 4 4 O 1.20821 * 119.99858 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99733 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.85290 * 311.19431 * 5 3 2 7 7 C 1.53783 * 113.61481 * 82.50507 * 5 3 2 8 8 C 1.53779 * 87.08339 * 139.97808 * 7 5 3 9 9 H 1.09005 * 113.68881 * 89.12428 * 8 7 5 10 10 S 1.81393 * 113.61273 * 220.01865 * 8 7 5 11 11 O 1.42105 * 110.54320 * 170.87222 * 10 8 7 12 12 O 1.42102 * 110.54610 * 34.12060 * 10 8 7 13 13 O 1.52201 * 104.44726 * 282.49556 * 10 8 7 14 14 C 1.35883 * 114.00168 * 76.34618 * 13 10 8 15 15 C 1.39813 * 119.56585 * 267.77204 * 14 13 10 16 16 C 1.36013 * 120.92761 * 180.27598 * 15 14 13 17 17 C 1.40556 * 119.73726 * 359.75155 * 16 15 14 18 18 C 1.40533 * 121.22580 * 179.97438 * 17 16 15 19 19 C 1.36091 * 119.66934 * 180.02562 * 18 17 16 20 20 C 1.39381 * 121.00191 * 0.02562 * 19 18 17 21 21 C 1.36084 * 120.98399 * 0.02562 * 20 19 18 22 22 C 1.40583 * 119.65538 * 359.97438 * 21 20 19 23 23 C 1.36601 * 119.56684 * 87.53855 * 14 13 10 24 24 C 1.50696 * 120.19483 * 0.02562 * 23 14 13 25 25 O 1.42907 * 109.47279 * 232.54864 * 24 23 14 26 26 Si 1.86295 * 109.47720 * 112.54104 * 24 23 14 27 27 C 1.53775 * 113.61102 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.47791 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47275 * 300.00569 * 1 2 3 30 30 H 1.09002 * 109.46912 * 60.00355 * 1 2 3 31 31 H 1.09000 * 113.61361 * 25.42304 * 7 5 3 32 32 H 1.09001 * 113.61051 * 254.53202 * 7 5 3 33 33 H 1.07997 * 119.53399 * 0.03017 * 15 14 13 34 34 H 1.08005 * 120.13107 * 179.77047 * 16 15 14 35 35 H 1.08000 * 120.16234 * 0.05595 * 18 17 16 36 36 H 1.08002 * 119.50027 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.50522 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.16866 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46670 * 352.54069 * 24 23 14 40 40 H 0.96693 * 113.99771 * 54.87292 * 25 24 23 41 41 H 1.48501 * 110.00297 * 305.47547 * 26 24 23 42 42 H 1.48502 * 109.99716 * 66.79047 * 26 24 23 43 43 H 1.09004 * 113.61570 * 105.47137 * 27 5 3 44 44 H 1.09001 * 113.61633 * 334.56932 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 4.0234 0.6364 0.7567 7 6 4.1918 1.1231 -1.3962 8 6 5.1816 2.2264 -0.9866 9 1 6.0818 1.8491 -0.5013 10 16 5.5400 3.4101 -2.3136 11 8 6.2870 4.5101 -1.8122 12 8 4.3907 3.6136 -3.1242 13 8 6.5157 2.6771 -3.2230 14 6 5.9341 1.7399 -4.0167 15 6 5.8550 0.4154 -3.5759 16 6 5.2837 -0.5460 -4.3500 17 6 4.7596 -0.2069 -5.6093 18 6 4.1631 -1.1751 -6.4349 19 6 3.6663 -0.8118 -7.6487 20 6 3.7398 0.5088 -8.0885 21 6 4.3111 1.4733 -7.3170 22 6 4.8354 1.1362 -6.0569 23 6 5.4302 2.1052 -5.2326 24 6 5.5194 3.5380 -5.6907 25 8 4.2228 3.9952 -6.0806 26 14 6.6816 3.6550 -7.1419 27 6 4.1078 2.7140 -0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.5244 1.4142 -2.2073 32 1 4.6621 0.1537 -1.5610 33 1 6.2566 0.1513 -2.6088 34 1 5.2327 -1.5659 -3.9983 35 1 4.0989 -2.2023 -6.1076 36 1 3.2080 -1.5581 -8.2808 37 1 3.3381 0.7702 -9.0563 38 1 4.3607 2.4925 -7.6706 39 1 5.8929 4.1575 -4.8752 40 1 3.5467 3.8895 -5.3975 41 1 7.9962 3.0611 -6.7891 42 1 6.1036 2.9493 -8.3137 43 1 4.5105 3.0296 0.9624 44 1 3.4176 3.4400 -0.4298 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79478_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:00:14 Heat of formation + Delta-G solvation = -126.954248 kcal Electronic energy + Delta-G solvation = -34793.408907 eV Core-core repulsion = 30158.193773 eV Total energy + Delta-G solvation = -4635.215134 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.095 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.81165 -41.96315 -40.82778 -39.74289 -38.40450 -37.87990 -37.41431 -37.30246 -36.93506 -33.94001 -31.38833 -30.76982 -29.97991 -27.88098 -27.39335 -27.07404 -24.88240 -24.48263 -23.47366 -22.30632 -21.90988 -20.95635 -20.10199 -19.52139 -18.96781 -18.82574 -18.50682 -18.08175 -17.54738 -17.48999 -17.14169 -17.04160 -16.58180 -16.33642 -15.90605 -15.78572 -15.52756 -14.87580 -14.82348 -14.65240 -14.56991 -14.33108 -14.20129 -14.10493 -13.97243 -13.93821 -13.85835 -13.58470 -13.41162 -13.29247 -13.21824 -13.17406 -12.84236 -12.60864 -12.49393 -12.38560 -12.05038 -11.91507 -11.87516 -11.76414 -11.46986 -11.34666 -11.19272 -10.75661 -9.83976 -9.08137 -4.90633 -1.27252 -0.71206 -0.32222 0.74584 0.86852 1.03113 1.29218 1.56133 1.58548 1.71720 1.91481 2.24022 2.47846 2.71809 2.81543 2.98661 3.07308 3.15047 3.31898 3.42269 3.51034 3.56340 3.69242 3.76007 3.83758 3.90160 3.95241 4.09259 4.11204 4.14167 4.15468 4.17794 4.21030 4.22974 4.30494 4.34177 4.42996 4.53376 4.54323 4.67861 4.72008 4.75053 4.84082 4.95788 5.04764 5.27106 5.35654 5.42266 5.47661 5.77528 6.60528 6.65884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.138 0.862 7 C -0.098 4.098 8 C -0.648 4.648 9 H 0.166 0.834 10 S 2.596 3.404 11 O -0.918 6.918 12 O -0.944 6.944 13 O -0.658 6.658 14 C 0.068 3.932 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.043 4.043 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.036 4.036 23 C -0.065 4.065 24 C -0.080 4.080 25 O -0.528 6.528 26 Si 0.751 3.249 27 C -0.088 4.088 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.064 0.936 40 H 0.381 0.619 41 H -0.249 1.249 42 H -0.235 1.235 43 H 0.105 0.895 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -6.400 -0.099 6.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.156 0.844 7 C -0.136 4.136 8 C -0.755 4.755 9 H 0.184 0.816 10 S 2.691 3.309 11 O -0.916 6.916 12 O -0.942 6.942 13 O -0.617 6.617 14 C 0.026 3.974 15 C -0.151 4.151 16 C -0.096 4.096 17 C -0.043 4.043 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.037 4.037 23 C -0.068 4.068 24 C -0.187 4.187 25 O -0.335 6.335 26 Si 0.646 3.354 27 C -0.126 4.126 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.231 0.769 41 H -0.173 1.173 42 H -0.159 1.159 43 H 0.124 0.876 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.196 -5.745 -1.548 5.953 hybrid contribution -0.866 -1.313 2.187 2.694 sum -0.670 -7.058 0.639 7.118 Atomic orbital electron populations 1.23357 0.75665 1.04123 1.02908 1.86499 1.23935 1.33026 1.83779 1.23442 0.91474 0.81677 0.72513 1.90713 1.66809 1.36366 1.44512 1.22432 0.87951 1.00125 1.00980 0.84440 1.22904 0.95608 0.98625 0.96443 1.32223 1.08133 1.16172 1.18954 0.81581 1.05599 0.73788 0.75662 0.75860 1.93672 1.69770 1.47514 1.80674 1.93601 1.53045 1.84449 1.63143 1.85740 1.58320 1.58028 1.59616 1.17415 1.02085 0.86785 0.91071 1.20926 1.01489 0.90667 1.02036 1.20972 0.96346 0.99628 0.92675 1.18203 0.98483 0.92774 0.94876 1.21057 0.98407 0.98969 0.94383 1.21062 0.97990 0.96534 0.96137 1.21027 0.98708 0.92892 1.00312 1.21509 0.96329 1.01288 0.92483 1.17686 0.99344 0.91809 0.94832 1.20360 0.96326 0.97694 0.92435 1.25300 0.93690 0.89216 1.10534 1.86580 1.17525 1.85046 1.44379 0.93642 0.75707 0.89973 0.76033 1.22631 0.93984 0.95990 1.00007 0.87732 0.91609 0.91585 0.87224 0.87458 0.83735 0.83545 0.84741 0.85203 0.85140 0.83279 0.91794 0.76934 1.17280 1.15914 0.87602 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.21 10.57 -39.26 -0.41 -0.62 16 3 C 0.47 0.58 7.48 36.01 0.27 0.85 16 4 O -0.50 -2.17 15.65 -18.75 -0.29 -2.47 16 5 C -0.10 0.18 4.26 -90.96 -0.39 -0.21 16 6 H 0.14 -0.62 8.14 -51.93 -0.42 -1.04 16 7 C -0.10 0.24 4.95 -25.92 -0.13 0.12 16 8 C -0.65 1.32 4.08 -25.94 -0.11 1.21 16 9 H 0.17 -0.83 8.14 -51.93 -0.42 -1.25 16 10 S 2.60 4.98 4.62 -107.50 -0.50 4.49 16 11 O -0.92 -4.96 18.09 -67.04 -1.21 -6.17 16 12 O -0.94 -2.85 12.93 -67.11 -0.87 -3.71 16 13 O -0.66 -1.39 9.05 -51.70 -0.47 -1.86 16 14 C 0.07 0.12 4.61 -39.58 -0.18 -0.06 16 15 C -0.13 0.15 6.74 -39.79 -0.27 -0.12 16 16 C -0.08 0.12 9.76 -39.51 -0.39 -0.26 16 17 C -0.04 -0.02 5.74 -106.81 -0.61 -0.64 16 18 C -0.11 0.09 9.77 -39.49 -0.39 -0.29 16 19 C -0.10 0.07 9.95 -39.93 -0.40 -0.32 16 20 C -0.11 -0.04 9.95 -39.93 -0.40 -0.43 16 21 C -0.10 -0.19 7.57 -39.47 -0.30 -0.49 16 22 C -0.04 -0.08 5.43 -106.84 -0.58 -0.66 16 23 C -0.06 -0.18 3.70 -104.39 -0.39 -0.57 16 24 C -0.08 -0.23 1.66 36.00 0.06 -0.17 16 25 O -0.53 -1.37 10.76 -35.23 -0.38 -1.75 16 26 Si 0.75 0.97 31.01 -169.99 -5.27 -4.30 16 27 C -0.09 0.11 6.99 -25.94 -0.18 -0.07 16 28 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 29 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 30 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 31 H 0.11 -0.14 7.48 -51.93 -0.39 -0.53 16 32 H 0.11 -0.54 6.11 -51.93 -0.32 -0.86 16 33 H 0.15 -0.63 6.81 -52.49 -0.36 -0.99 16 34 H 0.15 -0.69 8.06 -52.48 -0.42 -1.11 16 35 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 36 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 37 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 38 H 0.15 0.28 4.22 -52.49 -0.22 0.06 16 39 H 0.06 0.19 5.72 -51.93 -0.30 -0.10 16 40 H 0.38 0.77 7.94 45.56 0.36 1.14 16 41 H -0.25 -0.79 7.11 56.52 0.40 -0.39 16 42 H -0.24 -0.44 5.92 56.52 0.33 -0.11 16 43 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 44 H 0.11 0.01 7.39 -51.93 -0.38 -0.38 16 LS Contribution 365.63 15.07 5.51 5.51 Total: 0.00 -10.03 365.63 -12.29 -22.32 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: -5.10 Total: -10.36 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.30 Total: -1.07 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -3.64 Total: -16.59 kcal Atomic # 14 Polarization: 0.97 SS G_CDS: -5.27 Total: -4.30 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -0.50 Total: 4.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -10.03 -12.29 -22.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79478_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.634 kcal (2) G-P(sol) polarization free energy of solvation -10.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds