Wall clock time and date at job start Mon Mar 8 2021 14:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99882 * 2 1 4 4 O 1.20823 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.85558 * 311.19714 * 5 3 2 7 7 C 1.53778 * 113.61189 * 82.50551 * 5 3 2 8 8 C 1.53780 * 87.08364 * 139.98150 * 7 5 3 9 9 H 1.08994 * 113.69329 * 89.12879 * 8 7 5 10 10 S 1.81404 * 113.61471 * 220.01873 * 8 7 5 11 11 O 1.42098 * 110.54139 * 170.86724 * 10 8 7 12 12 O 1.42104 * 110.54050 * 34.12316 * 10 8 7 13 13 O 1.52201 * 104.45087 * 282.49708 * 10 8 7 14 14 C 1.35991 * 113.99917 * 74.99902 * 13 10 8 15 15 C 1.39151 * 120.07378 * 90.00307 * 14 13 10 16 16 O 1.35987 * 120.07278 * 0.04177 * 15 14 13 17 17 C 1.42904 * 117.00113 * 179.97438 * 16 15 14 18 18 C 1.38566 * 119.85393 * 180.02562 * 15 14 13 19 19 C 1.38241 * 120.00158 * 359.97438 * 18 15 14 20 20 C 1.50699 * 119.92870 * 179.97438 * 19 18 15 21 21 O 1.42901 * 109.46830 * 300.00129 * 20 19 18 22 22 Si 1.86298 * 109.46950 * 180.02562 * 20 19 18 23 23 C 1.38255 * 120.14388 * 0.27945 * 19 18 15 24 24 C 1.38245 * 120.14566 * 359.44082 * 23 19 18 25 25 C 1.53780 * 113.61371 * 179.97438 * 5 3 2 26 26 H 1.09005 * 109.46633 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46771 * 299.99715 * 1 2 3 28 28 H 1.08994 * 109.47024 * 60.00020 * 1 2 3 29 29 H 1.09004 * 113.61903 * 25.42778 * 7 5 3 30 30 H 1.09001 * 113.61706 * 254.52916 * 7 5 3 31 31 H 1.08997 * 109.46753 * 299.99593 * 17 16 15 32 32 H 1.08999 * 109.47187 * 59.99607 * 17 16 15 33 33 H 1.09004 * 109.46971 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.99892 * 179.97438 * 18 15 14 35 35 H 1.08991 * 109.47351 * 60.00277 * 20 19 18 36 36 H 0.96708 * 114.00246 * 299.99864 * 21 20 19 37 37 H 1.48506 * 109.99834 * 180.02562 * 22 20 19 38 38 H 1.48502 * 110.00011 * 301.31529 * 22 20 19 39 39 H 1.08004 * 119.92680 * 179.70612 * 23 19 18 40 40 H 1.07998 * 119.99964 * 180.25397 * 24 23 19 41 41 H 1.08999 * 113.61244 * 105.47512 * 25 5 3 42 42 H 1.08998 * 113.69353 * 334.58182 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0234 0.6366 0.7566 7 6 4.1916 1.1233 -1.3961 8 6 5.1814 2.2266 -0.9866 9 1 6.0816 1.8495 -0.5015 10 16 5.5398 3.4105 -2.3136 11 8 6.2867 4.5104 -1.8122 12 8 4.3904 3.6140 -3.1241 13 8 6.5155 2.6775 -3.2232 14 6 5.9378 1.7197 -3.9966 15 6 5.4479 2.0439 -5.2581 16 8 5.5465 3.3189 -5.7204 17 6 5.0226 3.5786 -7.0244 18 6 4.8596 1.0645 -6.0422 19 6 4.7609 -0.2314 -5.5710 20 6 4.1202 -1.2951 -6.4249 21 8 2.7694 -0.9268 -6.7108 22 14 4.1407 -2.9194 -5.5127 23 6 5.2429 -0.5523 -4.3156 24 6 5.8362 0.4188 -3.5306 25 6 4.1077 2.7142 -0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.5242 1.4144 -2.2073 30 1 4.6620 0.1540 -1.5611 31 1 5.5444 2.9609 -7.7552 32 1 3.9587 3.3420 -7.0422 33 1 5.1646 4.6310 -7.2700 34 1 4.4782 1.3136 -7.0214 35 1 4.6748 -1.3950 -7.3578 36 1 2.2160 -0.8201 -5.9249 37 1 3.5122 -3.9770 -6.3445 38 1 5.5378 -3.2981 -5.1811 39 1 5.1597 -1.5648 -3.9491 40 1 6.2156 0.1646 -2.5519 41 1 4.5105 3.0297 0.9624 42 1 3.4184 3.4413 -0.4293 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79479_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:38:20 Heat of formation + Delta-G solvation = -179.028061 kcal Electronic energy + Delta-G solvation = -32172.454216 eV Core-core repulsion = 27600.977221 eV Total energy + Delta-G solvation = -4571.476994 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -42.54550 -41.89949 -40.29746 -39.69878 -39.22684 -38.15316 -37.40091 -37.30381 -37.03844 -32.41505 -31.68106 -29.93279 -28.73150 -27.79965 -27.32129 -26.96254 -23.99523 -23.53349 -23.28270 -21.73315 -20.87425 -19.95404 -19.29190 -19.02406 -18.54543 -18.46591 -18.13070 -17.60042 -17.54210 -17.04343 -16.83261 -16.73362 -16.31503 -16.27727 -15.89812 -15.54881 -15.37342 -14.84009 -14.66082 -14.48799 -14.22158 -14.18425 -14.06782 -13.84917 -13.67349 -13.51820 -13.32071 -13.12510 -13.10180 -13.03516 -12.88802 -12.77431 -12.75206 -12.33795 -12.27018 -12.02124 -11.90231 -11.83189 -11.64047 -11.26993 -10.70760 -10.20923 -9.52303 -5.20416 -1.07006 -0.22632 -0.00624 1.00822 1.08074 1.09992 1.47071 1.61565 1.82238 1.98304 2.14530 2.36001 2.66536 2.84224 3.04534 3.14250 3.23963 3.28059 3.40836 3.48510 3.58426 3.77307 3.80551 3.86867 4.01167 4.07388 4.13328 4.16045 4.19727 4.20956 4.21435 4.24253 4.27684 4.37738 4.49961 4.51181 4.57246 4.61156 4.69867 4.77734 4.88402 5.02261 5.27885 5.31510 6.06485 6.36735 6.65617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.138 0.862 7 C -0.101 4.101 8 C -0.654 4.654 9 H 0.166 0.834 10 S 2.597 3.403 11 O -0.922 6.922 12 O -0.935 6.935 13 O -0.648 6.648 14 C 0.031 3.969 15 C 0.167 3.833 16 O -0.298 6.298 17 C 0.022 3.978 18 C -0.172 4.172 19 C -0.058 4.058 20 C -0.075 4.075 21 O -0.536 6.536 22 Si 0.692 3.308 23 C -0.145 4.145 24 C -0.082 4.082 25 C -0.088 4.088 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.382 0.618 37 H -0.252 1.252 38 H -0.253 1.253 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.104 0.896 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -7.139 1.079 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.156 0.844 7 C -0.139 4.139 8 C -0.760 4.760 9 H 0.184 0.816 10 S 2.691 3.309 11 O -0.920 6.920 12 O -0.933 6.933 13 O -0.607 6.607 14 C -0.011 4.011 15 C 0.117 3.883 16 O -0.209 6.209 17 C -0.073 4.073 18 C -0.190 4.190 19 C -0.059 4.059 20 C -0.185 4.185 21 O -0.341 6.341 22 Si 0.594 3.406 23 C -0.163 4.163 24 C -0.101 4.101 25 C -0.126 4.126 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.229 0.771 37 H -0.176 1.176 38 H -0.178 1.178 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.123 0.877 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.084 -6.845 0.182 6.933 hybrid contribution 0.139 0.149 0.029 0.206 sum -0.946 -6.696 0.211 6.766 Atomic orbital electron populations 1.23354 0.75741 1.04102 1.02875 1.86500 1.23854 1.32996 1.83812 1.23467 0.91499 0.81666 0.72504 1.90717 1.66828 1.36410 1.44493 1.22437 0.87862 1.00132 1.01002 0.84427 1.22970 0.95761 0.98657 0.96499 1.32303 1.08029 1.16373 1.19291 0.81615 1.05652 0.73934 0.75600 0.75715 1.93650 1.69997 1.47575 1.80807 1.93662 1.52814 1.84242 1.62628 1.85751 1.58232 1.56513 1.60170 1.17267 1.06295 0.87124 0.90451 1.19068 0.92663 0.85047 0.91493 1.86196 1.75990 1.23890 1.34870 1.23275 0.99273 1.03686 0.81022 1.21097 1.03934 0.92278 1.01737 1.20396 0.96181 0.94937 0.94430 1.25198 0.85047 1.04569 1.03694 1.86534 1.18980 1.92282 1.36338 0.94696 0.84155 0.75273 0.86519 1.20790 1.01981 0.99461 0.94060 1.21193 0.97798 0.89777 1.01370 1.22612 0.94070 0.95961 0.99993 0.87704 0.91734 0.91571 0.87118 0.87266 0.92056 0.91600 0.87316 0.83352 0.86231 0.77061 1.17648 1.17786 0.83759 0.82770 0.87725 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 101.05 1.07 1.00 16 2 O -0.36 0.19 10.57 -39.26 -0.41 -0.23 16 3 C 0.47 0.22 7.48 36.00 0.27 0.49 16 4 O -0.50 -1.93 15.65 -18.75 -0.29 -2.22 16 5 C -0.09 0.24 4.26 -90.96 -0.39 -0.14 16 6 H 0.14 -0.72 8.14 -51.93 -0.42 -1.15 16 7 C -0.10 0.34 4.86 -25.92 -0.13 0.21 16 8 C -0.65 1.48 3.97 -25.94 -0.10 1.38 16 9 H 0.17 -0.90 8.14 -51.93 -0.42 -1.32 16 10 S 2.60 6.91 5.15 -107.50 -0.55 6.36 16 11 O -0.92 -5.95 18.09 -67.04 -1.21 -7.16 16 12 O -0.94 -4.36 15.13 -68.53 -1.04 -5.40 16 13 O -0.65 -1.72 9.84 -54.21 -0.53 -2.26 16 14 C 0.03 0.04 4.64 -39.12 -0.18 -0.14 16 15 C 0.17 0.35 5.93 -39.12 -0.23 0.12 16 16 O -0.30 -1.00 9.73 -41.46 -0.40 -1.40 16 17 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 18 C -0.17 0.04 8.60 -39.46 -0.34 -0.30 16 19 C -0.06 0.11 5.39 -104.61 -0.56 -0.46 16 20 C -0.07 0.19 2.82 36.01 0.10 0.29 16 21 O -0.54 1.01 12.76 -35.23 -0.45 0.56 16 22 Si 0.69 -2.34 29.78 -169.99 -5.06 -7.41 16 23 C -0.15 0.46 8.66 -39.57 -0.34 0.11 16 24 C -0.08 0.19 6.70 -39.46 -0.26 -0.08 16 25 C -0.09 0.13 6.99 -25.94 -0.18 -0.05 16 26 H 0.10 -0.48 8.14 -51.93 -0.42 -0.90 16 27 H 0.06 -0.10 8.13 -51.93 -0.42 -0.53 16 28 H 0.07 -0.12 8.13 -51.93 -0.42 -0.54 16 29 H 0.11 -0.26 7.48 -51.93 -0.39 -0.65 16 30 H 0.11 -0.72 5.95 -51.93 -0.31 -1.03 16 31 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 32 H 0.07 -0.10 7.66 -51.93 -0.40 -0.50 16 33 H 0.11 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.15 -0.20 6.30 -52.49 -0.33 -0.53 16 35 H 0.12 -0.27 7.96 -51.93 -0.41 -0.68 16 36 H 0.38 -2.14 8.70 45.56 0.40 -1.74 16 37 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 38 H -0.25 0.35 7.11 56.52 0.40 0.75 16 39 H 0.15 -0.84 4.87 -52.48 -0.26 -1.09 16 40 H 0.15 -0.89 6.56 -52.49 -0.34 -1.24 16 41 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 42 H 0.11 0.01 7.40 -51.93 -0.38 -0.37 16 LS Contribution 359.12 15.07 5.41 5.41 Total: 0.00 -13.60 359.12 -9.82 -23.42 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: -4.98 Total: -13.09 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.29 Total: 3.41 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -4.34 Total: -18.11 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: -5.06 Total: -7.41 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -0.55 Total: 6.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -13.60 -9.82 -23.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79479_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.607 kcal (2) G-P(sol) polarization free energy of solvation -13.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds