Wall clock time and date at job start Mon Mar 8 2021 14:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99882 * 2 1 4 4 O 1.20823 * 120.00224 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.85558 * 311.19714 * 5 3 2 7 7 C 1.53778 * 113.61189 * 82.50551 * 5 3 2 8 8 C 1.53780 * 87.08364 * 139.98150 * 7 5 3 9 9 H 1.08994 * 113.69329 * 89.12879 * 8 7 5 10 10 S 1.81404 * 113.61471 * 220.01873 * 8 7 5 11 11 O 1.42098 * 110.54139 * 170.86724 * 10 8 7 12 12 O 1.42104 * 110.54050 * 34.12316 * 10 8 7 13 13 O 1.52201 * 104.45087 * 282.49708 * 10 8 7 14 14 C 1.35991 * 113.99917 * 74.99902 * 13 10 8 15 15 C 1.39151 * 120.07378 * 90.00307 * 14 13 10 16 16 O 1.35987 * 120.07278 * 0.04177 * 15 14 13 17 17 C 1.42904 * 117.00113 * 179.97438 * 16 15 14 18 18 C 1.38566 * 119.85393 * 180.02562 * 15 14 13 19 19 C 1.38241 * 120.00158 * 359.97438 * 18 15 14 20 20 C 1.50699 * 119.92870 * 179.97438 * 19 18 15 21 21 O 1.42901 * 109.46830 * 300.00129 * 20 19 18 22 22 Si 1.86298 * 109.46950 * 180.02562 * 20 19 18 23 23 C 1.38255 * 120.14388 * 0.27945 * 19 18 15 24 24 C 1.38245 * 120.14566 * 359.44082 * 23 19 18 25 25 C 1.53780 * 113.61371 * 179.97438 * 5 3 2 26 26 H 1.09005 * 109.46633 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46771 * 299.99715 * 1 2 3 28 28 H 1.08994 * 109.47024 * 60.00020 * 1 2 3 29 29 H 1.09004 * 113.61903 * 25.42778 * 7 5 3 30 30 H 1.09001 * 113.61706 * 254.52916 * 7 5 3 31 31 H 1.08997 * 109.46753 * 299.99593 * 17 16 15 32 32 H 1.08999 * 109.47187 * 59.99607 * 17 16 15 33 33 H 1.09004 * 109.46971 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.99892 * 179.97438 * 18 15 14 35 35 H 1.08991 * 109.47351 * 60.00277 * 20 19 18 36 36 H 0.96708 * 114.00246 * 299.99864 * 21 20 19 37 37 H 1.48506 * 109.99834 * 180.02562 * 22 20 19 38 38 H 1.48502 * 110.00011 * 301.31529 * 22 20 19 39 39 H 1.08004 * 119.92680 * 179.70612 * 23 19 18 40 40 H 1.07998 * 119.99964 * 180.25397 * 24 23 19 41 41 H 1.08999 * 113.61244 * 105.47512 * 25 5 3 42 42 H 1.08998 * 113.69353 * 334.58182 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0234 0.6366 0.7566 7 6 4.1916 1.1233 -1.3961 8 6 5.1814 2.2266 -0.9866 9 1 6.0816 1.8495 -0.5015 10 16 5.5398 3.4105 -2.3136 11 8 6.2867 4.5104 -1.8122 12 8 4.3904 3.6140 -3.1241 13 8 6.5155 2.6775 -3.2232 14 6 5.9378 1.7197 -3.9966 15 6 5.4479 2.0439 -5.2581 16 8 5.5465 3.3189 -5.7204 17 6 5.0226 3.5786 -7.0244 18 6 4.8596 1.0645 -6.0422 19 6 4.7609 -0.2314 -5.5710 20 6 4.1202 -1.2951 -6.4249 21 8 2.7694 -0.9268 -6.7108 22 14 4.1407 -2.9194 -5.5127 23 6 5.2429 -0.5523 -4.3156 24 6 5.8362 0.4188 -3.5306 25 6 4.1077 2.7142 -0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.5242 1.4144 -2.2073 30 1 4.6620 0.1540 -1.5611 31 1 5.5444 2.9609 -7.7552 32 1 3.9587 3.3420 -7.0422 33 1 5.1646 4.6310 -7.2700 34 1 4.4782 1.3136 -7.0214 35 1 4.6748 -1.3950 -7.3578 36 1 2.2160 -0.8201 -5.9249 37 1 3.5122 -3.9770 -6.3445 38 1 5.5378 -3.2981 -5.1811 39 1 5.1597 -1.5648 -3.9491 40 1 6.2156 0.1646 -2.5519 41 1 4.5105 3.0297 0.9624 42 1 3.4184 3.4413 -0.4293 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79479_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:38:19 Heat of formation + Delta-G solvation = -185.516260 kcal Electronic energy + Delta-G solvation = -32172.735565 eV Core-core repulsion = 27600.977221 eV Total energy + Delta-G solvation = -4571.758344 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.51187 -41.84240 -40.30644 -39.57315 -39.13694 -38.38231 -37.38701 -37.32475 -37.12817 -32.28411 -31.57738 -29.81008 -28.67261 -27.64288 -27.10430 -26.83478 -23.87460 -23.49578 -23.20229 -21.72283 -20.71366 -19.95821 -19.22838 -19.05657 -18.57996 -18.42850 -18.08760 -17.50820 -17.44656 -16.92618 -16.80684 -16.72461 -16.25168 -16.13248 -15.78068 -15.50863 -15.25497 -14.73817 -14.56098 -14.40759 -14.23589 -14.13463 -13.90155 -13.72605 -13.55945 -13.53430 -13.38506 -13.24881 -13.21411 -12.93521 -12.80289 -12.69094 -12.65826 -12.23661 -12.11982 -11.82948 -11.78079 -11.72719 -11.50402 -11.25444 -10.51225 -10.07782 -9.46111 -4.93199 -1.12342 -0.15005 0.12501 0.97663 1.11886 1.32530 1.71450 1.75912 2.04820 2.08093 2.26497 2.41642 2.69360 2.97599 3.18262 3.25989 3.35679 3.49837 3.59981 3.71107 3.74922 3.94042 3.99019 4.05332 4.20320 4.24120 4.29320 4.36313 4.37447 4.40151 4.42522 4.45242 4.49558 4.58571 4.67918 4.72629 4.77781 4.80096 4.85255 4.96911 5.04894 5.17915 5.39694 5.46376 6.10030 6.70159 6.76090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.463 3.537 4 O -0.544 6.544 5 C -0.084 4.084 6 H 0.180 0.820 7 C -0.103 4.103 8 C -0.619 4.619 9 H 0.212 0.788 10 S 2.581 3.419 11 O -0.979 6.979 12 O -0.972 6.972 13 O -0.657 6.657 14 C 0.003 3.997 15 C 0.134 3.866 16 O -0.333 6.333 17 C 0.015 3.985 18 C -0.181 4.181 19 C -0.056 4.056 20 C -0.086 4.086 21 O -0.555 6.555 22 Si 0.791 3.209 23 C -0.134 4.134 24 C -0.073 4.073 25 C -0.108 4.108 26 H 0.134 0.866 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.397 0.603 37 H -0.306 1.306 38 H -0.268 1.268 39 H 0.181 0.819 40 H 0.199 0.801 41 H 0.124 0.876 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -10.729 2.862 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.308 3.692 4 O -0.433 6.433 5 C -0.103 4.103 6 H 0.197 0.803 7 C -0.141 4.141 8 C -0.730 4.730 9 H 0.229 0.771 10 S 2.682 3.318 11 O -0.978 6.978 12 O -0.970 6.970 13 O -0.616 6.616 14 C -0.040 4.040 15 C 0.085 3.915 16 O -0.246 6.246 17 C -0.079 4.079 18 C -0.200 4.200 19 C -0.058 4.058 20 C -0.195 4.195 21 O -0.363 6.363 22 Si 0.695 3.305 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.146 4.146 26 H 0.152 0.848 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.247 0.753 37 H -0.234 1.234 38 H -0.194 1.194 39 H 0.198 0.802 40 H 0.216 0.784 41 H 0.142 0.858 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.527 -10.369 1.927 10.560 hybrid contribution -0.141 1.159 -0.593 1.310 sum -0.668 -9.210 1.334 9.330 Atomic orbital electron populations 1.23543 0.75208 1.05785 1.02207 1.86503 1.24463 1.32356 1.83330 1.24158 0.92774 0.81229 0.71079 1.90710 1.68061 1.37894 1.46679 1.22611 0.85691 0.99511 1.02484 0.80280 1.23207 0.95091 1.00098 0.95722 1.32114 1.09942 1.14589 1.16314 0.77051 1.05855 0.72944 0.76360 0.76638 1.93568 1.71093 1.51390 1.81702 1.93607 1.53568 1.85338 1.64483 1.85711 1.58018 1.57195 1.60709 1.17847 1.07494 0.88229 0.90411 1.19499 0.94297 0.84951 0.92709 1.86134 1.76846 1.25339 1.36296 1.23439 0.99630 1.04407 0.80391 1.21187 1.04155 0.92853 1.01791 1.20587 0.95792 0.94175 0.95221 1.25481 0.84754 1.05445 1.03808 1.86502 1.19466 1.92383 1.37915 0.93663 0.81063 0.71279 0.84495 1.21195 1.00170 1.00774 0.93014 1.21714 0.96534 0.87890 1.03085 1.22777 0.94179 0.96788 1.00875 0.84813 0.92537 0.92239 0.88562 0.82545 0.90684 0.91265 0.86784 0.83367 0.86986 0.75255 1.23408 1.19406 0.80180 0.78424 0.85796 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.12 10.56 113.37 1.20 1.07 16 2 O -0.35 0.99 10.57 -51.43 -0.54 0.45 16 3 C 0.46 0.00 7.48 71.24 0.53 0.54 16 4 O -0.54 -4.80 15.65 21.97 0.34 -4.46 16 5 C -0.08 0.67 4.26 -11.02 -0.05 0.63 16 6 H 0.18 -2.87 8.14 -2.39 -0.02 -2.89 16 7 C -0.10 1.01 4.86 31.12 0.15 1.16 16 8 C -0.62 4.02 3.97 31.11 0.12 4.15 16 9 H 0.21 -3.29 8.14 -2.39 -0.02 -3.31 16 10 S 2.58 18.16 5.15 -56.49 -0.29 17.87 16 11 O -0.98 -15.65 18.09 -118.57 -2.15 -17.79 16 12 O -0.97 -12.23 15.13 -117.15 -1.77 -14.00 16 13 O -0.66 -4.28 9.84 -60.46 -0.59 -4.87 16 14 C 0.00 0.01 4.64 22.57 0.10 0.11 16 15 C 0.13 0.80 5.93 22.57 0.13 0.93 16 16 O -0.33 -3.33 9.73 -72.60 -0.71 -4.04 16 17 C 0.02 0.02 9.81 113.37 1.11 1.14 16 18 C -0.18 -0.10 8.60 22.35 0.19 0.09 16 19 C -0.06 0.27 5.39 -19.86 -0.11 0.16 16 20 C -0.09 0.51 2.82 71.24 0.20 0.71 16 21 O -0.55 2.26 12.76 -148.98 -1.90 0.36 16 22 Si 0.79 -7.06 29.78 68.60 2.04 -5.02 16 23 C -0.13 1.26 8.66 22.28 0.19 1.46 16 24 C -0.07 0.54 6.70 22.35 0.15 0.69 16 25 C -0.11 0.41 6.99 31.11 0.22 0.62 16 26 H 0.13 -1.47 8.14 -2.38 -0.02 -1.49 16 27 H 0.06 -0.17 8.13 -2.39 -0.02 -0.19 16 28 H 0.06 -0.20 8.13 -2.39 -0.02 -0.22 16 29 H 0.10 -0.55 7.48 -2.38 -0.02 -0.57 16 30 H 0.16 -3.03 5.95 -2.39 -0.01 -3.04 16 31 H 0.07 -0.16 7.66 -2.39 -0.02 -0.18 16 32 H 0.07 0.00 7.66 -2.39 -0.02 -0.02 16 33 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.15 -0.12 6.30 -2.91 -0.02 -0.14 16 35 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 36 H 0.40 -4.77 8.70 -74.05 -0.64 -5.41 16 37 H -0.31 -0.08 7.11 99.48 0.71 0.63 16 38 H -0.27 1.65 7.11 99.48 0.71 2.35 16 39 H 0.18 -3.03 4.87 -2.91 -0.01 -3.04 16 40 H 0.20 -3.40 6.56 -2.91 -0.02 -3.42 16 41 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.08 0.18 7.40 -2.39 -0.02 0.17 16 Total: 0.00 -39.51 359.12 -0.94 -40.45 By element: Atomic # 1 Polarization: -22.88 SS G_CDS: 0.48 Total: -22.41 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 4.15 Total: 13.46 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -7.32 Total: -44.35 kcal Atomic # 14 Polarization: -7.06 SS G_CDS: 2.04 Total: -5.02 kcal Atomic # 16 Polarization: 18.16 SS G_CDS: -0.29 Total: 17.87 kcal Total: -39.51 -0.94 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79479_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.069 kcal (2) G-P(sol) polarization free energy of solvation -39.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds