Wall clock time and date at job start Mon Mar 8 2021 11:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46990 * 2 1 4 4 C 1.34225 * 116.99706 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00479 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00100 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.46805 * 300.00365 * 6 4 3 8 8 C 1.53002 * 109.46754 * 59.99822 * 6 4 3 9 9 C 1.53006 * 109.46842 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47007 * 299.99950 * 9 8 6 11 11 F 1.39904 * 109.46768 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47250 * 300.00165 * 10 9 8 13 13 S 1.81395 * 109.46986 * 304.99951 * 12 10 9 14 14 O 1.42105 * 110.54530 * 291.62628 * 13 12 10 15 15 O 1.42101 * 110.54333 * 68.37799 * 13 12 10 16 16 O 1.52198 * 104.44745 * 180.02562 * 13 12 10 17 17 C 1.35995 * 114.00087 * 75.00018 * 16 13 12 18 18 C 1.39159 * 120.07219 * 89.99715 * 17 16 13 19 19 O 1.35995 * 120.07409 * 359.97438 * 18 17 16 20 20 C 1.42898 * 117.00094 * 179.97438 * 19 18 17 21 21 C 1.38570 * 119.85455 * 180.02562 * 18 17 16 22 22 C 1.38236 * 119.99582 * 0.02562 * 21 18 17 23 23 C 1.50701 * 119.92286 * 179.97438 * 22 21 18 24 24 O 1.42896 * 109.47500 * 65.00304 * 23 22 21 25 25 Si 1.86311 * 109.46952 * 185.00090 * 23 22 21 26 26 C 1.38253 * 120.15070 * 359.97438 * 22 21 18 27 27 C 1.38237 * 120.14527 * 359.76307 * 26 22 21 28 28 C 1.52997 * 109.46990 * 60.00413 * 10 9 8 29 29 C 1.52994 * 109.47354 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47414 * 300.00106 * 1 2 3 32 32 H 1.09000 * 109.47066 * 59.99944 * 1 2 3 33 33 H 1.08996 * 109.47191 * 239.99690 * 2 1 3 34 34 H 1.08998 * 109.47333 * 119.99585 * 2 1 3 35 35 H 1.08996 * 109.47503 * 300.00078 * 8 6 4 36 36 H 1.09004 * 109.47021 * 60.00675 * 8 6 4 37 37 H 1.09003 * 109.47004 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46917 * 59.99935 * 9 8 6 39 39 H 1.09003 * 109.46593 * 185.00026 * 12 10 9 40 40 H 1.08994 * 109.46870 * 65.00395 * 12 10 9 41 41 H 1.08997 * 109.47001 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.46729 * 299.99777 * 20 19 18 43 43 H 1.09000 * 109.47424 * 59.99256 * 20 19 18 44 44 H 1.07999 * 119.99957 * 180.02562 * 21 18 17 45 45 H 1.09002 * 109.47487 * 304.99988 * 23 22 21 46 46 H 0.96702 * 114.00260 * 59.99261 * 24 23 22 47 47 H 1.48495 * 109.99732 * 180.02562 * 25 23 22 48 48 H 1.48501 * 109.99861 * 301.31565 * 25 23 22 49 49 H 1.07998 * 119.92697 * 180.02562 * 26 22 21 50 50 H 1.08006 * 120.00196 * 180.26278 * 27 26 22 51 51 H 1.09000 * 109.47640 * 59.99582 * 28 10 9 52 52 H 1.08996 * 109.47214 * 179.97438 * 28 10 9 53 53 H 1.09003 * 109.47287 * 60.00010 * 29 6 4 54 54 H 1.09004 * 109.47345 * 299.99891 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5851 3.4690 -0.8905 8 6 3.4485 3.6851 1.2486 9 6 4.0329 5.0992 1.2477 10 6 5.5608 5.0196 1.2482 11 9 6.0951 6.3126 1.2480 12 6 6.0323 4.2736 2.4981 13 16 5.3493 5.0760 3.9747 14 8 5.9308 6.3595 4.1588 15 8 3.9413 4.8942 4.0348 16 8 5.8847 4.2518 5.1367 17 6 7.1983 4.4715 5.4119 18 6 7.5647 5.4626 6.3174 19 8 6.6101 6.2139 6.9288 20 6 7.0596 7.2124 7.8469 21 6 8.9045 5.6831 6.5941 22 6 9.8737 4.9196 5.9705 23 6 11.3303 5.1611 6.2722 24 8 11.5931 4.8409 7.6398 25 14 12.3793 4.0859 5.1700 26 6 9.5096 3.9350 5.0709 27 6 8.1746 3.7063 4.7945 28 6 6.0330 4.2719 -0.0003 29 6 5.4486 2.8573 0.0001 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3600 3.7422 1.2480 36 1 3.7841 3.1535 2.1391 37 1 3.6968 5.6317 2.1375 38 1 3.6970 5.6305 0.3572 39 1 7.1211 4.2940 2.5443 40 1 5.6897 3.2398 2.4550 41 1 6.1996 7.7378 8.2620 42 1 7.6203 6.7389 8.6528 43 1 7.7019 7.9223 7.3258 44 1 9.1915 6.4513 7.2968 45 1 11.5698 6.2091 6.0919 46 1 11.4021 3.9219 7.8723 47 1 13.8180 4.3143 5.4581 48 1 12.0399 2.6561 5.3833 49 1 10.2698 3.3403 4.5861 50 1 7.8927 2.9336 4.0945 51 1 5.6971 4.8033 -0.8908 52 1 7.1215 4.2156 -0.0002 53 1 5.7846 2.3248 -0.8896 54 1 5.7845 2.3256 0.8904 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79479_16464696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:20:13 Heat of formation + Delta-G solvation = -270.611478 kcal Electronic energy + Delta-G solvation = -43629.680846 eV Core-core repulsion = 37962.628045 eV Total energy + Delta-G solvation = -5667.052801 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -48.99660 -42.56402 -41.84206 -40.39639 -39.61695 -39.25387 -38.43161 -37.66912 -37.41926 -37.25960 -33.55151 -32.52650 -32.29034 -32.06866 -31.59683 -29.25058 -28.64603 -26.92305 -25.38374 -24.19763 -23.92610 -23.57735 -23.50055 -21.98668 -21.78602 -20.55697 -19.65191 -19.25659 -18.88442 -18.76017 -18.64829 -18.14261 -18.00100 -17.66261 -17.34392 -17.24387 -16.93892 -16.68728 -16.38536 -16.20391 -16.10603 -15.91001 -15.57873 -15.38500 -15.35821 -15.05183 -14.95031 -14.63632 -14.44873 -14.33159 -14.19462 -14.07577 -13.74152 -13.68384 -13.59682 -13.53122 -13.41143 -13.34308 -13.18849 -13.09821 -12.89606 -12.86961 -12.76081 -12.70705 -12.66151 -12.49189 -12.28475 -12.24764 -12.20872 -11.90780 -11.69743 -11.59458 -11.49634 -11.37982 -11.11569 -10.71195 -10.22485 -9.54221 -4.88420 -1.24251 -0.23578 0.04968 0.89742 1.09010 1.27797 1.62980 1.63197 1.99287 2.02843 2.18796 2.37439 2.75039 2.87923 3.11509 3.15433 3.26611 3.38023 3.42443 3.46746 3.53744 3.67414 3.68117 3.83289 3.87194 3.95349 3.98368 4.00016 4.04397 4.06316 4.18152 4.21591 4.23100 4.24970 4.30423 4.32266 4.34078 4.47502 4.55669 4.59917 4.67883 4.69584 4.77462 4.78495 4.83868 4.89480 4.89895 4.92438 4.94336 5.04981 5.10495 5.13043 5.14783 5.26813 5.38450 5.45509 6.05208 6.45468 6.65437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.534 6.534 6 C -0.082 4.082 7 H 0.140 0.860 8 C -0.108 4.108 9 C -0.177 4.177 10 C 0.134 3.866 11 F -0.205 7.205 12 C -0.679 4.679 13 S 2.579 3.421 14 O -0.963 6.963 15 O -0.953 6.953 16 O -0.659 6.659 17 C -0.003 4.003 18 C 0.137 3.863 19 O -0.331 6.331 20 C 0.013 3.987 21 C -0.176 4.176 22 C -0.053 4.053 23 C -0.092 4.092 24 O -0.545 6.545 25 Si 0.777 3.223 26 C -0.134 4.134 27 C -0.081 4.081 28 C -0.119 4.119 29 C -0.107 4.107 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.156 0.844 45 H 0.132 0.868 46 H 0.389 0.611 47 H -0.305 1.305 48 H -0.267 1.267 49 H 0.177 0.823 50 H 0.189 0.811 51 H 0.103 0.897 52 H 0.109 0.891 53 H 0.093 0.907 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -2.290 -4.609 6.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.423 6.423 6 C -0.101 4.101 7 H 0.158 0.842 8 C -0.146 4.146 9 C -0.214 4.214 10 C 0.115 3.885 11 F -0.185 7.185 12 C -0.807 4.807 13 S 2.678 3.322 14 O -0.961 6.961 15 O -0.951 6.951 16 O -0.618 6.618 17 C -0.045 4.045 18 C 0.088 3.912 19 O -0.244 6.244 20 C -0.081 4.081 21 C -0.195 4.195 22 C -0.055 4.055 23 C -0.200 4.200 24 O -0.353 6.353 25 Si 0.681 3.319 26 C -0.152 4.152 27 C -0.101 4.101 28 C -0.158 4.158 29 C -0.144 4.144 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.201 0.799 40 H 0.200 0.800 41 H 0.135 0.865 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.174 0.826 45 H 0.150 0.850 46 H 0.239 0.761 47 H -0.233 1.233 48 H -0.193 1.193 49 H 0.194 0.806 50 H 0.206 0.794 51 H 0.121 0.879 52 H 0.128 0.872 53 H 0.112 0.888 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.805 -2.246 -4.080 6.014 hybrid contribution -0.417 -0.556 1.333 1.504 sum 3.387 -2.802 -2.746 5.183 Atomic orbital electron populations 1.21833 0.91000 1.04201 1.03679 1.23243 0.96758 0.79382 1.02569 1.86524 1.24463 1.33444 1.83408 1.24160 0.80581 0.93120 0.71212 1.90669 1.60929 1.44162 1.46543 1.21345 0.97269 0.88624 1.02867 0.84200 1.21500 1.03133 0.93650 0.96297 1.22679 0.92611 0.99524 1.06601 1.20653 0.93749 0.78465 0.95639 1.92973 1.87862 1.40136 1.97536 1.31603 1.17430 1.16122 1.15594 1.05910 0.75074 0.74756 0.76443 1.93628 1.78255 1.41164 1.83083 1.93603 1.29895 1.85965 1.85674 1.85724 1.32239 1.77773 1.66081 1.17899 0.78146 1.02446 1.06012 1.19459 0.89469 0.90221 0.92006 1.86135 1.33852 1.47757 1.56653 1.23499 1.03638 0.89569 0.91411 1.21271 0.89363 1.04221 1.04617 1.20534 0.96530 0.94026 0.94375 1.25470 0.94431 1.10566 0.89545 1.86607 1.88564 1.34800 1.25358 0.93942 0.74834 0.76503 0.86648 1.21216 0.95616 0.98986 0.99356 1.21603 0.91378 0.97750 0.99323 1.22072 1.03674 0.94775 0.95241 1.21568 0.90873 0.96682 1.05302 0.88613 0.91513 0.91167 0.91076 0.91450 0.88556 0.91383 0.90945 0.86046 0.79907 0.79990 0.86515 0.90598 0.90935 0.82630 0.84984 0.76142 1.23320 1.19275 0.80628 0.79391 0.87854 0.87242 0.88809 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.23 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -0.99 10.12 -51.37 -0.52 -1.51 16 4 C 0.47 1.09 7.26 71.24 0.52 1.60 16 5 O -0.53 -3.93 15.73 21.95 0.35 -3.59 16 6 C -0.08 0.33 2.63 -11.54 -0.03 0.30 16 7 H 0.14 -1.18 8.14 -2.39 -0.02 -1.20 16 8 C -0.11 0.16 4.56 30.60 0.14 0.30 16 9 C -0.18 0.12 4.62 30.60 0.14 0.26 16 10 C 0.13 -0.28 1.11 -10.79 -0.01 -0.29 16 11 F -0.20 -0.69 16.36 44.97 0.74 0.04 16 12 C -0.68 2.20 4.08 71.98 0.29 2.49 16 13 S 2.58 20.44 4.41 -56.49 -0.25 20.19 16 14 O -0.96 -13.15 15.51 -117.13 -1.82 -14.97 16 15 O -0.95 -12.52 14.90 -118.57 -1.77 -14.29 16 16 O -0.66 -5.37 9.84 -60.51 -0.60 -5.97 16 17 C 0.00 -0.01 4.80 22.57 0.11 0.09 16 18 C 0.14 0.97 5.93 22.57 0.13 1.11 16 19 O -0.33 -3.35 9.72 -72.62 -0.71 -4.05 16 20 C 0.01 0.01 9.81 113.37 1.11 1.13 16 21 C -0.18 -0.24 8.67 22.35 0.19 -0.04 16 22 C -0.05 0.17 5.35 -19.86 -0.11 0.06 16 23 C -0.09 0.45 2.80 71.24 0.20 0.65 16 24 O -0.54 0.84 12.83 -148.98 -1.91 -1.07 16 25 Si 0.78 -5.57 29.88 68.60 2.05 -3.52 16 26 C -0.13 0.84 8.66 22.27 0.19 1.03 16 27 C -0.08 0.31 8.46 22.35 0.19 0.50 16 28 C -0.12 0.95 5.19 30.61 0.16 1.11 16 29 C -0.11 0.70 4.22 30.61 0.13 0.83 16 30 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 34 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 35 H 0.10 -0.12 8.11 -2.39 -0.02 -0.14 16 36 H 0.07 -0.03 6.06 -2.39 -0.01 -0.05 16 37 H 0.07 0.31 5.40 -2.39 -0.01 0.30 16 38 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.18 -1.80 6.62 -2.39 -0.02 -1.81 16 40 H 0.18 -1.48 4.83 -2.39 -0.01 -1.49 16 41 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.08 -0.19 7.67 -2.39 -0.02 -0.21 16 43 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 44 H 0.16 -0.19 6.30 -2.91 -0.02 -0.21 16 45 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 46 H 0.39 -2.84 8.70 -74.06 -0.64 -3.49 16 47 H -0.30 -0.52 7.11 99.48 0.71 0.19 16 48 H -0.27 1.36 7.01 99.48 0.70 2.06 16 49 H 0.18 -2.23 4.83 -2.91 -0.01 -2.24 16 50 H 0.19 -2.32 7.52 -2.91 -0.02 -2.34 16 51 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 52 H 0.11 -1.21 8.14 -2.39 -0.02 -1.23 16 53 H 0.09 -0.63 8.10 -2.39 -0.02 -0.65 16 54 H 0.08 -0.56 6.28 -2.39 -0.01 -0.57 16 Total: 0.00 -33.26 435.49 0.46 -32.80 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: 0.35 Total: -16.91 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 4.55 Total: 12.85 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -6.97 Total: -45.45 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.74 Total: 0.04 kcal Atomic # 14 Polarization: -5.57 SS G_CDS: 2.05 Total: -3.52 kcal Atomic # 16 Polarization: 20.44 SS G_CDS: -0.25 Total: 20.19 kcal Total: -33.26 0.46 -32.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79479_16464696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.812 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds