Wall clock time and date at job start Mon Mar 8 2021 12:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45206 * 109.47196 * 2 1 4 4 C 1.34230 * 116.99938 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00296 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99550 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47102 * 299.99824 * 6 4 3 8 8 C 1.53002 * 109.47152 * 60.00538 * 6 4 3 9 9 C 1.53001 * 109.47043 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.46690 * 299.99508 * 9 8 6 11 11 F 1.39905 * 109.47065 * 300.00117 * 10 9 8 12 12 C 1.52997 * 109.47023 * 180.02562 * 10 9 8 13 13 S 1.81405 * 109.47026 * 59.99986 * 12 10 9 14 14 O 1.42099 * 110.54347 * 68.37346 * 13 12 10 15 15 O 1.42095 * 110.54087 * 291.62307 * 13 12 10 16 16 O 1.52196 * 104.44789 * 179.97438 * 13 12 10 17 17 C 1.35923 * 114.00358 * 75.00199 * 16 13 12 18 18 C 1.38698 * 120.04671 * 89.99271 * 17 16 13 19 19 C 1.50702 * 120.02443 * 359.96581 * 18 17 16 20 20 O 1.42899 * 109.47433 * 75.01696 * 19 18 17 21 21 Si 1.86296 * 109.47281 * 195.01921 * 19 18 17 22 22 C 1.38168 * 119.95546 * 179.97438 * 18 17 16 23 23 C 1.38322 * 120.03996 * 359.97438 * 22 18 17 24 24 Br 1.89106 * 119.95005 * 180.02562 * 23 22 18 25 25 C 1.38365 * 120.09601 * 359.97438 * 23 22 18 26 26 C 1.38115 * 120.04292 * 0.30176 * 25 23 22 27 27 C 1.52997 * 109.47196 * 59.99985 * 10 9 8 28 28 C 1.52995 * 109.47590 * 300.00068 * 27 10 9 29 29 H 1.09002 * 109.46662 * 299.99301 * 1 2 3 30 30 H 1.08996 * 109.47639 * 59.99726 * 1 2 3 31 31 H 1.09006 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47396 * 240.00578 * 2 1 3 33 33 H 1.08996 * 109.47639 * 120.00274 * 2 1 3 34 34 H 1.09002 * 109.46373 * 299.99420 * 8 6 4 35 35 H 1.08994 * 109.47700 * 59.99652 * 8 6 4 36 36 H 1.09001 * 109.47233 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47319 * 59.99220 * 9 8 6 38 38 H 1.09001 * 109.47149 * 300.00128 * 12 10 9 39 39 H 1.09006 * 109.47239 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.46964 * 315.01562 * 19 18 17 41 41 H 0.96700 * 113.99931 * 300.00762 * 20 19 18 42 42 H 1.48500 * 110.00136 * 59.99519 * 21 19 18 43 43 H 1.48494 * 110.00214 * 181.31903 * 21 19 18 44 44 H 1.07996 * 119.97448 * 180.02562 * 22 18 17 45 45 H 1.08002 * 119.97489 * 180.02562 * 25 23 22 46 46 H 1.08004 * 120.01935 * 179.72243 * 26 25 23 47 47 H 1.09008 * 109.47241 * 60.00088 * 27 10 9 48 48 H 1.09006 * 109.47020 * 179.97438 * 27 10 9 49 49 H 1.08992 * 109.47739 * 179.97438 * 28 27 10 50 50 H 1.09008 * 109.46845 * 300.00262 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4701 -0.8895 8 6 3.4498 3.6836 1.2500 9 6 4.0340 5.0977 1.2502 10 6 5.5620 5.0181 1.2491 11 9 5.9942 4.3347 2.3908 12 6 6.1463 6.4322 1.2499 13 16 5.5879 7.3162 2.7323 14 8 6.1728 6.7534 3.8986 15 8 4.1919 7.5727 2.6636 16 8 6.2289 8.6919 2.6180 17 6 5.6387 9.5024 1.7003 18 6 4.5938 10.3330 2.0773 19 6 4.1112 10.3371 3.5049 20 8 5.0489 11.0400 4.3227 21 14 2.4524 11.1801 3.5973 22 6 3.9956 11.1565 1.1430 23 6 4.4384 11.1533 -0.1674 24 35 3.6183 12.2820 -1.4439 25 6 5.4813 10.3263 -0.5453 26 6 6.0782 9.4974 0.3843 27 6 6.0329 4.2719 -0.0008 28 6 5.4487 2.8579 -0.0011 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3613 3.7406 1.2505 35 1 3.7861 3.1510 2.1395 36 1 3.6982 5.6295 2.1405 37 1 3.6973 5.6301 0.3607 38 1 5.8095 6.9650 0.3607 39 1 7.2349 6.3755 1.2496 40 1 4.0174 9.3108 3.8597 41 1 5.9363 10.6559 4.3226 42 1 1.4683 10.4587 2.7510 43 1 1.9801 11.2190 5.0046 44 1 3.1822 11.8037 1.4362 45 1 5.8258 10.3257 -1.5689 46 1 6.8893 8.8487 0.0879 47 1 5.6962 4.8044 -0.8904 48 1 7.1215 4.2157 -0.0018 49 1 5.7838 2.3265 -0.8917 50 1 5.7854 2.3255 0.8885 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:47:49 Heat of formation + Delta-G solvation = -236.207771 kcal Electronic energy + Delta-G solvation = -40867.360872 eV Core-core repulsion = 35336.201736 eV Total energy + Delta-G solvation = -5531.159136 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.15445 -42.69795 -41.81555 -39.67732 -39.15676 -38.61905 -37.92200 -37.71335 -37.49063 -34.31116 -33.34247 -33.02859 -32.63567 -32.11158 -30.19307 -29.14748 -27.27653 -25.25927 -24.59759 -24.16417 -23.53247 -23.39163 -22.04531 -21.65636 -20.90040 -19.83485 -19.28756 -18.97593 -18.81913 -18.44805 -17.86431 -17.74602 -17.33439 -17.16309 -17.15262 -16.83886 -16.56985 -16.24752 -15.79222 -15.54958 -15.34955 -15.34536 -15.03285 -14.93075 -14.68890 -14.58708 -14.55314 -14.26017 -14.09849 -13.98511 -13.78802 -13.75556 -13.55560 -13.50342 -13.30524 -13.23962 -13.22413 -13.18629 -12.95271 -12.93515 -12.65859 -12.52110 -12.23765 -12.22034 -12.06099 -11.89285 -11.77153 -11.60926 -11.59496 -11.48962 -11.39096 -11.29798 -11.13373 -10.36446 -9.93986 -5.05921 -1.44079 -0.42523 -0.18417 0.39906 0.71923 1.03640 1.16914 1.52149 1.57200 1.86464 2.00387 2.20173 2.55759 2.74222 3.05759 3.13061 3.22723 3.33314 3.34559 3.49586 3.54530 3.60172 3.66232 3.75483 3.82073 3.87574 3.92630 3.98024 4.00137 4.01077 4.09647 4.11931 4.21951 4.26015 4.27526 4.30765 4.47941 4.51522 4.59903 4.73683 4.75343 4.76794 4.78813 4.85067 4.85368 4.88237 4.90902 4.98013 5.05747 5.09932 5.22006 5.31319 5.39794 6.32585 6.60139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.076 4.076 7 H 0.150 0.850 8 C -0.111 4.111 9 C -0.174 4.174 10 C 0.121 3.879 11 F -0.216 7.216 12 C -0.662 4.662 13 S 2.575 3.425 14 O -0.961 6.961 15 O -0.959 6.959 16 O -0.664 6.664 17 C 0.065 3.935 18 C -0.092 4.092 19 C -0.118 4.118 20 O -0.539 6.539 21 Si 0.809 3.191 22 C -0.074 4.074 23 C -0.074 4.074 24 Br -0.020 7.020 25 C -0.059 4.059 26 C -0.110 4.110 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.202 0.798 39 H 0.185 0.815 40 H 0.072 0.928 41 H 0.374 0.626 42 H -0.247 1.247 43 H -0.291 1.291 44 H 0.164 0.836 45 H 0.187 0.813 46 H 0.195 0.805 47 H 0.132 0.868 48 H 0.101 0.899 49 H 0.089 0.911 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 4.031 -11.184 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.167 0.833 8 C -0.149 4.149 9 C -0.212 4.212 10 C 0.102 3.898 11 F -0.197 7.197 12 C -0.791 4.791 13 S 2.676 3.324 14 O -0.959 6.959 15 O -0.958 6.958 16 O -0.623 6.623 17 C 0.023 3.977 18 C -0.096 4.096 19 C -0.224 4.224 20 O -0.346 6.346 21 Si 0.708 3.292 22 C -0.093 4.093 23 C -0.155 4.155 24 Br 0.066 6.934 25 C -0.078 4.078 26 C -0.130 4.130 27 C -0.159 4.159 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.220 0.780 39 H 0.202 0.798 40 H 0.089 0.911 41 H 0.223 0.777 42 H -0.172 1.172 43 H -0.218 1.218 44 H 0.181 0.819 45 H 0.204 0.796 46 H 0.212 0.788 47 H 0.150 0.850 48 H 0.119 0.881 49 H 0.107 0.893 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.063 4.596 -10.511 11.656 hybrid contribution 1.698 -2.683 1.130 3.370 sum -0.366 1.913 -9.381 9.581 Atomic orbital electron populations 1.21823 0.90622 1.04254 1.03792 1.23245 0.96963 0.79421 1.02379 1.86512 1.24221 1.33380 1.83452 1.24297 0.80599 0.93323 0.71065 1.90675 1.61155 1.44490 1.46674 1.21293 0.96534 0.88500 1.03148 0.83252 1.21467 1.02807 0.94464 0.96163 1.22771 0.91864 0.98945 1.07583 1.20919 0.95236 0.88162 0.85525 1.92952 1.91378 1.81844 1.53508 1.31419 1.16432 1.07872 1.23395 1.05947 0.74358 0.74285 0.77853 1.93647 1.78681 1.76852 1.46762 1.93623 1.33129 1.81464 1.87536 1.85748 1.69889 1.43240 1.63388 1.18343 0.95775 0.96020 0.87580 1.20405 0.95591 0.96455 0.97141 1.26020 1.06330 1.02506 0.87572 1.86732 1.23784 1.55913 1.68131 0.92826 0.69169 0.87337 0.79880 1.21051 0.99722 0.97467 0.91058 1.22204 0.99724 0.99661 0.93901 1.96912 1.80059 1.63135 1.53311 1.21517 0.92350 0.91960 1.01983 1.21834 1.00994 1.01402 0.88810 1.22166 1.03233 0.94366 0.96136 1.21481 0.91747 0.97768 1.03914 0.91434 0.90922 0.88641 0.91168 0.91887 0.88287 0.92606 0.90154 0.84370 0.78044 0.79778 0.91094 0.77687 1.17203 1.21767 0.81927 0.79563 0.78787 0.84998 0.88093 0.89262 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.21 10.12 -51.41 -0.52 -1.73 16 4 C 0.46 2.03 7.26 71.24 0.52 2.55 16 5 O -0.54 -6.06 15.73 21.97 0.35 -5.72 16 6 C -0.08 0.23 2.63 -11.54 -0.03 0.20 16 7 H 0.15 -1.50 8.14 -2.39 -0.02 -1.52 16 8 C -0.11 0.19 5.01 30.60 0.15 0.34 16 9 C -0.17 0.71 4.52 30.60 0.14 0.85 16 10 C 0.12 -0.48 0.88 -10.79 -0.01 -0.49 16 11 F -0.22 -1.20 15.04 44.97 0.68 -0.52 16 12 C -0.66 5.88 4.74 71.98 0.34 6.22 16 13 S 2.58 6.64 4.27 -56.49 -0.24 6.40 16 14 O -0.96 -12.46 17.60 -118.57 -2.09 -14.54 16 15 O -0.96 -4.86 11.86 -118.57 -1.41 -6.27 16 16 O -0.66 -0.21 9.05 -61.78 -0.56 -0.77 16 17 C 0.06 -0.16 4.74 22.50 0.11 -0.05 16 18 C -0.09 -0.06 4.68 -19.77 -0.09 -0.15 16 19 C -0.12 -0.61 2.19 71.24 0.16 -0.46 16 20 O -0.54 -3.23 12.65 -148.98 -1.89 -5.11 16 21 Si 0.81 1.98 30.17 68.60 2.07 4.05 16 22 C -0.07 0.23 8.40 22.27 0.19 0.41 16 23 C -0.07 0.46 6.22 22.32 0.14 0.60 16 24 Br -0.02 0.12 33.70 -20.37 -0.69 -0.57 16 25 C -0.06 0.65 9.78 22.27 0.22 0.87 16 26 C -0.11 1.18 8.46 22.36 0.19 1.37 16 27 C -0.12 1.10 5.00 30.59 0.15 1.25 16 28 C -0.11 0.31 4.37 30.59 0.13 0.45 16 29 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 32 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 33 H 0.06 0.18 8.13 -2.39 -0.02 0.16 16 34 H 0.10 -0.31 8.11 -2.39 -0.02 -0.33 16 35 H 0.06 0.17 7.80 -2.39 -0.02 0.15 16 36 H 0.08 0.01 5.46 -2.39 -0.01 0.00 16 37 H 0.14 -1.61 8.14 -2.39 -0.02 -1.63 16 38 H 0.20 -3.76 6.59 -2.39 -0.02 -3.77 16 39 H 0.18 -2.57 8.14 -2.39 -0.02 -2.59 16 40 H 0.07 0.60 5.43 -2.39 -0.01 0.58 16 41 H 0.37 0.86 8.60 -74.06 -0.64 0.23 16 42 H -0.25 -0.86 7.11 99.48 0.71 -0.15 16 43 H -0.29 -2.69 7.11 99.48 0.71 -1.99 16 44 H 0.16 -0.97 5.13 -2.91 -0.01 -0.98 16 45 H 0.19 -3.21 8.06 -2.91 -0.02 -3.24 16 46 H 0.20 -3.79 7.47 -2.91 -0.02 -3.81 16 47 H 0.13 -2.22 8.14 -2.38 -0.02 -2.24 16 48 H 0.10 -1.07 8.14 -2.38 -0.02 -1.09 16 49 H 0.09 -0.30 8.10 -2.39 -0.02 -0.32 16 50 H 0.05 0.18 7.76 -2.38 -0.02 0.16 16 Total: 0.00 -32.07 429.69 -0.40 -32.47 By element: Atomic # 1 Polarization: -23.80 SS G_CDS: 0.40 Total: -23.40 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 3.49 Total: 15.71 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -6.11 Total: -34.14 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.68 Total: -0.52 kcal Atomic # 14 Polarization: 1.98 SS G_CDS: 2.07 Total: 4.05 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -0.24 Total: 6.40 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -32.07 -0.40 -32.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.733 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds