Wall clock time and date at job start Mon Mar 8 2021 10:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00038 * 2 1 4 4 C 1.53006 * 112.84514 * 294.09411 * 3 2 1 5 5 F 1.39907 * 109.46605 * 194.80038 * 4 3 2 6 6 F 1.39897 * 109.47483 * 314.79660 * 4 3 2 7 7 F 1.39895 * 109.47129 * 74.80207 * 4 3 2 8 8 C 1.53778 * 113.61463 * 162.78999 * 3 2 1 9 9 C 1.53778 * 87.08233 * 270.88425 * 8 3 2 10 10 H 1.09002 * 113.61158 * 220.02689 * 9 8 3 11 11 C 1.52996 * 113.61764 * 89.11525 * 9 8 3 12 12 S 1.81398 * 109.47096 * 88.34122 * 11 9 8 13 13 O 1.42106 * 110.54194 * 291.49519 * 12 11 9 14 14 O 1.42103 * 110.54097 * 68.24100 * 12 11 9 15 15 O 1.52191 * 104.45082 * 179.86807 * 12 11 9 16 16 C 1.35918 * 114.00328 * 75.09633 * 15 12 11 17 17 C 1.38702 * 120.04542 * 95.39526 * 16 15 12 18 18 C 1.50696 * 120.02563 * 359.97438 * 17 16 15 19 19 O 1.42909 * 109.46639 * 75.04579 * 18 17 16 20 20 Si 1.86298 * 109.47375 * 195.04405 * 18 17 16 21 21 C 1.38171 * 119.95419 * 179.70743 * 17 16 15 22 22 C 1.38326 * 120.04074 * 0.56905 * 21 17 16 23 23 Br 1.89101 * 119.95035 * 179.74632 * 22 21 17 24 24 C 1.38360 * 120.09467 * 359.73169 * 22 21 17 25 25 C 1.38117 * 120.04616 * 359.97115 * 24 22 21 26 26 C 1.53779 * 113.61609 * 65.29161 * 3 2 1 27 27 H 1.08996 * 109.46643 * 302.36121 * 1 2 3 28 28 H 1.08999 * 109.46933 * 62.36202 * 1 2 3 29 29 H 1.09003 * 109.46874 * 182.35925 * 1 2 3 30 30 H 1.09007 * 113.61578 * 25.43197 * 8 3 2 31 31 H 1.09007 * 113.61334 * 156.24906 * 8 3 2 32 32 H 1.09001 * 109.46993 * 208.34265 * 11 9 8 33 33 H 1.09003 * 109.46990 * 328.34525 * 11 9 8 34 34 H 1.09001 * 109.47570 * 315.04954 * 18 17 16 35 35 H 0.96697 * 113.99906 * 65.45142 * 19 18 17 36 36 H 1.48503 * 109.99941 * 58.68510 * 20 18 17 37 37 H 1.48508 * 109.99835 * 180.02562 * 20 18 17 38 38 H 1.07993 * 119.98051 * 180.29921 * 21 17 16 39 39 H 1.07998 * 119.97912 * 179.97438 * 24 22 21 40 40 H 1.08003 * 120.02958 * 180.02562 * 25 24 22 41 41 H 1.09003 * 113.61436 * 203.66499 * 26 3 2 42 42 H 1.08998 * 113.61162 * 334.56426 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7260 2.0823 -1.2872 5 9 2.5831 3.1853 -1.3650 6 9 1.9370 1.2491 -2.3910 7 9 0.3983 2.5228 -1.2824 8 6 3.4904 1.3208 0.4169 9 6 2.9994 1.4813 1.8653 10 1 3.5968 2.1773 2.4542 11 6 2.7567 0.1511 2.5812 12 16 4.2936 -0.3992 3.3721 13 8 5.2556 -0.7646 2.3921 14 8 4.6360 0.4619 4.4495 15 8 3.9251 -1.7137 4.0448 16 6 3.7923 -2.7571 3.1839 17 6 4.8593 -3.6156 2.9634 18 6 6.1672 -3.3919 3.6778 19 8 6.0404 -3.7985 5.0419 20 14 7.5044 -4.3930 2.8531 21 6 4.7204 -4.6792 2.0925 22 6 3.5220 -4.8813 1.4318 23 35 3.3371 -6.3337 0.2350 24 6 2.4585 -4.0225 1.6456 25 6 2.5912 -2.9616 2.5200 26 6 1.7228 2.1078 1.2800 27 1 -0.3632 0.5501 0.8681 28 1 -0.3633 0.4767 -0.9104 29 1 -0.3633 -1.0268 0.0423 30 1 4.0058 0.3781 0.2325 31 1 4.0405 2.1842 0.0426 32 1 1.9846 0.2821 3.3393 33 1 2.4324 -0.5970 1.8577 34 1 6.4274 -2.3342 3.6367 35 1 5.8918 -4.7470 5.1574 36 1 7.6245 -4.0019 1.4256 37 1 8.7993 -4.1816 3.5488 38 1 5.5493 -5.3507 1.9243 39 1 1.5239 -4.1818 1.1285 40 1 1.7607 -2.2917 2.6870 41 1 1.7893 3.1871 1.1430 42 1 0.8111 1.8006 1.7923 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79519_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:39 Heat of formation + Delta-G solvation = -251.377865 kcal Electronic energy + Delta-G solvation = -38654.859144 eV Core-core repulsion = 32942.117802 eV Total energy + Delta-G solvation = -5712.741341 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.993 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -51.27715 -48.81521 -48.74391 -42.58284 -41.50237 -39.65835 -38.56137 -37.89411 -37.47953 -37.31230 -33.34762 -33.12378 -31.80359 -30.18754 -28.40774 -27.89021 -27.26109 -26.82414 -24.75192 -23.60234 -23.26153 -21.83456 -20.77869 -20.05192 -19.72989 -19.55266 -19.33873 -18.96234 -18.73750 -18.10391 -17.32136 -17.21077 -16.93035 -16.76074 -16.47718 -16.03145 -15.88467 -15.73467 -15.67046 -15.61950 -15.40472 -15.27911 -15.14865 -14.93499 -14.89984 -14.77150 -14.71939 -14.49573 -14.40068 -14.22867 -13.86890 -13.58117 -13.49566 -13.44297 -13.30104 -13.19159 -12.97041 -12.71982 -12.39261 -12.35120 -12.23614 -12.20859 -12.09947 -11.88337 -11.47910 -11.38715 -10.83855 -10.69368 -10.38139 -9.91283 -5.18976 -1.32886 -0.37776 -0.18628 0.39390 0.83182 1.06967 1.50024 1.54486 1.87378 2.02134 2.05135 2.31534 2.51558 2.57494 2.68787 2.80576 3.07868 3.14206 3.15481 3.27898 3.33362 3.46961 3.48722 3.55252 3.82367 3.88096 3.93588 4.15219 4.18533 4.24770 4.30296 4.35916 4.37646 4.43868 4.49936 4.51450 4.64064 4.72265 4.75002 4.81095 4.82728 4.84206 4.85801 5.32472 5.69482 6.64593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.340 6.340 3 C 0.042 3.958 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.182 7.182 8 C -0.137 4.137 9 C -0.099 4.099 10 H 0.117 0.883 11 C -0.621 4.621 12 S 2.578 3.422 13 O -0.972 6.972 14 O -0.965 6.965 15 O -0.662 6.662 16 C 0.082 3.918 17 C -0.101 4.101 18 C -0.102 4.102 19 O -0.546 6.546 20 Si 0.785 3.215 21 C -0.073 4.073 22 C -0.079 4.079 23 Br -0.021 7.021 24 C -0.057 4.057 25 C -0.122 4.122 26 C -0.127 4.127 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.092 0.908 35 H 0.398 0.602 36 H -0.273 1.273 37 H -0.284 1.284 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -4.245 -0.875 8.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.258 6.258 3 C -0.001 4.001 4 C 0.378 3.622 5 F -0.160 7.160 6 F -0.168 7.168 7 F -0.164 7.164 8 C -0.174 4.174 9 C -0.119 4.119 10 H 0.135 0.865 11 C -0.751 4.751 12 S 2.679 3.321 13 O -0.970 6.970 14 O -0.963 6.963 15 O -0.621 6.621 16 C 0.040 3.960 17 C -0.104 4.104 18 C -0.210 4.210 19 O -0.354 6.354 20 Si 0.687 3.313 21 C -0.092 4.092 22 C -0.160 4.160 23 Br 0.065 6.935 24 C -0.076 4.076 25 C -0.142 4.142 26 C -0.165 4.165 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.186 0.814 34 H 0.109 0.891 35 H 0.249 0.751 36 H -0.199 1.199 37 H -0.211 1.211 38 H 0.186 0.814 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.142 0.858 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.491 -4.323 -1.199 7.091 hybrid contribution -0.739 1.776 -0.112 1.927 sum -6.230 -2.547 -1.311 6.857 Atomic orbital electron populations 1.23410 0.78387 1.05963 1.01985 1.88030 1.22298 1.21639 1.93813 1.23997 0.99606 0.86794 0.89691 1.21511 0.74197 0.78707 0.87829 1.93177 1.70496 1.55629 1.96686 1.93194 1.94540 1.71673 1.57422 1.93184 1.35967 1.90331 1.96877 1.23600 0.91933 1.06844 0.94993 1.21807 1.00295 0.94272 0.95504 0.86457 1.30743 1.21416 1.08190 1.14750 1.05854 0.78348 0.73790 0.74115 1.93612 1.59788 1.79872 1.63728 1.93617 1.83205 1.65437 1.54037 1.85730 1.90363 1.33570 1.52414 1.18288 0.96097 0.89215 0.92429 1.20494 0.96040 0.95775 0.98132 1.25457 1.01373 1.06048 0.88119 1.86557 1.95319 1.31687 1.21876 0.94417 0.74277 0.86248 0.76325 1.21070 0.97713 0.96211 0.94194 1.22146 0.96898 0.97351 0.99569 1.96893 1.98048 1.40036 1.58494 1.21431 0.99296 0.91247 0.95632 1.21817 0.95897 1.00574 0.95947 1.23660 0.99406 1.01459 0.92024 0.90745 0.93960 0.85870 0.88174 0.85155 0.79853 0.81372 0.89082 0.75113 1.19886 1.21085 0.81385 0.80099 0.79723 0.85834 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.34 113.37 1.17 1.19 16 2 O -0.34 1.64 8.39 -148.98 -1.25 0.39 16 3 C 0.04 -0.15 0.84 -10.27 -0.01 -0.16 16 4 C 0.43 0.24 2.53 71.98 0.18 0.42 16 5 F -0.18 -0.26 15.80 44.97 0.71 0.45 16 6 F -0.19 -0.87 17.12 44.97 0.77 -0.10 16 7 F -0.18 -0.10 15.27 44.97 0.69 0.59 16 8 C -0.14 0.43 6.89 31.12 0.21 0.65 16 9 C -0.10 0.57 3.85 -10.27 -0.04 0.53 16 10 H 0.12 -0.80 8.12 -2.39 -0.02 -0.82 16 11 C -0.62 3.99 4.86 71.98 0.35 4.34 16 12 S 2.58 11.68 4.98 -56.49 -0.28 11.40 16 13 O -0.97 -8.49 15.01 -118.57 -1.78 -10.27 16 14 O -0.96 -12.05 18.09 -118.57 -2.15 -14.20 16 15 O -0.66 -3.13 9.41 -61.72 -0.58 -3.71 16 16 C 0.08 0.13 4.70 22.50 0.11 0.23 16 17 C -0.10 -0.23 4.81 -19.77 -0.10 -0.32 16 18 C -0.10 -0.52 2.32 71.23 0.17 -0.36 16 19 O -0.55 -2.38 12.94 -148.98 -1.93 -4.31 16 20 Si 0.79 0.40 29.84 68.60 2.05 2.45 16 21 C -0.07 0.17 8.39 22.27 0.19 0.36 16 22 C -0.08 0.31 6.22 22.32 0.14 0.45 16 23 Br -0.02 0.08 33.70 -20.37 -0.69 -0.60 16 24 C -0.06 0.40 9.78 22.27 0.22 0.62 16 25 C -0.12 0.72 8.41 22.36 0.19 0.91 16 26 C -0.13 1.05 6.53 31.12 0.20 1.25 16 27 H 0.07 -0.93 6.62 -2.39 -0.02 -0.94 16 28 H 0.04 -0.24 6.47 -2.39 -0.02 -0.25 16 29 H 0.12 -1.62 8.14 -2.39 -0.02 -1.64 16 30 H 0.10 -0.14 8.10 -2.38 -0.02 -0.16 16 31 H 0.13 -0.62 7.05 -2.38 -0.02 -0.63 16 32 H 0.18 -2.46 8.14 -2.39 -0.02 -2.48 16 33 H 0.17 -1.53 4.14 -2.39 -0.01 -1.54 16 34 H 0.09 0.97 6.10 -2.39 -0.01 0.95 16 35 H 0.40 -2.51 8.60 -74.06 -0.64 -3.15 16 36 H -0.27 -1.39 7.11 99.48 0.71 -0.69 16 37 H -0.28 -1.95 7.11 99.48 0.71 -1.24 16 38 H 0.17 -1.15 5.14 -2.91 -0.01 -1.17 16 39 H 0.18 -2.33 8.06 -2.91 -0.02 -2.35 16 40 H 0.19 -2.51 6.87 -2.91 -0.02 -2.53 16 41 H 0.12 -1.20 8.01 -2.39 -0.02 -1.21 16 42 H 0.12 -1.49 6.65 -2.39 -0.02 -1.51 16 Total: 0.00 -28.24 381.42 -0.92 -29.17 By element: Atomic # 1 Polarization: -21.89 SS G_CDS: 0.53 Total: -21.36 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 2.98 Total: 10.10 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -7.68 Total: -32.09 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 2.17 Total: 0.94 kcal Atomic # 14 Polarization: 0.40 SS G_CDS: 2.05 Total: 2.45 kcal Atomic # 16 Polarization: 11.68 SS G_CDS: -0.28 Total: 11.40 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.60 kcal Total: -28.24 -0.92 -29.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79519_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.212 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds