Wall clock time and date at job start Mon Mar 8 2021 14:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46485 * 2 1 4 4 C 1.35901 * 116.99448 * 180.02562 * 3 2 1 5 5 C 1.38617 * 120.02619 * 180.27439 * 4 3 2 6 6 C 1.38654 * 119.88988 * 180.20380 * 5 4 3 7 7 O 1.35900 * 120.02376 * 179.79260 * 6 5 4 8 8 S 1.52196 * 113.99989 * 269.72274 * 7 6 5 9 9 O 1.42102 * 104.27781 * 318.92881 * 8 7 6 10 10 O 1.42100 * 104.27703 * 191.07412 * 8 7 6 11 11 C 1.81396 * 104.44991 * 75.00328 * 8 7 6 12 12 H 1.09003 * 112.84796 * 311.19570 * 11 8 7 13 13 C 1.53781 * 113.61611 * 82.50170 * 11 8 7 14 14 C 1.54049 * 87.08031 * 139.97710 * 13 11 8 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 C 1.50690 * 113.70074 * 220.05368 * 14 13 11 17 17 O 1.20821 * 120.00423 * 97.41863 * 16 14 13 18 18 O 1.34234 * 120.00013 * 277.42521 * 16 14 13 19 19 C 1.45203 * 116.99919 * 179.97438 * 18 16 14 20 20 C 1.53781 * 113.61536 * 179.97438 * 11 8 7 21 21 C 1.38753 * 119.94641 * 359.51632 * 6 5 4 22 22 C 1.50693 * 119.97182 * 180.27690 * 21 6 5 23 23 O 1.42899 * 109.47449 * 75.00135 * 22 21 6 24 24 Si 1.86307 * 109.46943 * 195.00107 * 22 21 6 25 25 C 1.38199 * 120.05071 * 0.25370 * 21 6 5 26 26 C 1.38153 * 120.11229 * 359.97423 * 25 21 6 27 27 H 1.08993 * 109.47245 * 299.99777 * 1 2 3 28 28 H 1.08994 * 109.47334 * 60.00559 * 1 2 3 29 29 H 1.09004 * 109.46879 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47245 * 240.00223 * 2 1 3 31 31 H 1.08994 * 109.47334 * 119.99441 * 2 1 3 32 32 H 1.08006 * 120.05280 * 359.97438 * 5 4 3 33 33 H 1.09005 * 113.61471 * 254.53293 * 13 11 8 34 34 H 1.08996 * 113.61178 * 25.34635 * 13 11 8 35 35 H 1.09005 * 109.46883 * 60.00147 * 19 18 16 36 36 H 1.09002 * 109.46788 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47143 * 299.99863 * 19 18 16 38 38 H 1.09002 * 113.61445 * 334.56785 * 20 11 8 39 39 H 1.09002 * 113.61408 * 105.38516 * 20 11 8 40 40 H 1.09006 * 109.47360 * 314.99980 * 22 21 6 41 41 H 0.96694 * 114.00242 * 59.99540 * 23 22 21 42 42 H 1.48494 * 109.99666 * 58.68017 * 24 22 21 43 43 H 1.48505 * 109.99818 * 179.97438 * 24 22 21 44 44 H 1.07999 * 119.94058 * 180.02562 * 25 21 6 45 45 H 1.07995 * 119.97161 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 3.8839 2.8061 0.0052 6 6 5.2589 2.9846 0.0003 7 8 5.7818 4.2389 0.0017 8 16 6.0209 4.8114 -1.3881 9 8 6.5463 3.7200 -2.1311 10 8 6.7948 5.9806 -1.1572 11 6 4.3662 5.2514 -1.9871 12 1 3.6413 4.4478 -1.8569 13 6 3.8715 6.6174 -1.4829 14 6 3.2921 6.8398 -2.8928 15 1 2.2732 6.4705 -3.0094 16 6 3.4688 8.2457 -3.4055 17 8 4.3891 8.5089 -4.1427 18 8 2.6036 9.2060 -3.0430 19 6 2.8356 10.5371 -3.5745 20 6 4.3640 5.8607 -3.3991 21 6 6.1005 1.8814 -0.0001 22 6 7.5950 2.0747 0.0010 23 8 8.0220 2.4805 1.3029 24 14 8.4288 0.4721 -0.4545 25 6 5.5693 0.6056 -0.0009 26 6 4.1996 0.4252 -0.0009 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.2272 3.6636 0.0096 33 1 3.1116 6.5465 -0.7046 34 1 4.6767 7.3059 -1.2267 35 1 2.7984 10.5052 -4.6635 36 1 2.0664 11.2151 -3.2048 37 1 3.8160 10.8903 -3.2547 38 1 5.3038 6.3430 -3.6680 39 1 4.0032 5.1782 -4.1686 40 1 7.8626 2.8426 -0.7249 41 1 7.8162 1.8436 2.0007 42 1 7.9689 0.0229 -1.7931 43 1 9.9032 0.6496 -0.4576 44 1 6.2260 -0.2517 -0.0008 45 1 3.7869 -0.5728 -0.0012 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79574_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:12 Heat of formation + Delta-G solvation = -191.524769 kcal Electronic energy + Delta-G solvation = -33494.406570 eV Core-core repulsion = 28766.850059 eV Total energy + Delta-G solvation = -4727.556511 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.58849 -42.00830 -40.75197 -39.67324 -38.82805 -38.55111 -37.60164 -37.52569 -37.23854 -33.21654 -31.70968 -31.35908 -29.96159 -27.82308 -27.23445 -26.72272 -25.32953 -23.96017 -23.28337 -23.14572 -21.58796 -20.90235 -20.06717 -19.55411 -19.08473 -18.59809 -18.34438 -17.98353 -17.80215 -17.58132 -17.08437 -16.97971 -16.89604 -16.50776 -16.23724 -15.87788 -15.51542 -15.15633 -14.85469 -14.62781 -14.54194 -14.49704 -14.15050 -14.06411 -13.96282 -13.90086 -13.80101 -13.67072 -13.52042 -13.44545 -13.32333 -13.11344 -12.92179 -12.85506 -12.79509 -12.27379 -12.12764 -11.98121 -11.94293 -11.92095 -11.73564 -11.61856 -11.41231 -10.54851 -10.24422 -9.42803 -5.13304 -1.33499 -0.15327 0.01669 0.73490 0.94600 1.18165 1.60083 1.61136 1.95466 2.02402 2.27093 2.32402 2.43787 2.73773 2.91048 3.09550 3.38948 3.45776 3.50218 3.62026 3.71003 3.80142 3.83817 4.07624 4.09544 4.14418 4.15349 4.21676 4.22932 4.23799 4.24459 4.31769 4.33437 4.45983 4.52596 4.61666 4.65330 4.74580 4.80795 4.84966 4.87726 5.00219 5.01355 5.05593 5.23497 5.31969 5.42710 6.25287 6.53046 6.72785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.041 3.959 3 O -0.319 6.319 4 C 0.154 3.846 5 C -0.172 4.172 6 C 0.099 3.901 7 O -0.658 6.658 8 S 2.582 3.418 9 O -0.972 6.972 10 O -0.965 6.965 11 C -0.622 4.622 12 H 0.201 0.799 13 C -0.097 4.097 14 C -0.086 4.086 15 H 0.179 0.821 16 C 0.463 3.537 17 O -0.539 6.539 18 O -0.356 6.356 19 C 0.025 3.975 20 C -0.100 4.100 21 C -0.148 4.148 22 C -0.112 4.112 23 O -0.554 6.554 24 Si 0.808 3.192 25 C -0.052 4.052 26 C -0.174 4.174 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.397 0.603 42 H -0.272 1.272 43 H -0.298 1.298 44 H 0.178 0.822 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 -8.854 2.914 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 O -0.233 6.233 4 C 0.108 3.892 5 C -0.192 4.192 6 C 0.058 3.942 7 O -0.617 6.617 8 S 2.683 3.317 9 O -0.970 6.970 10 O -0.963 6.963 11 C -0.733 4.733 12 H 0.218 0.782 13 C -0.135 4.135 14 C -0.106 4.106 15 H 0.197 0.803 16 C 0.308 3.692 17 O -0.429 6.429 18 O -0.272 6.272 19 C -0.068 4.068 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.219 4.219 23 O -0.363 6.363 24 Si 0.710 3.290 25 C -0.070 4.070 26 C -0.193 4.193 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.188 0.812 33 H 0.161 0.839 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.248 0.752 42 H -0.198 1.198 43 H -0.226 1.226 44 H 0.195 0.805 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.638 -8.414 2.023 12.953 hybrid contribution 0.048 1.647 -0.607 1.756 sum -9.590 -6.767 1.416 11.822 Atomic orbital electron populations 1.21828 0.92106 1.04111 1.03163 1.23236 0.96530 0.80051 1.03492 1.86106 1.17331 1.32110 1.87717 1.18609 0.83706 0.92744 0.94169 1.20590 0.91983 0.98692 1.07974 1.17743 0.91627 0.78570 1.06282 1.85706 1.83022 1.36601 1.56342 1.05750 0.78702 0.73979 0.73266 1.93580 1.78331 1.52357 1.72768 1.93606 1.68188 1.51412 1.83130 1.32095 1.22731 1.09507 1.08921 0.78232 1.22858 1.02747 0.90586 0.97342 1.22645 1.04565 0.86398 0.96975 0.80348 1.24100 0.78864 0.88998 0.77284 1.90696 1.32934 1.83407 1.35853 1.86507 1.52120 1.20649 1.67909 1.23574 1.03997 0.79313 0.99925 1.22769 1.00382 0.97451 0.93303 1.20541 0.96304 0.93659 1.04587 1.25709 0.93941 1.13321 0.88926 1.86534 1.82179 1.51001 1.16585 0.94456 0.75947 0.76242 0.82310 1.21040 0.95807 0.94846 0.95279 1.21862 0.93114 1.00326 1.03981 0.91999 0.91923 0.88515 0.89881 0.89771 0.81171 0.83881 0.89131 0.91824 0.84938 0.92345 0.89726 0.85023 0.89717 0.75216 1.19831 1.22636 0.80538 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.56 10.28 71.98 0.74 2.30 16 2 C 0.04 -0.42 5.46 71.98 0.39 -0.02 16 3 O -0.32 1.53 10.14 -92.43 -0.94 0.60 16 4 C 0.15 -0.60 6.68 22.49 0.15 -0.45 16 5 C -0.17 0.27 8.44 22.46 0.19 0.45 16 6 C 0.10 0.45 4.78 22.49 0.11 0.56 16 7 O -0.66 -5.76 9.47 -61.52 -0.58 -6.35 16 8 S 2.58 24.75 4.90 -56.49 -0.28 24.47 16 9 O -0.97 -12.78 14.24 -118.57 -1.69 -14.47 16 10 O -0.97 -17.38 17.27 -118.57 -2.05 -19.42 16 11 C -0.62 1.04 4.03 31.12 0.13 1.16 16 12 H 0.20 -1.83 6.12 -2.39 -0.01 -1.85 16 13 C -0.10 0.26 7.20 31.21 0.22 0.48 16 14 C -0.09 0.24 4.27 -10.94 -0.05 0.20 16 15 H 0.18 -1.93 8.14 -2.39 -0.02 -1.95 16 16 C 0.46 2.27 7.49 71.23 0.53 2.80 16 17 O -0.54 -6.74 15.65 21.98 0.34 -6.40 16 18 O -0.36 -0.99 10.57 -51.45 -0.54 -1.54 16 19 C 0.02 -0.01 10.56 113.37 1.20 1.19 16 20 C -0.10 0.04 6.98 31.11 0.22 0.26 16 21 C -0.15 -0.51 4.68 -19.75 -0.09 -0.60 16 22 C -0.11 -0.81 2.23 71.23 0.16 -0.65 16 23 O -0.55 -3.81 12.88 -148.98 -1.92 -5.73 16 24 Si 0.81 0.69 29.91 68.60 2.05 2.74 16 25 C -0.05 0.24 8.65 22.24 0.19 0.43 16 26 C -0.17 1.25 9.04 22.38 0.20 1.45 16 27 H 0.06 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.06 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 30 H 0.08 -1.08 7.66 -2.39 -0.02 -1.10 16 31 H 0.08 -1.10 7.66 -2.39 -0.02 -1.12 16 32 H 0.17 -1.16 7.28 -2.91 -0.02 -1.18 16 33 H 0.14 -1.41 8.14 -2.38 -0.02 -1.42 16 34 H 0.09 0.20 7.38 -2.39 -0.02 0.18 16 35 H 0.06 0.00 8.13 -2.38 -0.02 -0.01 16 36 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.06 0.07 8.13 -2.39 -0.02 0.06 16 38 H 0.08 0.42 7.39 -2.39 -0.02 0.40 16 39 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.09 1.21 5.42 -2.38 -0.01 1.20 16 41 H 0.40 -1.72 8.70 -74.06 -0.64 -2.36 16 42 H -0.27 -1.23 7.11 99.48 0.71 -0.52 16 43 H -0.30 -2.56 7.11 99.48 0.71 -1.86 16 44 H 0.18 -2.03 5.12 -2.91 -0.01 -2.05 16 45 H 0.18 -2.57 6.29 -2.91 -0.02 -2.59 16 Total: 0.00 -35.84 382.29 -0.86 -36.71 By element: Atomic # 1 Polarization: -20.61 SS G_CDS: 0.44 Total: -20.17 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.29 Total: 9.55 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -7.37 Total: -53.31 kcal Atomic # 14 Polarization: 0.69 SS G_CDS: 2.05 Total: 2.74 kcal Atomic # 16 Polarization: 24.75 SS G_CDS: -0.28 Total: 24.47 kcal Total: -35.84 -0.86 -36.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.816 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds