Wall clock time and date at job start Mon Mar 8 2021 13:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47294 * 2 1 4 4 C 1.34227 * 117.00016 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00311 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99669 * 179.97438 * 4 3 2 7 7 H 1.09003 * 112.84695 * 311.20095 * 6 4 3 8 8 C 1.53778 * 113.61115 * 82.50787 * 6 4 3 9 9 C 1.53781 * 87.07901 * 139.98039 * 8 6 4 10 10 F 1.39905 * 113.68855 * 220.00509 * 9 8 6 11 11 C 1.53002 * 113.61585 * 89.11705 * 9 8 6 12 12 S 1.81397 * 109.47268 * 82.50044 * 11 9 8 13 13 O 1.42101 * 110.54571 * 63.30387 * 12 11 9 14 14 O 1.42104 * 110.54371 * 286.55266 * 12 11 9 15 15 O 1.52203 * 104.44999 * 174.92969 * 12 11 9 16 16 C 1.35891 * 113.99856 * 77.10335 * 15 12 11 17 17 C 1.38757 * 120.03204 * 98.63825 * 16 15 12 18 18 C 1.50708 * 119.96666 * 0.02562 * 17 16 15 19 19 O 1.42903 * 109.46570 * 283.73610 * 18 17 16 20 20 Si 1.86300 * 109.46893 * 163.74074 * 18 17 16 21 21 C 1.38198 * 120.05797 * 180.26893 * 17 16 15 22 22 C 1.38149 * 120.10731 * 359.49093 * 21 17 16 23 23 C 1.38795 * 120.05820 * 0.25846 * 22 21 17 24 24 O 1.35893 * 120.02898 * 180.02562 * 23 22 21 25 25 C 1.42896 * 116.99923 * 0.02562 * 24 23 22 26 26 C 1.53002 * 109.46987 * 179.97438 * 25 24 23 27 27 C 1.38617 * 119.94193 * 359.97438 * 23 22 21 28 28 C 1.53776 * 113.61095 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.47372 * 59.99773 * 1 2 3 30 30 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47049 * 299.99485 * 1 2 3 32 32 H 1.09004 * 109.47049 * 240.00515 * 2 1 3 33 33 H 1.08998 * 109.47372 * 120.00226 * 2 1 3 34 34 H 1.08996 * 113.61489 * 25.42671 * 8 6 4 35 35 H 1.08999 * 113.61203 * 254.52740 * 8 6 4 36 36 H 1.09005 * 109.46776 * 322.49929 * 11 9 8 37 37 H 1.08999 * 109.47450 * 202.50474 * 11 9 8 38 38 H 1.08998 * 109.47528 * 43.73810 * 18 17 16 39 39 H 0.96696 * 114.00414 * 299.99826 * 19 18 17 40 40 H 1.48497 * 109.99899 * 179.97438 * 20 18 17 41 41 H 1.48498 * 110.00044 * 301.31620 * 20 18 17 42 42 H 1.07998 * 119.94183 * 179.76869 * 21 17 16 43 43 H 1.07999 * 119.97391 * 180.27175 * 22 21 17 44 44 H 1.09005 * 109.46784 * 299.99472 * 25 24 23 45 45 H 1.08997 * 109.47425 * 60.00163 * 25 24 23 46 46 H 1.08997 * 109.47207 * 299.99683 * 26 25 24 47 47 H 1.08999 * 109.47362 * 59.99911 * 26 25 24 48 48 H 1.09001 * 109.47275 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.04984 * 180.02562 * 27 23 22 50 50 H 1.09000 * 113.61415 * 105.47392 * 28 6 4 51 51 H 1.08996 * 113.61583 * 334.56867 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4714 3.5810 -0.7564 8 6 3.9857 3.5777 1.3967 9 6 5.3560 4.1430 0.9875 10 9 6.3097 4.1005 2.0102 11 6 5.2762 5.5107 0.3062 12 16 5.1596 6.8089 1.5677 13 8 6.3327 6.8321 2.3693 14 8 3.8677 6.8144 2.1596 15 8 5.2172 8.1100 0.7802 16 6 4.0535 8.4301 0.1558 17 6 3.1828 9.3423 0.7348 18 6 3.5286 9.9785 2.0565 19 8 3.3070 9.0387 3.1099 20 14 2.4539 11.4765 2.3245 21 6 1.9966 9.6641 0.1029 22 6 1.6795 9.0866 -1.1114 23 6 2.5494 8.1776 -1.6972 24 8 2.2371 7.6103 -2.8920 25 6 0.9974 7.9960 -3.4889 26 6 0.8208 7.2599 -4.8185 27 6 3.7376 7.8496 -1.0631 28 6 5.4582 2.9681 0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 4.0374 2.8515 2.2078 35 1 3.2285 4.3443 1.5611 36 1 4.3951 5.5464 -0.3346 37 1 6.1704 5.6691 -0.2967 38 1 4.5763 10.2791 2.0521 39 1 2.3938 8.7271 3.1734 40 1 2.7847 12.1127 3.6249 41 1 2.6514 12.4478 1.2187 42 1 1.3186 10.3715 0.5570 43 1 0.7539 9.3430 -1.6054 44 1 0.1764 7.7393 -2.8193 45 1 0.9987 9.0713 -3.6667 46 1 1.6417 7.5169 -5.4879 47 1 0.8196 6.1845 -4.6412 48 1 -0.1251 7.5537 -5.2737 49 1 4.4159 7.1427 -1.5176 50 1 5.8895 3.2428 -0.9625 51 1 5.9127 2.0753 0.4293 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79574_15494190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:00:18 Heat of formation + Delta-G solvation = -239.799232 kcal Electronic energy + Delta-G solvation = -41196.331519 eV Core-core repulsion = 35686.152456 eV Total energy + Delta-G solvation = -5510.179063 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.12799 -42.53902 -41.94311 -40.72679 -39.62539 -38.73800 -38.38474 -37.63251 -37.35844 -37.08359 -33.22460 -32.76264 -31.91700 -31.40443 -31.25631 -27.36639 -27.15467 -26.62188 -25.32734 -24.09238 -23.70843 -23.04456 -22.38672 -21.56632 -20.54615 -19.93951 -19.45622 -19.05366 -18.72544 -18.23922 -18.05054 -17.89056 -17.70408 -17.20561 -17.06767 -16.97084 -16.69121 -16.60569 -16.20435 -16.06770 -15.79949 -15.50468 -15.37618 -15.09374 -14.89535 -14.52070 -14.47349 -14.40961 -14.23676 -14.06023 -13.90737 -13.74571 -13.69422 -13.69089 -13.37252 -13.31356 -13.26108 -13.05688 -12.99455 -12.87391 -12.78825 -12.75965 -12.53244 -12.48638 -12.23769 -12.10352 -11.98563 -11.91461 -11.59813 -11.58352 -11.54880 -11.45860 -10.41006 -10.23090 -9.40170 -5.04129 -1.28431 -0.12618 0.04536 0.87055 0.96393 1.25192 1.52117 1.64953 1.98403 2.03637 2.31075 2.37250 2.58292 2.74001 2.82570 2.91166 3.11155 3.27263 3.42501 3.52864 3.59741 3.66344 3.76279 3.84810 3.89671 3.96943 4.02315 4.03575 4.08321 4.12638 4.15158 4.20318 4.24099 4.31861 4.38057 4.38670 4.42693 4.46905 4.55617 4.68610 4.76116 4.82693 4.84453 4.88287 4.90580 4.96876 5.01711 5.02412 5.09196 5.12870 5.32474 5.39276 5.45511 6.26513 6.57623 6.86118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.474 3.526 5 O -0.535 6.535 6 C -0.097 4.097 7 H 0.172 0.828 8 C -0.152 4.152 9 C 0.089 3.911 10 F -0.203 7.203 11 C -0.661 4.661 12 S 2.594 3.406 13 O -0.966 6.966 14 O -0.925 6.925 15 O -0.670 6.670 16 C 0.105 3.895 17 C -0.146 4.146 18 C -0.108 4.108 19 O -0.546 6.546 20 Si 0.806 3.194 21 C -0.049 4.049 22 C -0.177 4.177 23 C 0.158 3.842 24 O -0.320 6.320 25 C 0.041 3.959 26 C -0.156 4.156 27 C -0.190 4.190 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.090 0.910 39 H 0.397 0.603 40 H -0.302 1.302 41 H -0.271 1.271 42 H 0.179 0.821 43 H 0.178 0.822 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.168 0.832 50 H 0.125 0.875 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 1.679 -9.327 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.318 3.682 5 O -0.425 6.425 6 C -0.116 4.116 7 H 0.189 0.811 8 C -0.189 4.189 9 C 0.069 3.931 10 F -0.184 7.184 11 C -0.787 4.787 12 S 2.691 3.309 13 O -0.964 6.964 14 O -0.923 6.923 15 O -0.629 6.629 16 C 0.064 3.936 17 C -0.149 4.149 18 C -0.215 4.215 19 O -0.354 6.354 20 Si 0.709 3.291 21 C -0.066 4.066 22 C -0.196 4.196 23 C 0.111 3.889 24 O -0.233 6.233 25 C -0.033 4.033 26 C -0.213 4.213 27 C -0.210 4.210 28 C -0.159 4.159 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.211 0.789 37 H 0.200 0.800 38 H 0.108 0.892 39 H 0.248 0.752 40 H -0.230 1.230 41 H -0.197 1.197 42 H 0.196 0.804 43 H 0.196 0.804 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.185 0.815 50 H 0.143 0.857 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.671 2.580 -8.574 14.710 hybrid contribution 1.683 -1.010 -0.170 1.970 sum -9.989 1.570 -8.744 13.368 Atomic orbital electron populations 1.21828 0.90508 1.04271 1.03915 1.23296 0.97060 0.79182 1.02553 1.86516 1.23742 1.33593 1.83247 1.23662 0.80805 0.92417 0.71272 1.90693 1.61221 1.44048 1.46488 1.22428 0.96781 0.91058 1.01303 0.81080 1.23910 0.95730 1.02304 0.96971 1.21869 0.88939 0.94504 0.87761 1.92971 1.66777 1.97362 1.61257 1.31336 1.17244 1.10470 1.19680 1.05463 0.74437 0.75185 0.75862 1.93612 1.51830 1.85213 1.65723 1.93624 1.40331 1.83884 1.74475 1.85727 1.43950 1.60511 1.72738 1.17690 0.82105 1.00924 0.92901 1.20532 0.95909 0.99800 0.98698 1.25578 1.07389 1.03222 0.85352 1.86542 1.36293 1.62457 1.50147 0.93899 0.86100 0.72316 0.76826 1.21066 0.93656 0.97853 0.94063 1.21851 1.02157 0.98426 0.97160 1.18582 0.92549 0.91979 0.85778 1.86097 1.41640 1.64490 1.31117 1.23228 0.83492 1.00887 0.95644 1.21832 1.03477 1.01273 0.94684 1.20663 0.99100 1.06781 0.94474 1.23634 0.94174 0.96800 1.01307 0.90895 0.88671 0.91228 0.91147 0.91588 0.87449 0.85663 0.78885 0.79987 0.89243 0.75220 1.22998 1.19746 0.80447 0.80428 0.89449 0.90150 0.92248 0.91748 0.88538 0.81470 0.85670 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.77 10.29 71.98 0.74 1.51 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.42 16 3 O -0.35 -0.54 10.22 -51.39 -0.53 -1.07 16 4 C 0.47 1.32 7.48 71.24 0.53 1.85 16 5 O -0.53 -5.10 15.65 21.97 0.34 -4.76 16 6 C -0.10 0.35 3.91 -11.01 -0.04 0.31 16 7 H 0.17 -1.92 7.66 -2.39 -0.02 -1.94 16 8 C -0.15 0.19 7.09 31.12 0.22 0.41 16 9 C 0.09 0.09 1.79 -10.26 -0.02 0.07 16 10 F -0.20 -1.98 16.10 44.97 0.72 -1.26 16 11 C -0.66 2.09 4.72 71.98 0.34 2.43 16 12 S 2.59 19.24 4.98 -56.49 -0.28 18.95 16 13 O -0.97 -17.46 17.26 -118.57 -2.05 -19.51 16 14 O -0.92 -6.95 13.62 -115.31 -1.57 -8.52 16 15 O -0.67 -4.58 9.36 -61.42 -0.57 -5.16 16 16 C 0.11 0.25 4.60 22.49 0.10 0.35 16 17 C -0.15 -0.08 4.95 -19.75 -0.10 -0.18 16 18 C -0.11 -0.36 2.39 71.24 0.17 -0.19 16 19 O -0.55 -3.26 10.29 -127.77 -1.31 -4.57 16 20 Si 0.81 -2.15 29.94 68.60 2.05 -0.10 16 21 C -0.05 0.34 8.65 22.24 0.19 0.53 16 22 C -0.18 1.54 9.04 22.38 0.20 1.75 16 23 C 0.16 -0.83 6.68 22.49 0.15 -0.68 16 24 O -0.32 1.88 10.13 -92.35 -0.94 0.95 16 25 C 0.04 -0.46 5.46 71.98 0.39 -0.07 16 26 C -0.16 1.65 10.28 71.98 0.74 2.39 16 27 C -0.19 0.58 8.50 22.46 0.19 0.77 16 28 C -0.12 0.23 6.89 31.13 0.21 0.44 16 29 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.07 -0.35 8.14 -2.39 -0.02 -0.36 16 32 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 33 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 34 H 0.11 0.03 8.09 -2.39 -0.02 0.01 16 35 H 0.13 -0.53 7.68 -2.39 -0.02 -0.55 16 36 H 0.19 -2.15 5.52 -2.39 -0.01 -2.17 16 37 H 0.18 -1.50 8.14 -2.39 -0.02 -1.52 16 38 H 0.09 0.68 7.79 -2.39 -0.02 0.67 16 39 H 0.40 -0.97 8.70 -74.06 -0.64 -1.61 16 40 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 41 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 42 H 0.18 -2.47 5.17 -2.91 -0.02 -2.48 16 43 H 0.18 -2.75 6.29 -2.91 -0.02 -2.77 16 44 H 0.09 -1.26 7.66 -2.38 -0.02 -1.28 16 45 H 0.08 -1.08 7.66 -2.39 -0.02 -1.09 16 46 H 0.06 -0.51 8.14 -2.39 -0.02 -0.52 16 47 H 0.06 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.10 -1.28 8.14 -2.39 -0.02 -1.30 16 49 H 0.17 -1.38 6.65 -2.91 -0.02 -1.40 16 50 H 0.12 -0.91 8.10 -2.39 -0.02 -0.93 16 51 H 0.10 0.23 7.43 -2.39 -0.02 0.22 16 Total: 0.00 -34.89 428.34 0.73 -34.16 By element: Atomic # 1 Polarization: -21.64 SS G_CDS: 0.38 Total: -21.25 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.48 Total: 12.14 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -6.62 Total: -42.63 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.72 Total: -1.26 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.05 Total: -0.10 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.28 Total: 18.95 kcal Total: -34.89 0.73 -34.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_15494190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.643 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds